Wall clock time and date at job start Tue Mar 31 2020 14:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47261 * 239.99990 * 3 2 1 5 5 H 1.48500 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47048 * 120.00042 * 3 2 1 7 7 C 1.37880 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00188 * 183.26113 * 7 2 1 9 9 C 1.50699 * 119.99789 * 3.26281 * 7 2 1 10 10 C 1.53001 * 115.55208 * 324.19102 * 9 7 2 11 11 O 1.45196 * 109.47090 * 306.45832 * 10 9 7 12 12 C 1.34785 * 117.00140 * 175.24513 * 11 10 9 13 13 O 1.21548 * 119.99662 * 5.18051 * 12 11 10 14 14 C 1.47163 * 120.00471 * 185.18539 * 12 11 10 15 15 C 1.39877 * 120.18357 * 353.54990 * 14 12 11 16 16 C 1.37606 * 119.94324 * 179.97438 * 15 14 12 17 17 N 1.48018 * 119.83215 * 180.02562 * 16 15 14 18 18 O 1.21803 * 120.00090 * 359.97438 * 17 16 15 19 19 O 1.21797 * 120.00153 * 179.97438 * 17 16 15 20 20 C 1.38926 * 120.33422 * 0.02562 * 16 15 14 21 21 F 1.35099 * 119.80929 * 179.97438 * 20 16 15 22 22 C 1.38244 * 120.38066 * 0.26934 * 20 16 15 23 23 C 1.38820 * 120.04660 * 359.44763 * 22 20 16 24 24 N 1.38844 * 120.16843 * 180.27523 * 23 22 20 25 25 C 1.53007 * 117.49987 * 109.86739 * 9 7 2 26 26 C 1.53004 * 117.49877 * 178.52430 * 9 7 2 27 27 H 0.96999 * 119.99786 * 5.00448 * 1 2 3 28 28 H 1.09002 * 109.47101 * 186.45973 * 10 9 7 29 29 H 1.08998 * 109.47017 * 66.46113 * 10 9 7 30 30 H 1.07998 * 120.02910 * 0.02562 * 15 14 12 31 31 H 1.08010 * 119.97476 * 179.72849 * 22 20 16 32 32 H 0.96999 * 119.99936 * 186.85051 * 24 23 22 33 33 H 0.97003 * 119.99703 * 6.84527 * 24 23 22 34 34 H 1.08997 * 117.49741 * 214.99926 * 25 9 7 35 35 H 1.09002 * 117.49253 * 0.02562 * 25 9 7 36 36 H 1.09009 * 117.49757 * 359.97253 * 26 9 7 37 37 H 1.08992 * 117.50376 * 144.96733 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0832 -1.1949 0.0527 9 6 1.2528 -2.4981 -0.0754 10 6 -0.0848 -2.5322 0.6665 11 8 0.1152 -2.1197 2.0442 12 6 -0.9854 -1.9997 2.8130 13 8 -2.0716 -2.3234 2.3739 14 6 -0.8720 -1.4768 4.1839 15 6 0.3873 -1.2300 4.7406 16 6 0.4875 -0.7405 6.0227 17 7 1.8213 -0.4797 6.6092 18 8 2.8266 -0.6988 5.9573 19 8 1.9136 -0.0460 7.7435 20 6 -0.6568 -0.4899 6.7695 21 9 -0.5461 -0.0098 8.0275 22 6 -1.9080 -0.7346 6.2350 23 6 -2.0278 -1.2228 4.9410 24 7 -3.2833 -1.4641 4.3997 25 6 1.3624 -3.3033 -1.3718 26 6 2.0761 -3.7873 -0.1071 27 1 -0.4850 0.8369 -0.0733 28 1 -0.4863 -3.5454 0.6453 29 1 -0.7864 -1.8531 0.1821 30 1 1.2801 -1.4227 4.1643 31 1 -2.7932 -0.5415 6.8230 32 1 -3.3638 -1.8972 3.5355 33 1 -4.0800 -1.1996 4.8857 34 1 0.4816 -3.8573 -1.6961 35 1 1.9786 -2.8900 -2.1703 36 1 3.1616 -3.6923 -0.0742 37 1 1.6651 -4.6596 0.4010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327099793.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:03 Heat of formation + Delta-G solvation = -71.061870 kcal Electronic energy + Delta-G solvation = -27692.234256 eV Core-core repulsion = 23353.913127 eV Total energy + Delta-G solvation = -4338.321129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.49312 -41.90748 -40.51668 -38.80981 -36.88724 -36.31358 -35.65669 -34.68468 -32.26519 -31.55452 -30.39753 -26.78180 -25.80099 -25.51461 -24.23884 -22.77074 -21.39907 -21.03998 -19.33089 -19.16450 -18.64315 -18.30383 -17.51711 -17.43822 -16.87212 -16.82836 -16.04226 -16.01752 -15.62408 -15.41073 -14.74615 -14.70087 -14.53538 -13.82843 -13.56627 -13.37764 -13.08070 -12.42283 -12.18328 -12.10784 -11.63592 -11.34715 -11.33238 -11.08724 -11.01304 -10.91540 -10.88751 -10.58703 -10.45391 -10.25534 -9.77197 -9.57975 -9.45954 -9.07638 -8.87119 -8.42243 -8.32957 -6.11495 -4.21562 -0.05494 0.36554 1.36248 1.50139 2.46618 3.07941 3.19387 3.25624 3.29891 3.34651 3.44457 3.58872 4.04257 4.29778 4.45104 4.61650 4.87124 4.99176 5.04255 5.34644 5.38652 5.48980 5.60394 5.89601 5.93235 6.09402 6.33333 6.47405 6.51834 6.55665 6.62852 6.78208 6.85966 7.12116 7.18190 7.31583 7.56920 7.80277 7.83723 8.20082 8.32178 8.76408 9.41395 10.85717 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.004766 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.349999 B = 5873.177909 C = 6767.478222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.074 3.926 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.476 4.476 8 H 0.064 0.936 9 C 0.042 3.958 10 C 0.121 3.879 11 O -0.307 6.307 12 C 0.525 3.475 13 O -0.533 6.533 14 C -0.211 4.211 15 C 0.085 3.915 16 C -0.162 4.162 17 N 0.044 4.956 18 O -0.158 6.158 19 O -0.171 6.171 20 C 0.242 3.758 21 F -0.101 7.101 22 C -0.256 4.256 23 C 0.347 3.653 24 N -0.822 5.822 25 C -0.193 4.193 26 C -0.208 4.208 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.120 0.880 30 H 0.181 0.819 31 H 0.162 0.838 32 H 0.428 0.572 33 H 0.403 0.597 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.753 -2.674 10.207 13.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.128 4.128 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.042 3.958 10 C 0.049 3.951 11 O -0.219 6.219 12 C 0.372 3.628 13 O -0.427 6.427 14 C -0.218 4.218 15 C 0.065 3.935 16 C -0.250 4.250 17 N 0.561 4.439 18 O -0.373 6.373 19 O -0.383 6.383 20 C 0.219 3.781 21 F -0.078 7.078 22 C -0.280 4.280 23 C 0.228 3.772 24 N -0.366 5.366 25 C -0.231 4.231 26 C -0.245 4.245 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.138 0.862 30 H 0.199 0.801 31 H 0.180 0.820 32 H 0.273 0.727 33 H 0.232 0.768 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.828 -2.793 9.778 13.466 hybrid contribution 0.329 0.968 0.094 1.026 sum -8.499 -1.826 9.872 13.153 Atomic orbital electron populations 1.69748 1.05945 1.26911 1.50143 1.24921 0.94869 0.99215 0.93834 0.86597 0.79684 0.82475 0.79084 1.20079 1.21287 1.19671 1.20464 0.92721 0.88325 1.49827 0.91801 1.18938 0.92344 0.90793 0.93761 1.23001 0.99956 0.96447 0.75737 1.86520 1.32603 1.76993 1.25802 1.20215 0.83278 0.74338 0.84939 1.90384 1.28566 1.49759 1.73999 1.18611 0.91533 1.16761 0.94899 1.21145 0.99667 0.82947 0.89734 1.20714 0.82311 1.23837 0.98153 1.43156 1.02323 0.97990 1.00468 1.94592 1.25571 1.55805 1.61321 1.94551 1.93514 1.46861 1.03393 1.17057 0.91677 0.90163 0.79168 1.91661 1.96747 1.83702 1.35737 1.20386 0.96544 1.14960 0.96097 1.17576 0.86135 0.84184 0.89321 1.43769 1.03633 1.62743 1.26492 1.22994 1.01574 1.05940 0.92614 1.22976 0.98762 0.99790 1.02978 0.92769 0.95670 0.86210 0.80145 0.82032 0.72676 0.76845 0.91412 0.89690 0.90123 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.07 10.23 55.43 0.57 -22.50 16 2 C 0.07 1.89 5.33 -17.82 -0.10 1.79 16 3 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.48 -12.23 8.77 -34.44 -0.30 -12.53 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.04 0.98 2.20 -155.65 -0.34 0.64 16 10 C 0.12 2.74 4.38 37.16 0.16 2.90 16 11 O -0.31 -6.63 8.99 -40.72 -0.37 -6.99 16 12 C 0.53 9.85 7.86 34.35 0.27 10.12 16 13 O -0.53 -10.06 13.43 -19.30 -0.26 -10.32 16 14 C -0.21 -3.24 5.89 -104.82 -0.62 -3.86 16 15 C 0.09 1.32 9.11 -39.20 -0.36 0.96 16 16 C -0.16 -2.45 6.85 -79.92 -0.55 -2.99 16 17 N 0.04 0.76 4.45 33.97 0.15 0.91 16 18 O -0.16 -2.89 18.42 -29.46 -0.54 -3.43 16 19 O -0.17 -2.97 17.40 -29.46 -0.51 -3.49 16 20 C 0.24 3.07 7.25 -39.32 -0.29 2.79 16 21 F -0.10 -1.30 15.45 2.25 0.03 -1.26 16 22 C -0.26 -2.60 9.85 -39.36 -0.39 -2.98 16 23 C 0.35 4.17 6.76 -83.63 -0.57 3.61 16 24 N -0.82 -8.23 8.92 32.54 0.29 -7.94 16 25 C -0.19 -4.03 9.96 -26.69 -0.27 -4.29 16 26 C -0.21 -4.24 9.92 -26.69 -0.26 -4.50 16 27 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 28 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 29 H 0.12 2.98 5.93 -51.93 -0.31 2.67 16 30 H 0.18 2.98 7.15 -52.49 -0.38 2.60 16 31 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.43 5.23 5.35 -40.93 -0.22 5.01 16 33 H 0.40 2.46 8.84 -40.82 -0.36 2.09 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 334.42 15.07 5.04 5.04 Total: -1.00 -28.26 334.42 -7.56 -35.82 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -3.34 Total: 7.08 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -3.60 Total: -8.35 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 1.01 Total: -29.53 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -1.68 Total: -24.23 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.03 Total: -1.26 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.26 -7.56 -35.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327099793.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.240 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds