Wall clock time and date at job start Tue Mar 31 2020 14:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48499 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46931 * 299.99614 * 3 2 1 6 6 H 1.48490 * 109.47155 * 59.99256 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00011 * 197.72795 * 7 2 1 9 9 C 1.41400 * 119.99509 * 17.72383 * 7 2 1 10 10 C 1.40707 * 120.24843 * 24.53120 * 9 7 2 11 11 C 1.37623 * 119.74849 * 180.22492 * 10 9 7 12 12 C 1.38630 * 120.24117 * 359.52215 * 11 10 9 13 13 C 1.50700 * 119.74498 * 180.22751 * 12 11 10 14 14 O 1.42902 * 109.47077 * 90.00003 * 13 12 11 15 15 C 1.35457 * 117.00128 * 179.97438 * 14 13 12 16 16 N 1.32328 * 119.19641 * 0.02562 * 15 14 13 17 17 C 1.32285 * 120.76025 * 179.97438 * 16 15 14 18 18 C 1.38622 * 119.17194 * 0.02562 * 17 16 15 19 19 C 1.38562 * 118.52339 * 359.97438 * 18 17 16 20 20 C 1.50694 * 120.41367 * 180.02562 * 19 18 17 21 21 F 1.39905 * 109.47160 * 90.00518 * 20 19 18 22 22 F 1.39897 * 109.47245 * 209.99798 * 20 19 18 23 23 F 1.39895 * 109.47366 * 330.00495 * 20 19 18 24 24 N 1.32305 * 119.19525 * 179.72834 * 15 14 13 25 25 C 1.38629 * 120.50679 * 0.25281 * 12 11 10 26 26 C 1.37618 * 120.24753 * 359.97438 * 25 12 11 27 27 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.12916 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87639 * 179.79220 * 11 10 9 30 30 H 1.09000 * 109.47339 * 210.00089 * 13 12 11 31 31 H 1.09003 * 109.47470 * 330.00527 * 13 12 11 32 32 H 1.07997 * 120.41571 * 179.97438 * 17 16 15 33 33 H 1.08002 * 120.73556 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.88011 * 179.97438 * 25 12 11 35 35 H 1.08002 * 120.12831 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8835 2.3964 1.2123 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2341 0.2853 9 6 1.3512 -2.4076 -0.3717 10 6 0.2202 -2.3643 -1.2076 11 6 -0.4139 -3.5339 -1.5598 12 6 0.0638 -4.7522 -1.1021 13 6 -0.6361 -6.0265 -1.4988 14 8 -0.0652 -6.5264 -2.7097 15 6 -0.5842 -7.6750 -3.2059 16 7 -1.5753 -8.2676 -2.5598 17 6 -2.1056 -9.3900 -3.0169 18 6 -1.6098 -9.9441 -4.1869 19 6 -0.5716 -9.2969 -4.8374 20 6 -0.0006 -9.8613 -6.1126 21 9 -0.6973 -9.3382 -7.2072 22 9 1.3512 -9.5150 -6.2117 23 9 -0.1255 -11.2546 -6.1030 24 7 -0.0918 -8.1738 -4.3280 25 6 1.1801 -4.8072 -0.2819 26 6 1.8272 -3.6499 0.0867 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1510 -1.4166 -1.5689 29 1 -1.2842 -3.5028 -2.1985 30 1 -0.5176 -6.7674 -0.7082 31 1 -1.6964 -5.8259 -1.6529 32 1 -2.9140 -9.8692 -2.4848 33 1 -2.0236 -10.8599 -4.5825 34 1 1.5433 -5.7618 0.0691 35 1 2.6969 -3.6951 0.7254 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307294424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:27 Heat of formation + Delta-G solvation = -129.399867 kcal Electronic energy + Delta-G solvation = -25484.618500 eV Core-core repulsion = 21032.680130 eV Total energy + Delta-G solvation = -4451.938370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.34725 -48.86084 -48.81549 -42.50863 -40.05221 -38.95811 -35.76457 -35.42863 -33.31876 -32.25071 -31.25535 -29.00603 -28.51733 -25.85520 -25.23639 -24.05572 -22.98802 -21.93063 -20.44614 -20.00238 -19.72675 -19.30064 -18.73834 -18.36807 -17.57831 -17.20748 -16.78424 -16.35454 -15.81179 -15.73292 -15.61661 -15.55011 -15.37303 -15.23109 -14.95353 -14.93707 -14.64781 -14.62486 -14.18148 -13.89445 -13.74594 -13.35999 -13.04879 -12.84535 -12.53327 -12.40761 -12.38951 -12.18944 -12.14746 -11.53878 -11.34375 -11.07817 -10.60860 -10.26083 -9.47148 -9.37630 -8.71990 -6.42545 -0.61558 -0.19408 0.59318 1.04153 1.09384 1.37206 1.42226 1.52931 1.75555 2.17889 2.32463 2.34609 2.63871 2.79134 2.93153 3.15942 3.52859 3.63753 3.73586 4.03208 4.11902 4.12864 4.32457 4.45137 4.47743 4.53093 4.91898 4.97613 5.09510 5.27597 5.36059 5.37526 5.62102 5.82495 6.02988 6.07757 6.11360 6.28991 6.61483 6.73482 6.85656 6.94035 8.25179 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.025403 B = 0.002279 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.987715 B =12280.564278 C =12718.993210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.035 3.965 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.263 1.263 7 C -0.492 4.492 8 H 0.079 0.921 9 C 0.089 3.911 10 C -0.195 4.195 11 C -0.078 4.078 12 C -0.236 4.236 13 C 0.155 3.845 14 O -0.306 6.306 15 C 0.495 3.505 16 N -0.556 5.556 17 C 0.207 3.793 18 C -0.204 4.204 19 C 0.103 3.897 20 C 0.532 3.468 21 F -0.167 7.167 22 F -0.173 7.173 23 F -0.152 7.152 24 N -0.532 5.532 25 C -0.063 4.063 26 C -0.247 4.247 27 H 0.291 0.709 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.207 0.793 34 H 0.118 0.882 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 -19.882 -7.857 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.520 4.520 8 H 0.097 0.903 9 C 0.086 3.914 10 C -0.214 4.214 11 C -0.097 4.097 12 C -0.238 4.238 13 C 0.081 3.919 14 O -0.207 6.207 15 C 0.194 3.806 16 N -0.285 5.285 17 C 0.040 3.960 18 C -0.226 4.226 19 C -0.044 4.044 20 C 0.477 3.523 21 F -0.149 7.149 22 F -0.154 7.154 23 F -0.133 7.133 24 N -0.259 5.259 25 C -0.081 4.081 26 C -0.267 4.267 27 H 0.102 0.898 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.255 0.745 33 H 0.224 0.776 34 H 0.136 0.864 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.537 -18.608 -7.530 21.111 hybrid contribution 0.193 0.298 -0.408 0.541 sum -6.344 -18.309 -7.938 20.940 Atomic orbital electron populations 1.69868 1.09081 1.30882 1.34316 1.26835 0.95547 1.04724 0.91009 0.85117 0.79406 0.75881 0.79090 1.18150 1.18850 1.18722 1.19958 0.98473 0.92407 1.41196 0.90267 1.18058 0.91530 0.93241 0.88552 1.21272 1.00368 0.97041 1.02768 1.20786 0.98459 0.92525 0.97915 1.19025 1.02933 0.92506 1.09296 1.21324 0.96120 0.92518 0.81903 1.86313 1.58130 1.33235 1.43060 1.20734 0.86626 0.87202 0.86087 1.68343 1.11575 1.13685 1.34937 1.24137 0.94877 0.86458 0.90554 1.22984 0.97005 1.04553 0.98065 1.21430 0.95738 0.92000 0.95247 1.17628 0.75912 0.76113 0.82689 1.93260 1.78940 1.86591 1.56067 1.93247 1.33799 1.91965 1.96392 1.93251 1.95587 1.27894 1.96554 1.66857 1.32376 1.13718 1.12972 1.20715 0.93847 0.97233 0.96292 1.21176 1.04525 0.92981 1.07979 0.89797 0.87791 0.87606 0.90188 0.90727 0.74539 0.77575 0.86415 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.21 10.95 21.83 0.24 -41.97 16 2 C 0.04 1.75 5.14 85.26 0.44 2.19 16 3 Si 0.98 37.77 29.59 68.60 2.03 39.81 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.49 -26.54 9.06 23.46 0.21 -26.32 16 8 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 9 C 0.09 4.85 5.57 -21.29 -0.12 4.73 16 10 C -0.20 -10.43 8.70 22.73 0.20 -10.23 16 11 C -0.08 -3.72 9.67 22.22 0.21 -3.50 16 12 C -0.24 -10.33 5.53 -19.68 -0.11 -10.44 16 13 C 0.15 5.50 5.40 71.24 0.38 5.89 16 14 O -0.31 -11.65 10.18 -87.55 -0.89 -12.54 16 15 C 0.50 15.73 8.49 180.57 1.53 17.26 16 16 N -0.56 -13.47 9.23 -313.46 -2.89 -16.36 16 17 C 0.21 2.73 11.30 84.72 0.96 3.68 16 18 C -0.20 -2.58 9.51 22.44 0.21 -2.37 16 19 C 0.10 2.26 6.32 42.56 0.27 2.53 16 20 C 0.53 10.69 3.45 71.23 0.25 10.94 16 21 F -0.17 -3.45 17.30 44.97 0.78 -2.67 16 22 F -0.17 -4.33 17.07 44.97 0.77 -3.56 16 23 F -0.15 -2.29 16.53 44.97 0.74 -1.55 16 24 N -0.53 -16.50 10.13 -301.53 -3.05 -19.56 16 25 C -0.06 -2.79 9.67 22.22 0.21 -2.58 16 26 C -0.25 -12.29 9.80 22.73 0.22 -12.07 16 27 H 0.29 13.46 8.30 -92.70 -0.77 12.69 16 28 H 0.10 5.77 6.16 -2.91 -0.02 5.76 16 29 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 30 H 0.08 2.55 8.03 -2.39 -0.02 2.53 16 31 H 0.07 2.46 8.03 -2.39 -0.02 2.44 16 32 H 0.24 0.47 8.06 -2.91 -0.02 0.45 16 33 H 0.21 0.71 7.68 -2.91 -0.02 0.68 16 34 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 35 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -66.98 328.25 3.75 -63.23 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.16 Total: 15.47 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 4.88 Total: -20.29 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -5.71 Total: -77.89 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.89 Total: -12.54 kcal Atomic # 9 Polarization: -10.07 SS G_CDS: 2.29 Total: -7.78 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.81 kcal Total: -66.98 3.75 -63.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307294424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.169 kcal (2) G-P(sol) polarization free energy of solvation -66.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds