Wall clock time and date at job start Tue Mar 31 2020 14:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99842 * 2 1 4 4 H 1.48490 * 109.47496 * 270.00053 * 3 2 1 5 5 H 1.48498 * 109.47289 * 30.00554 * 3 2 1 6 6 H 1.48508 * 109.46975 * 149.99918 * 3 2 1 7 7 C 1.37880 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99549 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00118 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46895 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46961 * 179.97438 * 10 9 7 12 12 S 1.65600 * 119.99770 * 164.99840 * 11 10 9 13 13 O 1.42094 * 106.40341 * 311.45908 * 12 11 10 14 14 O 1.42100 * 106.39674 * 178.54120 * 12 11 10 15 15 C 1.76202 * 107.21716 * 65.00411 * 12 11 10 16 16 C 1.38304 * 119.92493 * 270.21402 * 15 12 11 17 17 C 1.38110 * 120.09254 * 180.24585 * 16 15 12 18 18 C 1.38863 * 119.88682 * 359.78979 * 17 16 15 19 19 C 1.38845 * 119.87458 * 359.97112 * 18 17 16 20 20 C 1.38097 * 119.97092 * 0.02562 * 19 18 17 21 21 C 1.50655 * 119.84777 * 180.02562 * 19 18 17 22 22 C 1.52906 * 109.52587 * 326.05151 * 21 19 18 23 23 C 1.50493 * 109.90882 * 48.56101 * 22 21 19 24 24 O 1.21288 * 119.60950 * 144.82188 * 23 22 21 25 25 N 1.34561 * 120.77252 * 324.85442 * 23 22 21 26 26 H 0.96996 * 120.00096 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47049 * 60.00212 * 9 7 2 28 28 H 1.08997 * 109.46782 * 299.99685 * 9 7 2 29 29 H 1.08999 * 109.47075 * 59.99840 * 10 9 7 30 30 H 1.08998 * 109.46968 * 300.00251 * 10 9 7 31 31 H 0.97005 * 119.99709 * 344.99951 * 11 10 9 32 32 H 1.07999 * 119.95366 * 0.03364 * 16 15 12 33 33 H 1.07997 * 120.05432 * 179.80861 * 17 16 15 34 34 H 1.08002 * 119.98303 * 179.97438 * 20 19 18 35 35 H 1.09008 * 109.45851 * 86.06620 * 21 19 18 36 36 H 1.09002 * 109.46228 * 206.02791 * 21 19 18 37 37 H 1.08995 * 109.39890 * 168.70574 * 22 21 19 38 38 H 1.09007 * 109.39268 * 288.52197 * 22 21 19 39 39 H 0.97001 * 119.77020 * 180.79078 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.3999 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4866 -2.6365 -0.0022 12 16 6.3149 -4.0216 0.3689 13 8 5.7349 -4.5283 1.5630 14 8 7.6955 -3.7080 0.2477 15 6 5.9587 -5.1967 -0.8949 16 6 4.8763 -6.0471 -0.7610 17 6 4.5970 -6.9729 -1.7471 18 6 5.4023 -7.0458 -2.8759 19 6 6.4853 -6.1872 -3.0095 20 6 6.7595 -5.2636 -2.0202 21 6 7.3583 -6.2664 -4.2347 22 6 7.4483 -7.7185 -4.7051 23 6 6.0712 -8.3216 -4.7728 24 8 5.8103 -9.1236 -5.6444 25 7 5.1257 -7.9809 -3.8779 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6800 -0.8911 29 1 3.6579 -3.1505 -0.8907 30 1 3.6585 -3.1501 0.8892 31 1 5.9714 -1.8251 -0.2203 32 1 4.2506 -5.9895 0.1174 33 1 3.7534 -7.6388 -1.6405 34 1 7.6021 -4.5959 -2.1237 35 1 6.9283 -5.6539 -5.0273 36 1 8.3563 -5.9001 -3.9939 37 1 7.9069 -7.7512 -5.6934 38 1 8.0578 -8.2890 -4.0041 39 1 4.2463 -8.3872 -3.9281 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320039100.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:08 Heat of formation + Delta-G solvation = -96.588140 kcal Electronic energy + Delta-G solvation = -24683.100964 eV Core-core repulsion = 20909.886109 eV Total energy + Delta-G solvation = -3773.214855 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41529 -39.10462 -37.14760 -35.85090 -35.67910 -35.56859 -34.45865 -32.73275 -30.60619 -30.07936 -29.74025 -25.14488 -24.60846 -23.70446 -23.25162 -20.96692 -20.16649 -19.10916 -18.45944 -17.75669 -17.49251 -17.01655 -16.83177 -16.37655 -15.72454 -15.37552 -14.94154 -14.55963 -14.29046 -14.25674 -14.14836 -14.04595 -13.76433 -13.66281 -12.98593 -12.67897 -12.57855 -12.18633 -12.07779 -12.00158 -11.90685 -11.67325 -11.58592 -11.38441 -11.25016 -10.92532 -10.52762 -10.49541 -10.10383 -9.92465 -9.38393 -9.27912 -9.07853 -8.71468 -8.64085 -6.14724 -4.14989 0.30835 0.61364 0.91511 1.99045 2.50924 3.01944 3.23994 3.32543 3.33029 3.34604 3.82544 3.87092 4.10069 4.18520 4.35858 4.44272 4.50175 4.65868 4.77927 4.90418 5.06087 5.19205 5.23398 5.30428 5.41741 5.54080 5.57671 5.63559 5.67094 5.81442 6.00715 6.16649 6.21442 6.36044 6.46132 6.64802 7.07855 7.17384 7.24976 7.46722 7.64913 8.38484 8.87978 9.46017 10.98105 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.003254 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.563322 B = 8603.993084 C = 9496.769394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.076 0.924 9 C -0.018 4.018 10 C 0.126 3.874 11 N -1.114 6.114 12 S 2.696 3.304 13 O -0.957 6.957 14 O -0.970 6.970 15 C -0.694 4.694 16 C 0.016 3.984 17 C -0.170 4.170 18 C 0.211 3.789 19 C -0.149 4.149 20 C 0.018 3.982 21 C -0.078 4.078 22 C -0.139 4.139 23 C 0.523 3.477 24 O -0.524 6.524 25 N -0.664 5.664 26 H 0.265 0.735 27 H 0.026 0.974 28 H 0.019 0.981 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.416 0.584 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.323 -13.561 -6.943 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.564 4.564 8 H 0.094 0.906 9 C -0.057 4.057 10 C 0.001 3.999 11 N -0.876 5.876 12 S 2.784 3.216 13 O -0.947 6.947 14 O -0.960 6.960 15 C -0.780 4.780 16 C -0.004 4.004 17 C -0.192 4.192 18 C 0.113 3.887 19 C -0.153 4.153 20 C -0.001 4.001 21 C -0.115 4.115 22 C -0.179 4.179 23 C 0.312 3.688 24 O -0.399 6.399 25 N -0.308 5.308 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.168 0.832 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 15.637 -14.198 -6.749 22.174 hybrid contribution -0.405 0.826 -0.769 1.199 sum 15.233 -13.372 -7.519 21.619 Atomic orbital electron populations 1.69892 1.06304 1.27117 1.50355 1.24991 0.94748 0.99195 0.94300 0.86780 0.80436 0.83549 0.78526 1.20256 1.21280 1.18876 1.20943 0.88727 0.94844 1.51883 0.90616 1.19757 0.97637 0.91027 0.97260 1.21472 0.75068 1.02152 1.01201 1.55540 1.17558 1.26245 1.88231 1.01763 0.72770 0.73030 0.73995 1.93588 1.78667 1.80056 1.42379 1.93558 1.31418 1.83901 1.87124 1.31045 1.07587 1.20732 1.18680 1.20846 0.92411 0.89823 0.97333 1.20909 1.02165 1.02769 0.93339 1.17875 0.94379 0.88380 0.88044 1.19553 0.98389 0.98637 0.98708 1.20594 0.95919 0.94194 0.89437 1.20453 1.00464 0.95590 0.94972 1.21734 0.93459 0.97022 1.05677 1.20870 0.87378 0.80861 0.79732 1.90798 1.81378 1.33737 1.33944 1.43784 1.16439 1.41532 1.29027 0.92534 0.95560 0.96257 0.92316 0.90618 0.74960 0.83223 0.84251 0.83535 0.89471 0.88454 0.86945 0.87578 0.74680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 7 C -0.53 -13.97 9.66 -34.44 -0.33 -14.30 16 8 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.02 -0.38 4.18 -27.88 -0.12 -0.50 16 10 C 0.13 2.19 6.16 -4.04 -0.02 2.17 16 11 N -1.11 -15.94 6.00 -10.61 -0.06 -16.00 16 12 S 2.70 36.94 5.73 -107.50 -0.62 36.32 16 13 O -0.96 -15.84 16.75 -57.17 -0.96 -16.80 16 14 O -0.97 -14.52 17.28 -57.17 -0.99 -15.51 16 15 C -0.69 -8.10 5.95 -39.54 -0.24 -8.34 16 16 C 0.02 0.17 9.51 -39.60 -0.38 -0.20 16 17 C -0.17 -1.60 9.93 -39.40 -0.39 -1.99 16 18 C 0.21 1.97 6.50 -83.76 -0.54 1.42 16 19 C -0.15 -1.36 5.66 -104.47 -0.59 -1.95 16 20 C 0.02 0.19 9.16 -39.62 -0.36 -0.18 16 21 C -0.08 -0.50 6.00 -27.95 -0.17 -0.66 16 22 C -0.14 -0.89 6.08 -28.03 -0.17 -1.06 16 23 C 0.52 4.98 7.72 -11.18 -0.09 4.89 16 24 O -0.52 -6.80 17.91 5.55 0.10 -6.70 16 25 N -0.66 -5.68 5.36 -10.01 -0.05 -5.74 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.57 7.20 -51.93 -0.37 0.20 16 28 H 0.02 0.40 7.57 -51.93 -0.39 0.01 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.35 7.75 -51.93 -0.40 0.94 16 31 H 0.42 5.27 8.65 -34.48 -0.30 4.97 16 32 H 0.15 1.55 7.62 -52.49 -0.40 1.15 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.15 1.23 7.61 -52.49 -0.40 0.84 16 35 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.10 0.44 8.06 -51.93 -0.42 0.02 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.56 8.14 -51.92 -0.42 0.14 16 39 H 0.41 2.97 8.83 -40.82 -0.36 2.60 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -35.29 343.41 -9.54 -44.83 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.75 Total: 3.13 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -3.50 Total: -18.87 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.66 Total: -47.53 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -1.85 Total: -39.00 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Atomic # 16 Polarization: 36.94 SS G_CDS: -0.62 Total: 36.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.29 -9.54 -44.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320039100.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.753 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds