Wall clock time and date at job start Tue Mar 31 2020 14:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00207 * 2 1 4 4 H 1.48507 * 109.47335 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47186 * 299.99825 * 3 2 1 6 6 H 1.48505 * 109.47198 * 59.99651 * 3 2 1 7 7 C 1.37880 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00530 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99780 * 0.02562 * 7 2 1 10 10 O 1.42894 * 113.28009 * 46.93345 * 9 7 2 11 11 C 1.53499 * 114.20356 * 180.02562 * 9 7 2 12 12 N 1.47062 * 87.98475 * 139.85430 * 11 9 7 13 13 C 1.34775 * 136.06081 * 152.84264 * 12 11 9 14 14 O 1.21282 * 120.00011 * 359.97438 * 13 12 11 15 15 C 1.50700 * 120.00009 * 180.27285 * 13 12 11 16 16 C 1.50703 * 109.47030 * 179.72529 * 15 13 12 17 17 C 1.38260 * 119.97560 * 259.21623 * 16 15 13 18 18 C 1.38177 * 120.02840 * 179.97438 * 17 16 15 19 19 C 1.38481 * 119.97443 * 0.02562 * 18 17 16 20 20 F 1.35101 * 120.02712 * 179.97438 * 19 18 17 21 21 C 1.38440 * 119.94585 * 0.02562 * 19 18 17 22 22 C 1.38219 * 119.97369 * 359.70389 * 21 19 18 23 23 N 1.48007 * 119.98637 * 180.29146 * 22 21 19 24 24 O 1.21798 * 119.99983 * 354.14676 * 23 22 21 25 25 O 1.21799 * 119.99986 * 174.13842 * 23 22 21 26 26 C 1.47072 * 87.88538 * 333.09729 * 12 11 9 27 27 H 0.96997 * 119.99715 * 0.02562 * 1 2 3 28 28 H 0.96702 * 113.99957 * 313.06612 * 10 9 7 29 29 H 1.08998 * 113.47111 * 25.06947 * 11 9 7 30 30 H 1.09005 * 113.46233 * 254.62930 * 11 9 7 31 31 H 1.09005 * 109.47177 * 299.72203 * 15 13 12 32 32 H 1.08991 * 109.47275 * 59.72836 * 15 13 12 33 33 H 1.07998 * 119.98998 * 359.97438 * 17 16 15 34 34 H 1.07999 * 120.01338 * 180.02562 * 18 17 16 35 35 H 1.08010 * 120.01226 * 180.02562 * 21 19 18 36 36 H 1.08998 * 113.46556 * 141.68245 * 26 12 11 37 37 H 1.09001 * 113.46969 * 272.12329 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 8 0.1928 -2.5403 -0.9588 11 6 2.1488 -3.7443 0.0018 12 7 1.2065 -4.3590 0.9489 13 6 0.8300 -5.6133 1.2671 14 8 1.3255 -6.5594 0.6923 15 6 -0.2117 -5.8401 2.3322 16 6 -0.4551 -7.3189 2.4900 17 6 -1.5641 -7.9026 1.9060 18 6 -1.7881 -9.2585 2.0495 19 6 -0.9016 -10.0328 2.7792 20 9 -1.1199 -11.3585 2.9206 21 6 0.2078 -9.4470 3.3644 22 6 0.4328 -8.0915 3.2148 23 7 1.6223 -7.4661 3.8349 24 8 2.3445 -8.1218 4.5643 25 8 1.8791 -6.2959 3.6157 26 6 0.8512 -3.0023 1.3917 27 1 -0.4849 0.8400 -0.0004 28 1 -0.3709 -1.7545 -0.9566 29 1 3.1369 -3.5665 0.4261 30 1 2.1884 -4.2517 -0.9621 31 1 0.1395 -5.4268 3.2778 32 1 -1.1401 -5.3479 2.0430 33 1 -2.2555 -7.2986 1.3373 34 1 -2.6542 -9.7143 1.5928 35 1 0.9002 -10.0500 3.9334 36 1 -0.2102 -2.8802 1.6073 37 1 1.4902 -2.6248 2.1900 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326514629.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:20 Heat of formation + Delta-G solvation = -76.195262 kcal Electronic energy + Delta-G solvation = -27385.760310 eV Core-core repulsion = 23047.216580 eV Total energy + Delta-G solvation = -4338.543730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.23033 -43.48743 -41.39972 -40.47757 -39.01004 -37.83110 -35.85835 -34.09642 -34.01311 -33.23060 -30.89018 -29.05081 -27.64214 -26.86620 -26.56111 -24.17872 -23.46474 -21.93489 -20.56733 -20.02441 -19.83708 -19.28807 -18.78285 -18.00350 -17.89265 -17.60979 -17.41455 -16.97431 -16.89623 -16.46817 -16.28735 -15.87882 -15.24231 -15.10758 -14.77650 -14.42610 -14.25863 -13.88730 -13.58550 -13.49044 -13.40946 -13.35375 -13.00680 -12.77843 -12.72606 -12.69068 -12.38553 -12.21609 -12.11135 -11.94034 -11.42117 -11.00206 -10.81344 -10.64475 -10.25695 -10.10492 -9.57025 -8.25997 -6.41734 -1.42244 -0.41270 0.08014 0.23604 1.47374 1.52560 1.62118 1.63213 1.81446 2.15374 2.43295 2.70903 2.96264 3.12754 3.13423 3.49907 3.52619 3.59152 3.79474 3.89165 4.09434 4.17462 4.34845 4.44262 4.49566 4.51416 4.62683 4.67855 4.81938 4.85545 4.92351 4.95796 5.05228 5.28773 5.34106 5.75752 5.93964 6.35682 6.63688 6.89961 7.10804 7.32056 7.52502 8.80391 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.003049 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.175118 B = 9182.570215 C = 9769.271244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.035 3.965 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.222 3.778 10 O -0.584 6.584 11 C 0.106 3.894 12 N -0.632 5.632 13 C 0.552 3.448 14 O -0.602 6.602 15 C -0.107 4.107 16 C -0.016 4.016 17 C -0.075 4.075 18 C -0.075 4.075 19 C 0.103 3.897 20 F -0.121 7.121 21 C -0.098 4.098 22 C -0.024 4.024 23 N 0.034 4.966 24 O -0.163 6.163 25 O -0.188 6.188 26 C 0.088 3.912 27 H 0.277 0.723 28 H 0.390 0.610 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.189 0.811 34 H 0.199 0.801 35 H 0.172 0.828 36 H 0.072 0.928 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 -14.120 7.059 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.166 4.166 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.590 4.590 8 H 0.089 0.911 9 C 0.181 3.819 10 O -0.397 6.397 11 C -0.016 4.016 12 N -0.363 5.363 13 C 0.343 3.657 14 O -0.486 6.486 15 C -0.146 4.146 16 C -0.018 4.018 17 C -0.093 4.093 18 C -0.093 4.093 19 C 0.083 3.917 20 F -0.099 7.099 21 C -0.118 4.118 22 C -0.108 4.108 23 N 0.548 4.452 24 O -0.380 6.380 25 O -0.396 6.396 26 C -0.035 4.035 27 H 0.087 0.913 28 H 0.246 0.754 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.143 0.857 32 H 0.156 0.844 33 H 0.207 0.793 34 H 0.216 0.784 35 H 0.189 0.811 36 H 0.090 0.910 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.468 -15.571 6.393 18.842 hybrid contribution 0.915 1.343 0.402 1.674 sum -7.553 -14.228 6.795 17.483 Atomic orbital electron populations 1.69308 1.06956 1.28882 1.50388 1.25703 0.95800 1.02446 0.92608 0.85347 0.78908 0.78695 0.77712 1.19423 1.20711 1.20152 1.21675 0.94122 0.90665 1.52560 0.91118 1.19713 0.85478 0.91362 0.85388 1.86019 1.45600 1.48167 1.59948 1.23309 0.94570 0.91629 0.92120 1.49608 1.41678 1.05103 1.39952 1.20043 0.82792 0.80260 0.82564 1.90615 1.59785 1.41605 1.56548 1.20913 1.00621 0.92576 1.00455 1.19585 0.93652 0.95456 0.93106 1.21428 0.95734 0.95146 0.97027 1.22019 0.99489 0.93172 0.94616 1.17278 0.95344 0.78788 1.00271 1.91591 1.94247 1.29955 1.94128 1.20960 0.98843 0.92089 0.99908 1.20697 0.89322 0.94284 1.06490 1.43759 1.01918 1.00719 0.98827 1.94473 1.47187 1.62844 1.33542 1.94556 1.77401 1.00885 1.66765 1.23961 1.00923 0.77393 1.01248 0.91306 0.75391 0.88602 0.92964 0.85727 0.84418 0.79334 0.78433 0.81086 0.90962 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.41 11.01 21.45 0.24 -44.18 16 2 C 0.04 1.68 5.39 84.66 0.46 2.14 16 3 Si 0.97 38.67 29.54 68.60 2.03 40.70 16 4 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.55 -27.11 8.70 25.60 0.22 -26.89 16 8 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 9 C 0.22 10.41 1.57 -11.29 -0.02 10.39 16 10 O -0.58 -29.30 13.53 -148.98 -2.02 -31.31 16 11 C 0.11 4.70 8.03 83.18 0.67 5.37 16 12 N -0.63 -26.15 3.69 -859.27 -3.17 -29.32 16 13 C 0.55 21.51 6.41 87.66 0.56 22.08 16 14 O -0.60 -27.22 16.69 -3.04 -0.05 -27.27 16 15 C -0.11 -2.99 4.96 29.10 0.14 -2.85 16 16 C -0.02 -0.39 4.45 -19.86 -0.09 -0.48 16 17 C -0.08 -1.19 9.67 22.26 0.22 -0.97 16 18 C -0.07 -0.90 10.03 22.31 0.22 -0.68 16 19 C 0.10 1.69 7.30 22.38 0.16 1.86 16 20 F -0.12 -1.93 17.27 44.97 0.78 -1.15 16 21 C -0.10 -2.07 9.54 22.31 0.21 -1.86 16 22 C -0.02 -0.66 6.66 36.37 0.24 -0.41 16 23 N 0.03 1.12 4.45 -46.49 -0.21 0.91 16 24 O -0.16 -5.32 18.46 18.89 0.35 -4.97 16 25 O -0.19 -6.97 14.17 19.04 0.27 -6.70 16 26 C 0.09 3.59 7.83 83.09 0.65 4.24 16 27 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 28 H 0.39 19.73 6.32 -74.06 -0.47 19.26 16 29 H 0.10 3.98 8.10 -2.39 -0.02 3.96 16 30 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.12 3.53 6.17 -2.38 -0.01 3.52 16 32 H 0.14 3.00 7.99 -2.39 -0.02 2.98 16 33 H 0.19 1.84 8.03 -2.91 -0.02 1.81 16 34 H 0.20 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.17 3.21 7.62 -2.91 -0.02 3.19 16 36 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.09 3.58 8.10 -2.39 -0.02 3.56 16 Total: -1.00 -64.96 333.47 2.55 -62.41 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.68 Total: 28.95 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 3.66 Total: 11.94 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -3.14 Total: -72.59 kcal Atomic # 8 Polarization: -68.81 SS G_CDS: -1.45 Total: -70.25 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -64.96 2.55 -62.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326514629.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.784 kcal (2) G-P(sol) polarization free energy of solvation -64.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds