Wall clock time and date at job start Tue Mar 31 2020 14:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21553 * 119.99965 * 0.02562 * 11 10 9 13 13 C 1.47846 * 120.00003 * 180.02562 * 11 10 9 14 14 C 1.39477 * 120.18791 * 179.72378 * 13 11 10 15 15 C 1.38197 * 120.09867 * 179.74867 * 14 13 11 16 16 C 1.38413 * 119.99807 * 0.53187 * 15 14 13 17 17 C 1.38629 * 120.07882 * 359.74318 * 16 15 14 18 18 S 1.76200 * 119.79339 * 180.02562 * 17 16 15 19 19 N 1.65598 * 107.21977 * 294.97564 * 18 17 16 20 20 O 1.42103 * 106.40415 * 48.51860 * 18 17 16 21 21 O 1.42100 * 106.40169 * 181.43656 * 18 17 16 22 22 C 1.37842 * 120.40825 * 359.97438 * 17 16 15 23 23 C 1.51421 * 109.69580 * 179.74190 * 16 15 14 24 24 C 1.54332 * 105.18448 * 342.77446 * 23 16 15 25 25 C 1.51397 * 130.26132 * 180.21581 * 15 14 13 26 26 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.94823 * 0.02562 * 14 13 11 31 31 H 0.97002 * 120.00164 * 0.02562 * 19 18 17 32 32 H 0.96998 * 120.00317 * 179.97438 * 19 18 17 33 33 H 1.08005 * 120.10638 * 180.02562 * 22 17 16 34 34 H 1.09004 * 110.30004 * 101.70183 * 23 16 15 35 35 H 1.09004 * 110.30063 * 223.84560 * 23 16 15 36 36 H 1.08998 * 110.81664 * 268.19321 * 24 23 16 37 37 H 1.09004 * 110.98214 * 144.73509 * 24 23 16 38 38 H 1.08995 * 110.30271 * 316.44037 * 25 15 14 39 39 H 1.08997 * 110.29967 * 78.49816 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5585 -5.1054 0.0011 13 6 2.7143 -6.0072 0.0016 14 6 2.2536 -7.3237 0.0080 15 6 3.1532 -8.3727 0.0033 16 6 4.5137 -8.1177 0.0033 17 6 4.9756 -6.8106 0.0028 18 16 6.7090 -6.4947 0.0022 19 7 7.3115 -7.0633 1.4361 20 8 7.2655 -7.3113 -1.0189 21 8 6.8594 -5.0820 0.0359 22 6 4.0872 -5.7567 0.0016 23 6 5.2779 -9.4249 0.0041 24 6 4.2537 -10.4917 0.4456 25 6 2.9132 -9.8675 0.0039 26 1 -0.4850 0.8401 0.0004 27 1 0.6239 -2.5567 0.8903 28 1 0.6246 -2.5571 -0.8897 29 1 3.1566 -3.4355 0.0009 30 1 1.1923 -7.5235 0.0121 31 1 6.7175 -7.4773 2.0816 32 1 8.2584 -6.9831 1.6302 33 1 4.4524 -4.7403 0.0007 34 1 5.6479 -9.6473 -0.9968 35 1 6.1052 -9.3789 0.7124 36 1 4.2794 -10.6294 1.5265 37 1 4.4288 -11.4370 -0.0681 38 1 2.1253 -10.1237 0.7121 39 1 2.6471 -10.2082 -0.9966 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321088224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:20 Heat of formation + Delta-G solvation = -94.990876 kcal Electronic energy + Delta-G solvation = -24905.128803 eV Core-core repulsion = 21131.983210 eV Total energy + Delta-G solvation = -3773.145593 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64911 -38.77870 -37.31026 -36.01063 -35.72022 -34.35754 -33.51732 -32.40556 -32.05052 -29.74924 -27.91096 -27.12300 -23.89775 -23.04472 -21.92055 -21.54242 -19.72358 -19.60526 -18.35939 -17.70716 -17.16536 -16.52284 -16.23427 -15.89759 -15.53607 -15.45760 -15.37903 -14.82252 -14.52370 -14.32672 -13.67063 -13.29219 -13.08844 -12.96932 -12.42118 -12.36823 -12.23053 -12.17015 -12.13453 -12.06086 -11.93584 -11.85939 -11.61127 -11.25931 -10.99220 -10.88461 -10.80018 -10.76354 -10.32324 -9.52592 -9.42864 -9.33360 -8.88748 -8.75621 -7.97480 -6.17538 -4.24578 0.15490 0.49366 0.80503 2.69934 2.95157 3.26369 3.32348 3.35563 3.39601 3.75531 3.86881 3.98693 4.04866 4.34319 4.42644 4.57032 4.65283 4.83620 4.99481 5.04265 5.10008 5.19077 5.28735 5.33459 5.38707 5.50684 5.58286 5.66204 5.68321 5.74394 5.78719 6.06762 6.13546 6.48693 6.70115 7.23635 7.29993 7.46109 7.63374 7.93432 8.50278 8.71255 8.94902 9.41870 10.92629 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.003560 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.690973 B = 7863.138458 C = 9504.335809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.248 3.752 10 N -0.702 5.702 11 C 0.540 3.460 12 O -0.548 6.548 13 C -0.135 4.135 14 C 0.005 3.995 15 C -0.125 4.125 16 C 0.007 3.993 17 C -0.666 4.666 18 S 2.700 3.300 19 N -1.250 6.250 20 O -0.960 6.960 21 O -0.958 6.958 22 C 0.010 3.990 23 C -0.104 4.104 24 C -0.118 4.118 25 C -0.081 4.081 26 H 0.266 0.734 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.392 0.608 30 H 0.144 0.856 31 H 0.416 0.584 32 H 0.420 0.580 33 H 0.153 0.847 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.698 -22.296 3.535 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.128 3.872 10 N -0.350 5.350 11 C 0.324 3.676 12 O -0.429 6.429 13 C -0.139 4.139 14 C -0.014 4.014 15 C -0.126 4.126 16 C 0.006 3.994 17 C -0.754 4.754 18 S 2.789 3.211 19 N -0.925 5.925 20 O -0.949 6.949 21 O -0.947 6.947 22 C -0.010 4.010 23 C -0.141 4.141 24 C -0.155 4.155 25 C -0.118 4.118 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.226 0.774 30 H 0.162 0.838 31 H 0.243 0.757 32 H 0.251 0.749 33 H 0.171 0.829 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.081 -21.772 2.675 25.540 hybrid contribution 0.252 0.797 0.605 1.032 sum 13.333 -20.976 3.280 25.070 Atomic orbital electron populations 1.69973 1.06131 1.27383 1.48827 1.24941 0.94922 0.99500 0.94552 0.86392 0.79688 0.82431 0.78317 1.20392 1.21010 1.19580 1.21234 0.93441 0.90302 1.53415 0.91649 1.19209 0.88194 0.81700 0.98068 1.46499 1.11567 1.05909 1.71000 1.18067 0.87794 0.83187 0.78503 1.90743 1.15875 1.84799 1.51451 1.20307 0.93546 0.94789 1.05287 1.21074 1.00805 0.90168 0.89375 1.20630 0.93256 0.95946 1.02729 1.20414 0.95929 0.92302 0.90779 1.29809 1.24902 0.98573 1.22113 1.01635 0.73003 0.73751 0.72749 1.53063 1.19905 1.80727 1.38819 1.93609 1.76423 1.69647 1.55240 1.93631 1.85050 1.30189 1.85867 1.21149 0.92163 0.98688 0.89036 1.21476 0.98095 0.90313 1.04213 1.22308 0.93423 0.97959 1.01852 1.21073 0.98562 0.89362 1.02812 0.92412 0.95111 0.95134 0.77359 0.83831 0.75695 0.74941 0.82928 0.87682 0.89838 0.90475 0.89796 0.90016 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.55 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.07 1.69 7.60 -52.49 -0.40 1.29 16 9 C 0.25 6.63 5.43 -5.19 -0.03 6.60 16 10 N -0.70 -15.25 5.50 -62.43 -0.34 -15.59 16 11 C 0.54 11.14 7.77 -12.33 -0.10 11.04 16 12 O -0.55 -13.13 16.35 5.32 0.09 -13.04 16 13 C -0.14 -2.17 5.87 -105.01 -0.62 -2.79 16 14 C 0.00 0.07 9.59 -39.13 -0.38 -0.31 16 15 C -0.12 -1.37 6.12 -104.23 -0.64 -2.01 16 16 C 0.01 0.08 5.97 -104.06 -0.62 -0.54 16 17 C -0.67 -7.91 5.87 -39.58 -0.23 -8.15 16 18 S 2.70 29.14 5.97 -107.50 -0.64 28.50 16 19 N -1.25 -7.61 9.38 60.35 0.57 -7.05 16 20 O -0.96 -12.39 17.40 -57.17 -0.99 -13.38 16 21 O -0.96 -13.80 16.95 -57.17 -0.97 -14.76 16 22 C 0.01 0.14 9.03 -39.24 -0.35 -0.22 16 23 C -0.10 -0.77 5.86 -26.83 -0.16 -0.93 16 24 C -0.12 -0.67 7.08 -25.34 -0.18 -0.85 16 25 C -0.08 -0.60 6.77 -26.85 -0.18 -0.79 16 26 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.39 7.48 6.36 -40.82 -0.26 7.22 16 30 H 0.14 1.93 7.64 -52.49 -0.40 1.53 16 31 H 0.42 1.63 8.92 -34.47 -0.31 1.33 16 32 H 0.42 1.73 8.96 -34.47 -0.31 1.43 16 33 H 0.15 2.12 5.67 -52.48 -0.30 1.82 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.45 7.97 -51.93 -0.41 0.04 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 344.21 15.07 5.19 5.19 Total: -1.00 -37.02 344.21 -9.77 -46.79 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.48 Total: 5.15 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -3.90 Total: -12.52 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.96 Total: -48.01 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -1.88 Total: -41.19 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 29.14 SS G_CDS: -0.64 Total: 28.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.02 -9.77 -46.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321088224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.201 kcal (2) G-P(sol) polarization free energy of solvation -37.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds