Wall clock time and date at job start Tue Mar 31 2020 14:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99920 * 2 1 4 4 H 1.48502 * 109.46946 * 274.65830 * 3 2 1 5 5 H 1.48500 * 109.47366 * 34.65685 * 3 2 1 6 6 H 1.48505 * 109.47273 * 154.66140 * 3 2 1 7 7 C 1.39945 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99412 * 162.23866 * 7 2 1 9 9 C 1.41396 * 120.00430 * 342.23374 * 7 2 1 10 10 C 1.40715 * 120.24371 * 155.29137 * 9 7 2 11 11 C 1.37612 * 119.74513 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24957 * 0.02562 * 11 10 9 13 13 S 1.76192 * 119.75074 * 179.97438 * 12 11 10 14 14 O 1.42094 * 106.40575 * 203.54141 * 13 12 11 15 15 O 1.42103 * 106.40334 * 336.46317 * 13 12 11 16 16 N 1.65602 * 107.21783 * 90.00144 * 13 12 11 17 17 N 1.40102 * 119.99957 * 59.99996 * 16 13 12 18 18 C 1.34771 * 120.00175 * 125.00038 * 17 16 13 19 19 O 1.21281 * 120.00003 * 0.02562 * 18 17 16 20 20 C 1.50703 * 120.00238 * 179.97438 * 18 17 16 21 21 C 1.53776 * 113.61744 * 279.13854 * 20 18 17 22 22 C 1.53957 * 87.02010 * 220.04705 * 21 20 18 23 23 C 1.53775 * 113.61490 * 181.53048 * 20 18 17 24 24 C 1.38633 * 120.49743 * 0.25206 * 12 11 10 25 25 C 1.37617 * 120.24902 * 359.44727 * 24 12 11 26 26 H 0.96995 * 120.00034 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.12819 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.88000 * 179.97438 * 11 10 9 29 29 H 0.97006 * 120.00240 * 240.00330 * 16 13 12 30 30 H 0.97000 * 119.99802 * 304.99840 * 17 16 13 31 31 H 1.09003 * 112.84287 * 50.33763 * 20 18 17 32 32 H 1.08999 * 113.61591 * 334.57124 * 21 20 18 33 33 H 1.09004 * 113.61425 * 105.46832 * 21 20 18 34 34 H 1.09000 * 113.53266 * 270.81042 * 22 21 20 35 35 H 1.08999 * 113.66043 * 139.93394 * 22 21 20 36 36 H 1.09002 * 113.61523 * 254.53452 * 23 20 18 37 37 H 1.09000 * 113.61554 * 25.35176 * 23 20 18 38 38 H 1.07996 * 119.87251 * 179.70151 * 24 12 11 39 39 H 1.08007 * 120.13030 * 180.27330 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4924 2.6222 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2344 -0.2848 9 6 1.3515 -2.4072 0.3747 10 6 1.8217 -3.6494 -0.0899 11 6 1.1747 -4.8061 0.2803 12 6 0.0633 -4.7508 1.1072 13 16 -0.7555 -6.2399 1.5723 14 8 -2.0867 -5.8769 1.9116 15 8 -0.4426 -7.1993 0.5718 16 7 -0.0456 -6.7736 2.9701 17 7 -0.0608 -5.9672 4.1156 18 6 -0.5598 -6.4479 5.2716 19 8 -0.9953 -7.5787 5.3203 20 6 -0.5756 -5.5806 6.5039 21 6 0.7737 -5.5314 7.2400 22 6 -0.0308 -5.5913 8.5514 23 6 -1.1416 -6.2870 7.7471 24 6 -0.4121 -3.5321 1.5661 25 6 0.2228 -2.3631 1.2138 26 1 -0.4850 0.8400 -0.0004 27 1 2.6867 -3.6947 -0.7351 28 1 1.5335 -5.7607 -0.0754 29 1 0.3808 -7.6446 2.9957 30 1 0.2879 -5.0628 4.0767 31 1 -1.0110 -4.5976 6.3241 32 1 1.3964 -6.4095 7.0693 33 1 1.3135 -4.5948 7.1002 34 1 -0.3161 -4.6106 8.9321 35 1 0.4207 -6.2273 9.3128 36 1 -2.1459 -5.9595 8.0160 37 1 -1.0447 -7.3722 7.7146 38 1 -1.2816 -3.5003 2.2059 39 1 -0.1466 -1.4150 1.5761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319338536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:31 Heat of formation + Delta-G solvation = -54.704809 kcal Electronic energy + Delta-G solvation = -24907.534473 eV Core-core repulsion = 21136.135815 eV Total energy + Delta-G solvation = -3771.398658 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.27517 -37.72426 -37.66335 -36.62377 -35.38700 -35.26902 -34.15844 -30.42099 -30.36114 -29.58934 -26.45337 -25.94714 -25.79918 -21.74364 -21.40839 -21.25589 -19.87441 -19.16209 -17.89651 -17.70471 -17.66938 -17.14025 -16.38546 -15.63125 -15.60240 -15.10060 -14.67862 -14.34762 -14.21602 -13.53845 -13.32537 -13.08031 -12.65910 -12.55903 -12.37730 -12.31377 -11.95483 -11.87394 -11.58148 -11.49761 -11.41462 -11.40787 -11.32802 -11.01289 -10.94129 -10.74732 -10.61235 -10.52243 -9.85711 -9.79544 -9.62592 -9.55632 -8.82558 -8.09474 -7.83758 -7.25353 -4.92000 0.85157 2.11725 2.57265 2.57718 2.79953 2.81075 2.83382 2.89012 3.57802 3.92200 4.17846 4.28211 4.35535 4.39612 4.55657 4.60902 4.99694 5.15121 5.26234 5.36955 5.47511 5.57337 5.66703 5.76783 5.87331 5.96759 6.00009 6.15060 6.21102 6.57247 6.59905 6.78806 6.92168 7.09052 7.22155 7.30396 7.39653 7.50714 7.65151 7.84949 8.19685 8.28862 8.39292 8.52468 9.65820 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.003785 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.811564 B = 7396.084139 C = 8972.924608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.072 3.928 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.430 4.430 8 H 0.089 0.911 9 C 0.139 3.861 10 C -0.237 4.237 11 C 0.005 3.995 12 C -0.792 4.792 13 S 2.690 3.310 14 O -0.969 6.969 15 O -0.968 6.968 16 N -0.915 5.915 17 N -0.501 5.501 18 C 0.525 3.475 19 O -0.531 6.531 20 C -0.133 4.133 21 C -0.126 4.126 22 C -0.141 4.141 23 C -0.116 4.116 24 C -0.020 4.020 25 C -0.181 4.181 26 H 0.291 0.709 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.418 0.582 30 H 0.423 0.577 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 -2.469 12.181 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.152 4.152 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.457 4.457 8 H 0.107 0.893 9 C 0.135 3.865 10 C -0.258 4.258 11 C -0.016 4.016 12 C -0.889 4.889 13 S 2.788 3.212 14 O -0.959 6.959 15 O -0.957 6.957 16 N -0.762 5.762 17 N -0.253 5.253 18 C 0.310 3.690 19 O -0.406 6.406 20 C -0.156 4.156 21 C -0.164 4.164 22 C -0.179 4.179 23 C -0.154 4.154 24 C -0.040 4.040 25 C -0.201 4.201 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.124 0.876 29 H 0.254 0.746 30 H 0.264 0.736 31 H 0.139 0.861 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.123 0.877 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.515 -3.455 11.755 12.346 hybrid contribution 1.171 1.414 -0.314 1.863 sum 2.686 -2.041 11.442 11.929 Atomic orbital electron populations 1.69818 1.07966 1.30624 1.29824 1.26171 0.94906 1.02258 0.91818 0.86125 0.80746 0.79466 0.79633 1.19025 1.19501 1.17934 1.19991 0.98548 0.91198 1.35963 0.89300 1.17869 0.90061 0.92152 0.86376 1.21029 1.04324 0.92727 1.07682 1.20176 0.91627 0.97576 0.92182 1.28993 1.18964 1.14865 1.26097 1.01681 0.73725 0.74524 0.71238 1.93502 1.34917 1.84467 1.83027 1.93540 1.85457 1.62262 1.54485 1.55857 1.77339 1.26524 1.16520 1.44502 1.64335 1.13931 1.02547 1.20964 0.76413 0.88368 0.83277 1.90681 1.45708 1.19638 1.84548 1.22826 1.00746 1.00593 0.91439 1.22913 0.94707 1.03281 0.95496 1.22858 0.97256 1.01305 0.96452 1.22819 0.98809 1.01152 0.92626 1.20270 0.95895 0.91712 0.96142 1.21347 0.99658 0.96881 1.02235 0.89769 0.88048 0.87647 0.74564 0.73564 0.86072 0.89555 0.90145 0.89711 0.90949 0.90747 0.88676 0.87739 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.32 10.97 55.55 0.61 -16.71 16 2 C 0.07 1.56 5.14 -17.34 -0.09 1.47 16 3 Si 0.92 16.03 29.59 -169.99 -5.03 11.00 16 4 H -0.27 -4.64 7.11 56.52 0.40 -4.23 16 5 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 6 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 7 C -0.43 -9.94 9.05 -37.74 -0.34 -10.28 16 8 H 0.09 1.93 7.91 -52.49 -0.41 1.52 16 9 C 0.14 3.31 5.57 -106.83 -0.60 2.72 16 10 C -0.24 -5.28 9.80 -38.88 -0.38 -5.66 16 11 C 0.00 0.10 9.49 -39.66 -0.38 -0.28 16 12 C -0.79 -16.39 6.00 -39.29 -0.24 -16.62 16 13 S 2.69 51.61 5.92 -107.50 -0.64 50.97 16 14 O -0.97 -21.32 17.25 -57.17 -0.99 -22.30 16 15 O -0.97 -20.28 17.26 -57.17 -0.99 -21.27 16 16 N -0.92 -14.48 6.35 60.35 0.38 -14.10 16 17 N -0.50 -7.09 6.29 31.22 0.20 -6.89 16 18 C 0.52 7.45 7.47 -10.99 -0.08 7.37 16 19 O -0.53 -9.41 16.24 5.56 0.09 -9.32 16 20 C -0.13 -1.34 4.14 -90.96 -0.38 -1.72 16 21 C -0.13 -1.02 7.64 -25.83 -0.20 -1.22 16 22 C -0.14 -1.02 8.09 -25.83 -0.21 -1.23 16 23 C -0.12 -1.09 7.40 -25.92 -0.19 -1.28 16 24 C -0.02 -0.42 9.49 -39.66 -0.38 -0.80 16 25 C -0.18 -4.19 8.70 -38.87 -0.34 -4.53 16 26 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 27 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 28 H 0.11 2.01 7.60 -52.48 -0.40 1.61 16 29 H 0.42 5.89 8.96 -176.25 -1.58 4.31 16 30 H 0.42 5.11 8.83 -182.60 -1.61 3.50 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.03 7.45 -51.93 -0.39 0.64 16 38 H 0.10 2.07 7.59 -52.49 -0.40 1.67 16 39 H 0.12 2.88 6.18 -52.48 -0.32 2.55 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -31.36 348.85 -12.10 -43.46 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -7.21 Total: 11.98 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: -3.79 Total: -32.07 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 1.19 Total: -37.71 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -1.88 Total: -52.90 kcal Atomic # 14 Polarization: 16.03 SS G_CDS: -5.03 Total: 11.00 kcal Atomic # 16 Polarization: 51.61 SS G_CDS: -0.64 Total: 50.97 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.36 -12.10 -43.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319338536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.247 kcal (2) G-P(sol) polarization free energy of solvation -31.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds