Wall clock time and date at job start Tue Mar 31 2020 14:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86794 * 119.99920 * 2 1 4 4 H 1.48502 * 109.46946 * 274.65830 * 3 2 1 5 5 H 1.48500 * 109.47366 * 34.65685 * 3 2 1 6 6 H 1.48505 * 109.47273 * 154.66140 * 3 2 1 7 7 C 1.39945 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99412 * 162.23866 * 7 2 1 9 9 C 1.41396 * 120.00430 * 342.23374 * 7 2 1 10 10 C 1.40715 * 120.24371 * 155.29137 * 9 7 2 11 11 C 1.37612 * 119.74513 * 180.02562 * 10 9 7 12 12 C 1.38640 * 120.24957 * 0.02562 * 11 10 9 13 13 S 1.76192 * 119.75074 * 179.97438 * 12 11 10 14 14 O 1.42094 * 106.40575 * 203.54141 * 13 12 11 15 15 O 1.42103 * 106.40334 * 336.46317 * 13 12 11 16 16 N 1.65602 * 107.21783 * 90.00144 * 13 12 11 17 17 N 1.40102 * 119.99957 * 59.99996 * 16 13 12 18 18 C 1.34771 * 120.00175 * 125.00038 * 17 16 13 19 19 O 1.21281 * 120.00003 * 0.02562 * 18 17 16 20 20 C 1.50703 * 120.00238 * 179.97438 * 18 17 16 21 21 C 1.53776 * 113.61744 * 279.13854 * 20 18 17 22 22 C 1.53957 * 87.02010 * 220.04705 * 21 20 18 23 23 C 1.53775 * 113.61490 * 181.53048 * 20 18 17 24 24 C 1.38633 * 120.49743 * 0.25206 * 12 11 10 25 25 C 1.37617 * 120.24902 * 359.44727 * 24 12 11 26 26 H 0.96995 * 120.00034 * 0.02562 * 1 2 3 27 27 H 1.08004 * 120.12819 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.88000 * 179.97438 * 11 10 9 29 29 H 0.97006 * 120.00240 * 240.00330 * 16 13 12 30 30 H 0.97000 * 119.99802 * 304.99840 * 17 16 13 31 31 H 1.09003 * 112.84287 * 50.33763 * 20 18 17 32 32 H 1.08999 * 113.61591 * 334.57124 * 21 20 18 33 33 H 1.09004 * 113.61425 * 105.46832 * 21 20 18 34 34 H 1.09000 * 113.53266 * 270.81042 * 22 21 20 35 35 H 1.08999 * 113.66043 * 139.93394 * 22 21 20 36 36 H 1.09002 * 113.61523 * 254.53452 * 23 20 18 37 37 H 1.09000 * 113.61554 * 25.35176 * 23 20 18 38 38 H 1.07996 * 119.87251 * 179.70151 * 24 12 11 39 39 H 1.08007 * 120.13030 * 180.27330 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3912 2.1032 -1.3955 5 1 1.4924 2.6222 0.7962 6 1 3.5856 1.4137 0.5992 7 6 2.0079 -1.2120 0.0005 8 1 3.0493 -1.2344 -0.2848 9 6 1.3515 -2.4072 0.3747 10 6 1.8217 -3.6494 -0.0899 11 6 1.1747 -4.8061 0.2803 12 6 0.0633 -4.7508 1.1072 13 16 -0.7555 -6.2399 1.5723 14 8 -2.0867 -5.8769 1.9116 15 8 -0.4426 -7.1993 0.5718 16 7 -0.0456 -6.7736 2.9701 17 7 -0.0608 -5.9672 4.1156 18 6 -0.5598 -6.4479 5.2716 19 8 -0.9953 -7.5787 5.3203 20 6 -0.5756 -5.5806 6.5039 21 6 0.7737 -5.5314 7.2400 22 6 -0.0308 -5.5913 8.5514 23 6 -1.1416 -6.2870 7.7471 24 6 -0.4121 -3.5321 1.5661 25 6 0.2228 -2.3631 1.2138 26 1 -0.4850 0.8400 -0.0004 27 1 2.6867 -3.6947 -0.7351 28 1 1.5335 -5.7607 -0.0754 29 1 0.3808 -7.6446 2.9957 30 1 0.2879 -5.0628 4.0767 31 1 -1.0110 -4.5976 6.3241 32 1 1.3964 -6.4095 7.0693 33 1 1.3135 -4.5948 7.1002 34 1 -0.3161 -4.6106 8.9321 35 1 0.4207 -6.2273 9.3128 36 1 -2.1459 -5.9595 8.0160 37 1 -1.0447 -7.3722 7.7146 38 1 -1.2816 -3.5003 2.2059 39 1 -0.1466 -1.4150 1.5761 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319338536.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:31 Heat of formation + Delta-G solvation = -76.181964 kcal Electronic energy + Delta-G solvation = -24908.465792 eV Core-core repulsion = 21136.135815 eV Total energy + Delta-G solvation = -3772.329977 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.29539 -39.40727 -38.61452 -38.26017 -36.95470 -36.66040 -35.82463 -32.09993 -31.63403 -31.30331 -27.65454 -27.30490 -26.48226 -23.37737 -22.97755 -22.48283 -21.09478 -20.19720 -19.44180 -19.19652 -18.88571 -18.55043 -17.90364 -17.21609 -16.48614 -16.40228 -15.94203 -15.83526 -15.40987 -15.22918 -14.97487 -14.14658 -14.00083 -13.90702 -13.65647 -13.57269 -13.36208 -13.25785 -13.16150 -12.99883 -12.94205 -12.88469 -12.57034 -12.35342 -12.16317 -11.98730 -11.54726 -11.39967 -11.30634 -11.26294 -11.19948 -10.88604 -10.10113 -9.82363 -9.56678 -8.88610 -6.66346 -0.68976 0.43706 1.05935 1.28087 1.39053 1.45300 1.46869 1.55352 2.12570 2.40335 2.73858 2.78011 3.47404 3.51664 3.56306 3.66340 3.78005 3.94853 4.20656 4.31098 4.33227 4.73088 4.84171 4.88006 4.88675 4.92716 4.94577 5.08909 5.09182 5.14766 5.20280 5.21814 5.51644 5.55003 5.58286 5.74729 5.90741 5.94521 6.14386 6.26430 6.47900 6.67333 6.79426 7.14622 8.06116 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012537 B = 0.003785 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.811564 B = 7396.084139 C = 8972.924608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.263 1.263 5 H -0.263 1.263 6 H -0.252 1.252 7 C -0.458 4.458 8 H 0.094 0.906 9 C 0.113 3.887 10 C -0.253 4.253 11 C 0.001 3.999 12 C -0.794 4.794 13 S 2.722 3.278 14 O -0.996 6.996 15 O -0.985 6.985 16 N -0.911 5.911 17 N -0.498 5.498 18 C 0.521 3.479 19 O -0.571 6.571 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.123 4.123 24 C -0.018 4.018 25 C -0.200 4.200 26 H 0.300 0.700 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.428 0.572 30 H 0.433 0.567 31 H 0.142 0.858 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 -1.470 13.413 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.187 1.187 6 H -0.175 1.175 7 C -0.485 4.485 8 H 0.112 0.888 9 C 0.110 3.890 10 C -0.274 4.274 11 C -0.019 4.019 12 C -0.890 4.890 13 S 2.819 3.181 14 O -0.986 6.986 15 O -0.974 6.974 16 N -0.761 5.761 17 N -0.252 5.252 18 C 0.308 3.692 19 O -0.448 6.448 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.039 4.039 25 C -0.220 4.220 26 H 0.111 0.889 27 H 0.130 0.870 28 H 0.143 0.857 29 H 0.267 0.733 30 H 0.277 0.723 31 H 0.160 0.840 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.345 -2.448 12.975 13.411 hybrid contribution 0.868 0.979 -0.664 1.467 sum 3.213 -1.469 12.311 12.808 Atomic orbital electron populations 1.69849 1.09427 1.32049 1.30300 1.27008 0.95500 1.05208 0.90670 0.85045 0.79363 0.74966 0.79641 1.18737 1.18686 1.17524 1.20289 0.99035 0.92043 1.37111 0.88802 1.18211 0.90684 0.93148 0.86997 1.21243 1.05107 0.92776 1.08241 1.20445 0.91496 0.98137 0.91819 1.29229 1.18573 1.15404 1.25814 1.00651 0.72805 0.73472 0.71167 1.93470 1.36706 1.84815 1.83615 1.93511 1.85560 1.62418 1.55903 1.55325 1.77020 1.27086 1.16664 1.44759 1.64427 1.14260 1.01738 1.21848 0.75070 0.88344 0.83949 1.90663 1.47404 1.21522 1.85173 1.23086 1.02718 1.00674 0.89355 1.22942 0.93769 1.03900 0.95349 1.22838 0.95624 1.02012 0.96014 1.22859 1.00114 1.00192 0.92988 1.20430 0.95971 0.91528 0.95941 1.21356 1.00391 0.97123 1.03150 0.88901 0.86991 0.85677 0.73261 0.72346 0.83993 0.90273 0.88377 0.87906 0.90125 0.90096 0.90644 0.86397 0.86771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.36 10.97 21.83 0.24 -36.12 16 2 C 0.04 1.57 5.14 85.26 0.44 2.01 16 3 Si 0.99 32.14 29.59 68.60 2.03 34.17 16 4 H -0.26 -8.36 7.11 99.48 0.71 -7.66 16 5 H -0.26 -8.12 7.11 99.48 0.71 -7.41 16 6 H -0.25 -7.94 7.11 99.48 0.71 -7.23 16 7 C -0.46 -21.34 9.05 23.46 0.21 -21.12 16 8 H 0.09 4.10 7.91 -2.91 -0.02 4.08 16 9 C 0.11 5.45 5.57 -21.29 -0.12 5.33 16 10 C -0.25 -11.29 9.80 22.73 0.22 -11.07 16 11 C 0.00 0.04 9.49 22.22 0.21 0.25 16 12 C -0.79 -32.40 6.00 22.46 0.13 -32.26 16 13 S 2.72 102.24 5.92 -56.49 -0.33 101.90 16 14 O -1.00 -43.17 17.25 -128.00 -2.21 -45.38 16 15 O -0.98 -40.31 17.26 -128.00 -2.21 -42.52 16 16 N -0.91 -27.96 6.35 37.02 0.24 -27.72 16 17 N -0.50 -13.53 6.29 -173.54 -1.09 -14.63 16 18 C 0.52 14.32 7.47 87.66 0.65 14.98 16 19 O -0.57 -20.15 16.24 -3.03 -0.05 -20.19 16 20 C -0.14 -2.49 4.14 -11.02 -0.05 -2.54 16 21 C -0.12 -1.68 7.64 31.18 0.24 -1.45 16 22 C -0.13 -1.50 8.09 31.18 0.25 -1.25 16 23 C -0.12 -2.14 7.40 31.12 0.23 -1.91 16 24 C -0.02 -0.79 9.49 22.22 0.21 -0.58 16 25 C -0.20 -9.37 8.70 22.73 0.20 -9.17 16 26 H 0.30 12.19 8.30 -92.71 -0.77 11.42 16 27 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 28 H 0.13 4.61 7.60 -2.91 -0.02 4.59 16 29 H 0.43 11.68 8.96 -217.34 -1.95 9.73 16 30 H 0.43 9.87 8.83 -213.32 -1.88 7.98 16 31 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 33 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.62 7.45 -2.39 -0.02 1.60 16 38 H 0.12 4.61 7.59 -2.91 -0.02 4.59 16 39 H 0.11 5.47 6.18 -2.91 -0.02 5.45 16 Total: -1.00 -67.10 348.85 -3.27 -70.37 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -2.72 Total: 38.90 kcal Atomic # 6 Polarization: -61.62 SS G_CDS: 2.84 Total: -58.78 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -0.62 Total: -78.46 kcal Atomic # 8 Polarization: -103.63 SS G_CDS: -4.47 Total: -108.09 kcal Atomic # 14 Polarization: 32.14 SS G_CDS: 2.03 Total: 34.17 kcal Atomic # 16 Polarization: 102.24 SS G_CDS: -0.33 Total: 101.90 kcal Total: -67.10 -3.27 -70.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319338536.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.814 kcal (2) G-P(sol) polarization free energy of solvation -67.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds