Wall clock time and date at job start Tue Mar 31 2020 14:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00207 * 2 1 4 4 H 1.48507 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47186 * 299.99825 * 3 2 1 6 6 H 1.48505 * 109.47198 * 59.99651 * 3 2 1 7 7 C 1.37880 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00530 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99780 * 0.02562 * 7 2 1 10 10 O 1.42894 * 113.28009 * 46.93345 * 9 7 2 11 11 C 1.53499 * 114.20356 * 180.02562 * 9 7 2 12 12 N 1.47062 * 87.98475 * 139.85430 * 11 9 7 13 13 C 1.34775 * 136.06081 * 152.84264 * 12 11 9 14 14 O 1.21282 * 120.00011 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00009 * 180.27285 * 13 12 11 16 16 C 1.50703 * 109.47030 * 179.72529 * 15 13 12 17 17 C 1.38260 * 119.97560 * 259.21623 * 16 15 13 18 18 C 1.38177 * 120.02840 * 179.97438 * 17 16 15 19 19 C 1.38481 * 119.97443 * 0.02562 * 18 17 16 20 20 F 1.35101 * 120.02712 * 179.97438 * 19 18 17 21 21 C 1.38440 * 119.94585 * 0.02562 * 19 18 17 22 22 C 1.38219 * 119.97369 * 359.70389 * 21 19 18 23 23 N 1.48007 * 119.98637 * 180.29146 * 22 21 19 24 24 O 1.21798 * 119.99983 * 354.14676 * 23 22 21 25 25 O 1.21799 * 119.99986 * 174.13842 * 23 22 21 26 26 C 1.47072 * 87.88538 * 333.09729 * 12 11 9 27 27 H 0.96997 * 119.99715 * 0.02562 * 1 2 3 28 28 H 0.96702 * 113.99957 * 313.06612 * 10 9 7 29 29 H 1.08998 * 113.47111 * 25.06947 * 11 9 7 30 30 H 1.09005 * 113.46233 * 254.62930 * 11 9 7 31 31 H 1.09005 * 109.47177 * 299.72203 * 15 13 12 32 32 H 1.08991 * 109.47275 * 59.72836 * 15 13 12 33 33 H 1.07998 * 119.98998 * 359.97438 * 17 16 15 34 34 H 1.07999 * 120.01338 * 180.02562 * 18 17 16 35 35 H 1.08010 * 120.01226 * 180.02562 * 21 19 18 36 36 H 1.08998 * 113.46556 * 141.68245 * 26 12 11 37 37 H 1.09001 * 113.46969 * 272.12329 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.1928 -2.5403 -0.9588 11 6 2.1488 -3.7443 0.0018 12 7 1.2065 -4.3590 0.9489 13 6 0.8300 -5.6133 1.2671 14 8 1.3255 -6.5594 0.6923 15 6 -0.2117 -5.8401 2.3322 16 6 -0.4551 -7.3189 2.4900 17 6 -1.5641 -7.9026 1.9060 18 6 -1.7881 -9.2585 2.0495 19 6 -0.9016 -10.0328 2.7792 20 9 -1.1199 -11.3585 2.9206 21 6 0.2078 -9.4470 3.3644 22 6 0.4328 -8.0915 3.2148 23 7 1.6223 -7.4661 3.8349 24 8 2.3445 -8.1218 4.5643 25 8 1.8791 -6.2959 3.6157 26 6 0.8512 -3.0023 1.3917 27 1 -0.4849 0.8400 -0.0004 28 1 -0.3709 -1.7545 -0.9566 29 1 3.1369 -3.5665 0.4261 30 1 2.1884 -4.2517 -0.9621 31 1 0.1395 -5.4268 3.2778 32 1 -1.1401 -5.3479 2.0430 33 1 -2.2555 -7.2986 1.3373 34 1 -2.6542 -9.7143 1.5928 35 1 0.9002 -10.0500 3.9334 36 1 -0.2102 -2.8802 1.6073 37 1 1.4902 -2.6248 2.1900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326514629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:21 Heat of formation + Delta-G solvation = -57.296645 kcal Electronic energy + Delta-G solvation = -27384.940804 eV Core-core repulsion = 23047.216580 eV Total energy + Delta-G solvation = -4337.724224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.46643 -42.33503 -40.00983 -39.26412 -37.46160 -36.58083 -34.03395 -32.97611 -32.35443 -32.21160 -29.42350 -27.74006 -26.41799 -25.17885 -25.00099 -23.24141 -22.45324 -20.30376 -19.50795 -18.77568 -18.33634 -17.69716 -17.40083 -17.06905 -16.84331 -16.37047 -16.18614 -16.08344 -15.30412 -15.03027 -14.86273 -14.40460 -14.16897 -13.96911 -13.31936 -13.08515 -12.83944 -12.55527 -12.43419 -12.16468 -12.13538 -11.86627 -11.58040 -11.46826 -11.13304 -11.09392 -11.00344 -10.76513 -10.48865 -10.27347 -10.02312 -9.77014 -9.37940 -9.15529 -8.79688 -8.42337 -7.87534 -6.42817 -4.52299 -0.38133 0.41829 1.12879 1.27754 2.75512 3.12912 3.13960 3.22753 3.26946 3.49751 3.58257 3.96777 4.08710 4.17717 4.23835 4.41778 4.71079 4.79482 4.96343 5.07444 5.19733 5.24481 5.41301 5.51346 5.58780 5.69620 5.91372 5.94500 6.19851 6.34812 6.37837 6.52744 6.59891 6.66428 7.09759 7.60832 7.61346 7.78917 8.46895 8.52428 8.68154 9.19156 9.45301 10.64065 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.003049 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.175118 B = 9182.570215 C = 9769.271244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.074 0.926 9 C 0.239 3.761 10 O -0.573 6.573 11 C 0.109 3.891 12 N -0.627 5.627 13 C 0.557 3.443 14 O -0.570 6.570 15 C -0.116 4.116 16 C 0.004 3.996 17 C -0.081 4.081 18 C -0.099 4.099 19 C 0.098 3.902 20 F -0.125 7.125 21 C -0.093 4.093 22 C -0.002 4.002 23 N 0.032 4.968 24 O -0.163 6.163 25 O -0.140 6.140 26 C 0.072 3.928 27 H 0.273 0.727 28 H 0.394 0.606 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.110 0.890 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.064 0.936 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 -13.258 6.850 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.569 4.569 8 H 0.092 0.908 9 C 0.197 3.803 10 O -0.386 6.386 11 C -0.013 4.013 12 N -0.359 5.359 13 C 0.346 3.654 14 O -0.451 6.451 15 C -0.155 4.155 16 C 0.002 3.998 17 C -0.099 4.099 18 C -0.118 4.118 19 C 0.078 3.922 20 F -0.103 7.103 21 C -0.113 4.113 22 C -0.085 4.085 23 N 0.552 4.448 24 O -0.377 6.377 25 O -0.357 6.357 26 C -0.051 4.051 27 H 0.083 0.917 28 H 0.250 0.750 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.177 0.823 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.082 0.918 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.624 -14.767 6.188 17.327 hybrid contribution 0.396 1.263 0.498 1.414 sum -6.228 -13.504 6.687 16.305 Atomic orbital electron populations 1.69263 1.06204 1.28089 1.50466 1.25073 0.95033 0.99954 0.93000 0.86255 0.80154 0.82148 0.77842 1.19361 1.20671 1.20647 1.21476 0.94030 0.89677 1.51731 0.90806 1.19515 0.85429 0.91117 0.84244 1.86037 1.45208 1.48355 1.59009 1.23346 0.93904 0.91939 0.92083 1.49547 1.41767 1.04501 1.40102 1.19172 0.82509 0.81393 0.82304 1.90648 1.58476 1.40868 1.55119 1.20981 1.01373 0.90699 1.02455 1.19463 0.92234 0.96320 0.91809 1.21034 0.96671 0.94228 0.97995 1.21565 0.99342 0.94048 0.96821 1.17191 0.95735 0.78579 1.00659 1.91570 1.94373 1.30182 1.94196 1.20805 0.97908 0.92982 0.99629 1.20521 0.89906 0.93253 1.04849 1.43372 1.01327 1.00946 0.99151 1.94517 1.46512 1.63142 1.33557 1.94568 1.76098 0.99830 1.65245 1.24207 1.00429 0.77677 1.02758 0.91662 0.74972 0.89487 0.91661 0.85693 0.87198 0.82290 0.82613 0.81809 0.91768 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.03 11.01 55.43 0.61 -21.42 16 2 C 0.07 1.73 5.39 -17.82 -0.10 1.64 16 3 Si 0.91 19.03 29.54 -169.99 -5.02 14.01 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.53 -12.97 8.70 -34.44 -0.30 -13.27 16 8 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.24 5.55 1.57 -91.39 -0.14 5.41 16 10 O -0.57 -14.24 13.53 -35.23 -0.48 -14.72 16 11 C 0.11 2.37 8.03 -8.51 -0.07 2.30 16 12 N -0.63 -12.91 3.69 -185.37 -0.68 -13.59 16 13 C 0.56 10.87 6.41 -10.99 -0.07 10.80 16 14 O -0.57 -12.78 16.69 5.56 0.09 -12.68 16 15 C -0.12 -1.68 4.96 -29.03 -0.14 -1.82 16 16 C 0.00 0.05 4.45 -104.62 -0.47 -0.42 16 17 C -0.08 -0.79 9.67 -39.60 -0.38 -1.17 16 18 C -0.10 -0.82 10.03 -39.51 -0.40 -1.22 16 19 C 0.10 0.96 7.30 -39.42 -0.29 0.67 16 20 F -0.12 -1.20 17.27 2.25 0.04 -1.16 16 21 C -0.09 -1.06 9.54 -39.51 -0.38 -1.43 16 22 C 0.00 -0.03 6.66 -79.97 -0.53 -0.56 16 23 N 0.03 0.53 4.45 33.95 0.15 0.68 16 24 O -0.16 -2.62 18.46 -29.46 -0.54 -3.17 16 25 O -0.14 -2.50 14.17 -29.62 -0.42 -2.92 16 26 C 0.07 1.49 7.83 -8.64 -0.07 1.42 16 27 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 28 H 0.39 9.87 6.32 45.56 0.29 10.16 16 29 H 0.09 1.76 8.10 -51.93 -0.42 1.34 16 30 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.13 1.78 6.17 -51.93 -0.32 1.45 16 32 H 0.11 1.32 7.99 -51.93 -0.42 0.91 16 33 H 0.16 1.15 8.03 -52.49 -0.42 0.73 16 34 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.16 1.62 7.62 -52.48 -0.40 1.22 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 LS Contribution 333.47 15.07 5.03 5.03 Total: -1.00 -29.62 333.47 -7.48 -37.10 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -2.92 Total: 10.49 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -3.33 Total: 2.35 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.08 Total: -34.33 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -1.35 Total: -33.48 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.02 Total: 14.01 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.62 -7.48 -37.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326514629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.199 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds