Wall clock time and date at job start Tue Mar 31 2020 13:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48500 * 109.47007 * 270.00157 * 3 2 1 5 5 H 1.48497 * 109.47041 * 30.00310 * 3 2 1 6 6 H 1.48497 * 109.46957 * 150.00338 * 3 2 1 7 7 C 1.39891 * 119.99610 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99919 * 166.35699 * 7 2 1 9 9 C 1.41441 * 119.99894 * 346.36007 * 7 2 1 10 10 C 1.40891 * 120.15852 * 151.78780 * 9 7 2 11 11 C 1.37762 * 120.09525 * 179.97438 * 10 9 7 12 12 C 1.38294 * 120.42662 * 0.27700 * 11 10 9 13 13 C 1.40239 * 120.32073 * 359.49124 * 12 11 10 14 14 N 1.36398 * 120.05441 * 180.23104 * 13 12 11 15 15 C 1.32977 * 120.00133 * 94.13157 * 14 13 12 16 16 C 1.46639 * 120.51146 * 185.17749 * 15 14 13 17 17 C 1.35008 * 118.41321 * 180.02562 * 16 15 14 18 18 N 1.36725 * 119.28290 * 359.97438 * 17 16 15 19 19 H 0.97008 * 119.50349 * 179.97438 * 18 17 16 20 20 C 1.36465 * 121.00723 * 359.97438 * 18 17 16 21 21 C 1.47211 * 119.13540 * 180.02562 * 20 18 17 22 22 N 1.30578 * 125.54244 * 179.97438 * 21 20 18 23 23 C 1.30877 * 115.85042 * 179.97438 * 22 21 20 24 24 C 1.34062 * 115.79941 * 359.97438 * 23 22 21 25 25 S 1.71063 * 109.12374 * 359.76782 * 24 23 22 26 26 N 1.31543 * 121.72922 * 359.74988 * 20 18 17 27 27 C 1.39289 * 119.89442 * 0.48369 * 13 12 11 28 28 H 0.97007 * 119.99499 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.95274 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.78848 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.84276 * 179.72420 * 12 11 10 32 32 H 1.08000 * 120.79023 * 359.97438 * 16 15 14 33 33 H 1.07995 * 120.35788 * 179.97438 * 17 16 15 34 34 H 1.08003 * 122.10394 * 180.02562 * 23 22 21 35 35 H 1.07996 * 125.43306 * 179.97438 * 24 23 22 36 36 H 1.08003 * 120.20925 * 179.74849 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4402 2.6526 0.7001 6 1 3.5402 1.4400 0.7000 7 6 2.0079 -1.2115 -0.0005 8 1 3.0651 -1.2247 -0.2212 9 6 1.3306 -2.4193 0.2878 10 6 1.7904 -3.6356 -0.2544 11 6 1.1300 -4.8112 0.0277 12 6 0.0096 -4.8080 0.8384 13 6 -0.4606 -3.6081 1.3914 14 7 -1.5634 -3.6118 2.1941 15 6 -1.4247 -3.6927 3.5142 16 6 -2.6017 -3.8115 4.3806 17 6 -2.4119 -3.8901 5.7149 18 7 -1.1388 -3.8574 6.2124 19 1 -0.9987 -3.9133 7.1707 20 6 -0.0620 -3.7472 5.3814 21 6 1.2907 -3.7163 5.9614 22 7 2.4039 -3.6150 5.2863 23 6 3.5031 -3.6052 5.9966 24 6 3.3409 -3.6998 7.3240 25 16 1.6706 -3.8015 7.6787 26 7 -0.2007 -3.6732 4.0754 27 6 0.1971 -2.4117 1.1154 28 1 -0.4850 0.8401 0.0004 29 1 2.6620 -3.6464 -0.8921 30 1 1.4866 -5.7407 -0.3909 31 1 -0.5035 -5.7345 1.0498 32 1 -3.5968 -3.8347 3.9613 33 1 -3.2566 -3.9780 6.3822 34 1 4.4795 -3.5249 5.5421 35 1 4.1375 -3.7069 8.0532 36 1 -0.1630 -1.4841 1.5353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307121258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:08 Heat of formation + Delta-G solvation = 148.462120 kcal Electronic energy + Delta-G solvation = -23520.772143 eV Core-core repulsion = 20097.785135 eV Total energy + Delta-G solvation = -3422.987008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.68440 -39.57880 -37.53575 -35.29666 -33.44162 -33.14374 -31.58154 -30.09808 -29.28811 -27.54412 -26.51154 -24.99347 -23.63969 -22.99429 -20.67149 -20.39249 -19.93380 -18.95231 -18.09018 -17.41420 -17.00380 -16.21866 -15.55483 -15.36149 -14.81467 -14.45811 -14.25679 -14.15404 -13.70240 -13.63462 -13.34399 -13.20126 -12.64667 -12.29326 -11.89092 -11.52479 -11.40097 -11.06758 -10.92654 -10.62048 -10.51338 -10.38738 -9.97308 -9.85857 -9.79721 -9.67575 -9.40848 -9.09129 -8.93074 -8.82247 -7.18975 -7.10057 -6.68634 -6.42675 -4.13374 -0.05873 0.81044 1.31410 1.47818 1.60191 2.48837 2.78459 2.96110 3.17837 3.20696 3.24076 3.42922 3.88495 4.08441 4.11241 4.50382 4.50530 4.80823 4.87203 5.01980 5.13543 5.26805 5.56559 5.83367 5.88759 5.93892 6.31085 6.48062 6.62721 6.72918 6.94094 7.07588 7.30203 7.45115 7.50883 7.62941 7.75450 8.10687 8.24981 8.27697 8.29213 8.46500 8.73542 9.07113 9.15429 9.28610 10.46561 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.004512 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.020979 B = 6204.110080 C = 7160.397160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.074 3.926 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.466 4.466 8 H 0.075 0.925 9 C 0.119 3.881 10 C -0.229 4.229 11 C -0.089 4.089 12 C -0.232 4.232 13 C 0.110 3.890 14 N -0.462 5.462 15 C 0.328 3.672 16 C -0.184 4.184 17 C 0.101 3.899 18 N -0.644 5.644 19 H 0.409 0.591 20 C 0.449 3.551 21 C 0.076 3.924 22 N -0.381 5.381 23 C 0.040 3.960 24 C -0.262 4.262 25 S 0.147 5.853 26 N -0.467 5.467 27 C -0.144 4.144 28 H 0.276 0.724 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.184 0.816 35 H 0.186 0.814 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 -6.121 22.334 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.496 4.496 8 H 0.093 0.907 9 C 0.117 3.883 10 C -0.249 4.249 11 C -0.108 4.108 12 C -0.253 4.253 13 C 0.012 3.988 14 N -0.176 5.176 15 C 0.054 3.946 16 C -0.214 4.214 17 C -0.023 4.023 18 N -0.267 5.267 19 H 0.244 0.756 20 C 0.171 3.829 21 C -0.200 4.200 22 N -0.095 5.095 23 C -0.116 4.116 24 C -0.404 4.404 25 S 0.400 5.600 26 N -0.192 5.192 27 C -0.166 4.166 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.171 0.829 33 H 0.190 0.810 34 H 0.200 0.800 35 H 0.203 0.797 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.400 -5.851 20.958 21.805 hybrid contribution 1.385 0.833 0.679 1.753 sum -0.015 -5.019 21.638 22.212 Atomic orbital electron populations 1.69864 1.07334 1.28548 1.37178 1.25844 0.94704 1.00907 0.92671 0.86393 0.80545 0.81185 0.78984 1.19623 1.20389 1.18667 1.19469 0.96485 0.90754 1.42926 0.90735 1.17418 0.91024 0.92012 0.87890 1.20987 1.03695 0.93289 1.06957 1.20282 0.95703 0.96330 0.98459 1.20242 1.01290 0.94453 1.09312 1.18295 0.89627 0.94300 0.96588 1.69797 1.30577 1.17086 1.00096 1.21233 0.85754 0.95923 0.91661 1.22205 0.99952 1.08059 0.91186 1.21707 0.85725 0.99219 0.95659 1.41943 1.04878 1.69697 1.10190 0.75607 1.19146 0.83597 0.93173 0.86992 1.25124 0.94248 1.09234 0.91367 1.66820 0.96773 1.09803 1.36132 1.22000 0.98452 1.01825 0.89301 1.26640 1.00746 1.11600 1.01364 1.83477 1.01050 1.66341 1.09156 1.69714 1.26262 1.17535 1.05642 1.21332 0.98084 0.94993 1.02156 0.91333 0.89267 0.89527 0.89994 0.82866 0.80989 0.79955 0.79699 0.86773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -23.30 10.96 55.54 0.61 -22.69 16 2 C 0.07 2.08 5.20 -17.35 -0.09 1.99 16 3 Si 0.90 20.55 29.58 -169.99 -5.03 15.53 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.26 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.47 -13.72 9.05 -37.74 -0.34 -14.06 16 8 H 0.07 2.10 7.88 -52.49 -0.41 1.68 16 9 C 0.12 3.60 5.54 -106.88 -0.59 3.01 16 10 C -0.23 -6.39 9.79 -38.75 -0.38 -6.77 16 11 C -0.09 -2.32 10.00 -39.73 -0.40 -2.72 16 12 C -0.23 -6.24 10.00 -38.81 -0.39 -6.63 16 13 C 0.11 3.10 5.09 -84.69 -0.43 2.67 16 14 N -0.46 -11.69 10.42 -9.25 -0.10 -11.78 16 15 C 0.33 6.92 7.56 -155.53 -1.18 5.74 16 16 C -0.18 -2.64 10.28 -37.34 -0.38 -3.03 16 17 C 0.10 0.95 11.29 -16.52 -0.19 0.76 16 18 N -0.64 -6.45 5.33 -10.72 -0.06 -6.51 16 19 H 0.41 2.38 7.84 -40.82 -0.32 2.06 16 20 C 0.45 6.91 7.65 -154.86 -1.19 5.73 16 21 C 0.08 1.06 7.44 -14.44 -0.11 0.95 16 22 N -0.38 -6.28 10.57 -11.52 -0.12 -6.40 16 23 C 0.04 0.48 11.24 -19.43 -0.22 0.26 16 24 C -0.26 -2.18 11.08 29.26 0.32 -1.86 16 25 S 0.15 1.17 22.21 -107.50 -2.39 -1.22 16 26 N -0.47 -9.82 9.43 -9.07 -0.09 -9.90 16 27 C -0.14 -4.36 8.61 -38.40 -0.33 -4.69 16 28 H 0.28 7.33 8.30 -40.82 -0.34 6.99 16 29 H 0.09 2.31 8.06 -52.48 -0.42 1.89 16 30 H 0.09 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.08 2.07 8.06 -52.48 -0.42 1.64 16 32 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.18 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.19 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.11 3.65 6.28 -52.48 -0.33 3.33 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -39.55 336.35 -11.14 -50.69 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -3.16 Total: 5.87 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -5.88 Total: -18.65 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.25 Total: -57.29 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.53 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.39 Total: -1.22 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -39.55 -11.14 -50.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307121258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.149 kcal (2) G-P(sol) polarization free energy of solvation -39.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds