Wall clock time and date at job start Tue Mar 31 2020 14:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99614 * 3 2 1 6 6 H 1.48490 * 109.47155 * 59.99256 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00011 * 197.72795 * 7 2 1 9 9 C 1.41400 * 119.99509 * 17.72383 * 7 2 1 10 10 C 1.40707 * 120.24843 * 24.53120 * 9 7 2 11 11 C 1.37623 * 119.74849 * 180.22492 * 10 9 7 12 12 C 1.38630 * 120.24117 * 359.52215 * 11 10 9 13 13 C 1.50700 * 119.74498 * 180.22751 * 12 11 10 14 14 O 1.42902 * 109.47077 * 90.00003 * 13 12 11 15 15 C 1.35457 * 117.00128 * 179.97438 * 14 13 12 16 16 N 1.32328 * 119.19641 * 0.02562 * 15 14 13 17 17 C 1.32285 * 120.76025 * 179.97438 * 16 15 14 18 18 C 1.38622 * 119.17194 * 0.02562 * 17 16 15 19 19 C 1.38562 * 118.52339 * 359.97438 * 18 17 16 20 20 C 1.50694 * 120.41367 * 180.02562 * 19 18 17 21 21 F 1.39905 * 109.47160 * 90.00518 * 20 19 18 22 22 F 1.39897 * 109.47245 * 209.99798 * 20 19 18 23 23 F 1.39895 * 109.47366 * 330.00495 * 20 19 18 24 24 N 1.32305 * 119.19525 * 179.72834 * 15 14 13 25 25 C 1.38629 * 120.50679 * 0.25281 * 12 11 10 26 26 C 1.37618 * 120.24753 * 359.97438 * 25 12 11 27 27 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12916 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87639 * 179.79220 * 11 10 9 30 30 H 1.09000 * 109.47339 * 210.00089 * 13 12 11 31 31 H 1.09003 * 109.47470 * 330.00527 * 13 12 11 32 32 H 1.07997 * 120.41571 * 179.97438 * 17 16 15 33 33 H 1.08002 * 120.73556 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.88011 * 179.97438 * 25 12 11 35 35 H 1.08002 * 120.12831 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2853 9 6 1.3512 -2.4076 -0.3717 10 6 0.2202 -2.3643 -1.2076 11 6 -0.4139 -3.5339 -1.5598 12 6 0.0638 -4.7522 -1.1021 13 6 -0.6361 -6.0265 -1.4988 14 8 -0.0652 -6.5264 -2.7097 15 6 -0.5842 -7.6750 -3.2059 16 7 -1.5753 -8.2676 -2.5598 17 6 -2.1056 -9.3900 -3.0169 18 6 -1.6098 -9.9441 -4.1869 19 6 -0.5716 -9.2969 -4.8374 20 6 -0.0006 -9.8613 -6.1126 21 9 -0.6973 -9.3382 -7.2072 22 9 1.3512 -9.5150 -6.2117 23 9 -0.1255 -11.2546 -6.1030 24 7 -0.0918 -8.1738 -4.3280 25 6 1.1801 -4.8072 -0.2819 26 6 1.8272 -3.6499 0.0867 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1510 -1.4166 -1.5689 29 1 -1.2842 -3.5028 -2.1985 30 1 -0.5176 -6.7674 -0.7082 31 1 -1.6964 -5.8259 -1.6529 32 1 -2.9140 -9.8692 -2.4848 33 1 -2.0236 -10.8599 -4.5825 34 1 1.5433 -5.7618 0.0691 35 1 2.6969 -3.6951 0.7254 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307294424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:27 Heat of formation + Delta-G solvation = -111.528066 kcal Electronic energy + Delta-G solvation = -25483.843521 eV Core-core repulsion = 21032.680130 eV Total energy + Delta-G solvation = -4451.163391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.49498 -48.05102 -47.90634 -41.52846 -38.61592 -37.31970 -34.49254 -33.97358 -32.20810 -30.63775 -29.40644 -27.80186 -27.17915 -24.44787 -24.15716 -22.93593 -21.13654 -20.22046 -19.43278 -19.06777 -18.86723 -17.75885 -17.43660 -17.31711 -16.34749 -16.02576 -15.45764 -14.93130 -14.85146 -14.69261 -14.51235 -14.38603 -14.20918 -14.07953 -14.06258 -13.96519 -13.13925 -13.10466 -12.87507 -12.53326 -12.06978 -11.61050 -11.53602 -11.43990 -11.33798 -11.16861 -11.01610 -10.60913 -10.55203 -9.78542 -9.62887 -9.51973 -9.27974 -9.20056 -7.60622 -7.50702 -6.91147 -4.50286 0.27149 0.66866 1.81165 2.35284 2.81172 2.97981 3.01478 3.06590 3.11616 3.25184 3.25921 3.61717 3.83251 3.86068 4.01755 4.34594 4.43443 4.57619 4.74027 5.11418 5.50264 5.57336 5.58986 5.68442 5.98887 6.20505 6.27242 6.32600 6.83609 6.93796 7.11870 7.15695 7.22395 7.47864 7.69967 7.76577 7.92657 7.96096 8.15308 8.50285 8.74801 8.82748 10.02766 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.025403 B = 0.002279 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.987715 B =12280.564278 C =12718.993210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.072 4.072 12 C -0.242 4.242 13 C 0.141 3.859 14 O -0.274 6.274 15 C 0.518 3.482 16 N -0.545 5.545 17 C 0.200 3.800 18 C -0.238 4.238 19 C 0.128 3.872 20 C 0.527 3.473 21 F -0.165 7.165 22 F -0.158 7.158 23 F -0.167 7.167 24 N -0.493 5.493 25 C -0.059 4.059 26 C -0.231 4.231 27 H 0.283 0.717 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.185 0.815 33 H 0.161 0.839 34 H 0.089 0.911 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 -17.435 -7.629 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.118 3.882 10 C -0.190 4.190 11 C -0.091 4.091 12 C -0.243 4.243 13 C 0.068 3.932 14 O -0.173 6.173 15 C 0.218 3.782 16 N -0.275 5.275 17 C 0.032 3.968 18 C -0.261 4.261 19 C -0.023 4.023 20 C 0.471 3.529 21 F -0.147 7.147 22 F -0.139 7.139 23 F -0.148 7.148 24 N -0.219 5.219 25 C -0.078 4.078 26 C -0.250 4.250 27 H 0.094 0.906 28 H 0.138 0.862 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.202 0.798 33 H 0.179 0.821 34 H 0.107 0.893 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.101 -16.103 -7.275 18.392 hybrid contribution -0.102 -0.118 -0.377 0.408 sum -5.204 -16.221 -7.652 18.675 Atomic orbital electron populations 1.69828 1.07716 1.29522 1.33779 1.25995 0.94785 1.01641 0.92021 0.86218 0.81061 0.80571 0.78701 1.18227 1.19525 1.19843 1.19737 0.98256 0.91191 1.38996 0.90029 1.17708 0.90729 0.92115 0.87696 1.21298 0.99400 0.96769 1.01544 1.20534 0.98062 0.92544 0.97915 1.18614 1.03688 0.91186 1.10822 1.21578 0.96429 0.93944 0.81260 1.86497 1.56913 1.31041 1.42887 1.20877 0.85002 0.87231 0.85137 1.68323 1.12231 1.12099 1.34801 1.23141 0.94829 0.88193 0.90604 1.22412 0.99812 1.04386 0.99498 1.21101 0.94315 0.92259 0.94578 1.17715 0.76647 0.75582 0.82945 1.93264 1.79019 1.86430 1.55958 1.93279 1.32535 1.91715 1.96336 1.93223 1.95725 1.29222 1.96625 1.67051 1.30738 1.11739 1.12400 1.20383 0.94035 0.96659 0.96718 1.20954 1.03831 0.92753 1.07485 0.90619 0.86199 0.89289 0.91769 0.91696 0.79840 0.82097 0.89263 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.60 10.95 55.55 0.61 -18.99 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.45 -11.71 9.06 -37.74 -0.34 -12.05 16 8 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 9 C 0.12 3.15 5.57 -106.83 -0.60 2.55 16 10 C -0.17 -4.37 8.70 -38.87 -0.34 -4.71 16 11 C -0.07 -1.67 9.67 -39.66 -0.38 -2.05 16 12 C -0.24 -5.29 5.53 -104.33 -0.58 -5.87 16 13 C 0.14 2.58 5.40 36.01 0.19 2.78 16 14 O -0.27 -5.24 10.18 -18.06 -0.18 -5.42 16 15 C 0.52 8.50 8.49 -91.26 -0.77 7.72 16 16 N -0.54 -7.36 9.23 -14.73 -0.14 -7.49 16 17 C 0.20 1.79 11.30 -17.22 -0.19 1.60 16 18 C -0.24 -2.04 9.51 -39.32 -0.37 -2.42 16 19 C 0.13 1.54 6.32 -82.27 -0.52 1.02 16 20 C 0.53 5.75 3.45 36.00 0.12 5.87 16 21 F -0.17 -1.83 17.30 2.25 0.04 -1.79 16 22 F -0.16 -2.00 17.07 2.25 0.04 -1.97 16 23 F -0.17 -1.50 16.53 2.25 0.04 -1.47 16 24 N -0.49 -7.81 10.13 -10.95 -0.11 -7.93 16 25 C -0.06 -1.33 9.67 -39.66 -0.38 -1.71 16 26 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 27 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 28 H 0.12 3.15 6.16 -52.49 -0.32 2.82 16 29 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.06 1.08 8.03 -51.93 -0.42 0.67 16 31 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 32 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.16 0.80 7.68 -52.49 -0.40 0.39 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 328.25 15.07 4.95 4.95 Total: -1.00 -28.70 328.25 -7.23 -35.93 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -2.80 Total: 2.62 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -4.63 Total: -11.49 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.36 Total: -34.41 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.18 Total: -5.42 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.22 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.70 -7.23 -35.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307294424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.599 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds