Wall clock time and date at job start Tue Mar 31 2020 13:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86800 * 120.00223 * 2 1 4 4 H 1.48500 * 109.47007 * 270.00157 * 3 2 1 5 5 H 1.48497 * 109.47041 * 30.00310 * 3 2 1 6 6 H 1.48497 * 109.46957 * 150.00338 * 3 2 1 7 7 C 1.39891 * 119.99610 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99919 * 166.35699 * 7 2 1 9 9 C 1.41441 * 119.99894 * 346.36007 * 7 2 1 10 10 C 1.40891 * 120.15852 * 151.78780 * 9 7 2 11 11 C 1.37762 * 120.09525 * 179.97438 * 10 9 7 12 12 C 1.38294 * 120.42662 * 0.27700 * 11 10 9 13 13 C 1.40239 * 120.32073 * 359.49124 * 12 11 10 14 14 N 1.36398 * 120.05441 * 180.23104 * 13 12 11 15 15 C 1.32977 * 120.00133 * 94.13157 * 14 13 12 16 16 C 1.46639 * 120.51146 * 185.17749 * 15 14 13 17 17 C 1.35008 * 118.41321 * 180.02562 * 16 15 14 18 18 N 1.36725 * 119.28290 * 359.97438 * 17 16 15 19 19 H 0.97008 * 119.50349 * 179.97438 * 18 17 16 20 20 C 1.36465 * 121.00723 * 359.97438 * 18 17 16 21 21 C 1.47211 * 119.13540 * 180.02562 * 20 18 17 22 22 N 1.30578 * 125.54244 * 179.97438 * 21 20 18 23 23 C 1.30877 * 115.85042 * 179.97438 * 22 21 20 24 24 C 1.34062 * 115.79941 * 359.97438 * 23 22 21 25 25 S 1.71063 * 109.12374 * 359.76782 * 24 23 22 26 26 N 1.31543 * 121.72922 * 359.74988 * 20 18 17 27 27 C 1.39289 * 119.89442 * 0.48369 * 13 12 11 28 28 H 0.97007 * 119.99499 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.95274 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.78848 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.84276 * 179.72420 * 12 11 10 32 32 H 1.08000 * 120.79023 * 359.97438 * 16 15 14 33 33 H 1.07995 * 120.35788 * 179.97438 * 17 16 15 34 34 H 1.08003 * 122.10394 * 180.02562 * 23 22 21 35 35 H 1.07996 * 125.43306 * 179.97438 * 24 23 22 36 36 H 1.08003 * 120.20925 * 179.74849 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4402 2.6526 0.7001 6 1 3.5402 1.4400 0.7000 7 6 2.0079 -1.2115 -0.0005 8 1 3.0651 -1.2247 -0.2212 9 6 1.3306 -2.4193 0.2878 10 6 1.7904 -3.6356 -0.2544 11 6 1.1300 -4.8112 0.0277 12 6 0.0096 -4.8080 0.8384 13 6 -0.4606 -3.6081 1.3914 14 7 -1.5634 -3.6118 2.1941 15 6 -1.4247 -3.6927 3.5142 16 6 -2.6017 -3.8115 4.3806 17 6 -2.4119 -3.8901 5.7149 18 7 -1.1388 -3.8574 6.2124 19 1 -0.9987 -3.9133 7.1707 20 6 -0.0620 -3.7472 5.3814 21 6 1.2907 -3.7163 5.9614 22 7 2.4039 -3.6150 5.2863 23 6 3.5031 -3.6052 5.9966 24 6 3.3409 -3.6998 7.3240 25 16 1.6706 -3.8015 7.6787 26 7 -0.2007 -3.6732 4.0754 27 6 0.1971 -2.4117 1.1154 28 1 -0.4850 0.8401 0.0004 29 1 2.6620 -3.6464 -0.8921 30 1 1.4866 -5.7407 -0.3909 31 1 -0.5035 -5.7345 1.0498 32 1 -3.5968 -3.8347 3.9613 33 1 -3.2566 -3.9780 6.3822 34 1 4.4795 -3.5249 5.5421 35 1 4.1375 -3.7069 8.0532 36 1 -0.1630 -1.4841 1.5353 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307121258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:08 Heat of formation + Delta-G solvation = 119.178310 kcal Electronic energy + Delta-G solvation = -23522.041984 eV Core-core repulsion = 20097.785135 eV Total energy + Delta-G solvation = -3424.256849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 324.074 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.86335 -40.54696 -39.46457 -36.90261 -35.39081 -34.40782 -33.08111 -31.42668 -31.02183 -29.34776 -27.51967 -27.14931 -24.83745 -24.29222 -22.77626 -21.69817 -21.31052 -20.04601 -19.40388 -18.87968 -18.27302 -17.72753 -17.01428 -16.52628 -16.47914 -16.41652 -15.51839 -15.41575 -15.03077 -14.80954 -14.74706 -14.42999 -14.34256 -14.00905 -13.53529 -13.03365 -12.91700 -12.73263 -12.66549 -12.60767 -12.26807 -11.95355 -11.72831 -11.37841 -11.27094 -10.99830 -10.83268 -10.63339 -10.51945 -9.77897 -9.28082 -8.80985 -8.55574 -8.47848 -6.36505 -1.01390 -0.03409 0.31092 0.52319 0.55672 0.98520 1.16076 1.29668 1.45043 1.46292 1.50120 1.83431 2.19079 2.73680 2.76989 2.93226 3.45698 3.54712 3.79161 4.01553 4.18724 4.30112 4.32378 4.38082 4.49245 4.63021 4.82490 4.86940 5.02024 5.08213 5.13624 5.27245 5.41641 5.54110 5.71419 5.98264 6.08191 6.11463 6.20908 6.36934 6.64705 6.68498 6.95045 7.03979 7.04920 7.46348 8.39576 Molecular weight = 324.07amu Principal moments of inertia in cm(-1) A = 0.010469 B = 0.004512 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.020979 B = 6204.110080 C = 7160.397160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.026 3.974 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.504 4.504 8 H 0.076 0.924 9 C 0.091 3.909 10 C -0.256 4.256 11 C -0.082 4.082 12 C -0.256 4.256 13 C 0.139 3.861 14 N -0.560 5.560 15 C 0.349 3.651 16 C -0.237 4.237 17 C 0.165 3.835 18 N -0.612 5.612 19 H 0.437 0.563 20 C 0.467 3.533 21 C 0.002 3.998 22 N -0.446 5.446 23 C 0.003 3.997 24 C -0.235 4.235 25 S 0.287 5.713 26 N -0.555 5.555 27 C -0.181 4.181 28 H 0.282 0.718 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.092 0.908 32 H 0.168 0.832 33 H 0.253 0.747 34 H 0.187 0.813 35 H 0.231 0.769 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -6.331 28.306 29.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.186 4.186 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.534 4.534 8 H 0.094 0.906 9 C 0.088 3.912 10 C -0.276 4.276 11 C -0.101 4.101 12 C -0.277 4.277 13 C 0.039 3.961 14 N -0.279 5.279 15 C 0.078 3.922 16 C -0.267 4.267 17 C 0.039 3.961 18 N -0.234 5.234 19 H 0.277 0.723 20 C 0.190 3.810 21 C -0.270 4.270 22 N -0.162 5.162 23 C -0.153 4.153 24 C -0.377 4.377 25 S 0.540 5.460 26 N -0.282 5.282 27 C -0.203 4.203 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.185 0.815 33 H 0.269 0.731 34 H 0.204 0.796 35 H 0.247 0.753 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.396 -6.098 27.060 27.774 hybrid contribution 1.395 0.741 -0.460 1.645 sum -0.001 -5.357 26.600 27.134 Atomic orbital electron populations 1.69997 1.09288 1.29928 1.37418 1.26898 0.95544 1.04868 0.91282 0.85154 0.78872 0.75439 0.79830 1.17901 1.19162 1.18065 1.19769 0.96742 0.91978 1.44946 0.90609 1.17859 0.91633 0.93374 0.88306 1.21160 1.04776 0.93433 1.08238 1.20642 0.94916 0.97159 0.97356 1.20599 1.01985 0.95012 1.10078 1.18458 0.88846 0.93285 0.95479 1.69592 1.28492 1.27649 1.02132 1.21930 0.88160 0.90935 0.91140 1.22328 0.98516 1.13278 0.92550 1.22853 0.86666 0.91731 0.94808 1.42179 1.04333 1.65525 1.11367 0.72254 1.19592 0.85855 0.89218 0.86307 1.25134 0.93002 1.13372 0.95478 1.66737 0.98730 1.10791 1.39921 1.22142 0.97854 1.04470 0.90870 1.27338 1.03047 1.06575 1.00733 1.82865 0.99060 1.62113 1.01991 1.69661 1.27006 1.22664 1.08887 1.21139 0.99911 0.94961 1.04301 0.90748 0.88165 0.86017 0.89006 0.81489 0.73132 0.79583 0.75285 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -52.29 10.96 21.82 0.24 -52.05 16 2 C 0.03 1.56 5.20 85.24 0.44 2.00 16 3 Si 0.99 44.04 29.58 68.60 2.03 46.07 16 4 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.50 -31.99 9.05 23.46 0.21 -31.77 16 8 H 0.08 4.57 7.88 -2.91 -0.02 4.55 16 9 C 0.09 5.98 5.54 -21.33 -0.12 5.87 16 10 C -0.26 -15.37 9.79 22.81 0.22 -15.15 16 11 C -0.08 -4.56 10.00 22.17 0.22 -4.33 16 12 C -0.26 -14.83 10.00 22.77 0.23 -14.60 16 13 C 0.14 8.54 5.09 39.17 0.20 8.74 16 14 N -0.56 -31.00 10.42 -183.16 -1.91 -32.91 16 15 C 0.35 15.60 7.56 136.29 1.03 16.63 16 16 C -0.24 -6.58 10.28 23.72 0.24 -6.34 16 17 C 0.17 2.28 11.29 83.19 0.94 3.22 16 18 N -0.61 -9.59 5.33 -187.82 -1.00 -10.59 16 19 H 0.44 2.20 7.84 -92.70 -0.73 1.47 16 20 C 0.47 14.03 7.65 136.31 1.04 15.07 16 21 C 0.00 0.06 7.44 87.24 0.65 0.71 16 22 N -0.45 -15.12 10.57 -190.36 -2.01 -17.13 16 23 C 0.00 0.06 11.24 83.88 0.94 1.00 16 24 C -0.24 -2.91 11.08 66.87 0.74 -2.17 16 25 S 0.29 3.09 22.21 -56.49 -1.25 1.84 16 26 N -0.56 -24.68 9.43 -182.62 -1.72 -26.40 16 27 C -0.18 -12.09 8.61 23.04 0.20 -11.89 16 28 H 0.28 15.94 8.30 -92.70 -0.77 15.17 16 29 H 0.10 5.56 8.06 -2.91 -0.02 5.53 16 30 H 0.12 5.67 8.06 -2.91 -0.02 5.65 16 31 H 0.09 4.96 8.06 -2.91 -0.02 4.94 16 32 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 33 H 0.25 -0.29 8.06 -2.91 -0.02 -0.32 16 34 H 0.19 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.23 0.71 8.06 -2.91 -0.02 0.68 16 36 H 0.08 5.74 6.28 -2.91 -0.02 5.72 16 Total: -1.00 -105.86 336.35 1.99 -103.87 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.42 Total: 20.31 kcal Atomic # 6 Polarization: -40.19 SS G_CDS: 7.20 Total: -33.00 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -6.40 Total: -139.09 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.25 Total: 1.84 kcal Total: -105.86 1.99 -103.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307121258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.052 kcal (2) G-P(sol) polarization free energy of solvation -105.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds