Wall clock time and date at job start Tue Mar 31 2020 14:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48497 * 109.47261 * 239.99990 * 3 2 1 5 5 H 1.48500 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47048 * 120.00042 * 3 2 1 7 7 C 1.37880 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00188 * 183.26113 * 7 2 1 9 9 C 1.50699 * 119.99789 * 3.26281 * 7 2 1 10 10 C 1.53001 * 115.55208 * 324.19102 * 9 7 2 11 11 O 1.45196 * 109.47090 * 306.45832 * 10 9 7 12 12 C 1.34785 * 117.00140 * 175.24513 * 11 10 9 13 13 O 1.21548 * 119.99662 * 5.18051 * 12 11 10 14 14 C 1.47163 * 120.00471 * 185.18539 * 12 11 10 15 15 C 1.39877 * 120.18357 * 353.54990 * 14 12 11 16 16 C 1.37606 * 119.94324 * 179.97438 * 15 14 12 17 17 N 1.48018 * 119.83215 * 180.02562 * 16 15 14 18 18 O 1.21803 * 120.00090 * 359.97438 * 17 16 15 19 19 O 1.21797 * 120.00153 * 179.97438 * 17 16 15 20 20 C 1.38926 * 120.33422 * 0.02562 * 16 15 14 21 21 F 1.35099 * 119.80929 * 179.97438 * 20 16 15 22 22 C 1.38244 * 120.38066 * 0.26934 * 20 16 15 23 23 C 1.38820 * 120.04660 * 359.44763 * 22 20 16 24 24 N 1.38844 * 120.16843 * 180.27523 * 23 22 20 25 25 C 1.53007 * 117.49987 * 109.86739 * 9 7 2 26 26 C 1.53004 * 117.49877 * 178.52430 * 9 7 2 27 27 H 0.96999 * 119.99786 * 5.00448 * 1 2 3 28 28 H 1.09002 * 109.47101 * 186.45973 * 10 9 7 29 29 H 1.08998 * 109.47017 * 66.46113 * 10 9 7 30 30 H 1.07998 * 120.02910 * 0.02562 * 15 14 12 31 31 H 1.08010 * 119.97476 * 179.72849 * 22 20 16 32 32 H 0.96999 * 119.99936 * 186.85051 * 24 23 22 33 33 H 0.97003 * 119.99703 * 6.84527 * 24 23 22 34 34 H 1.08997 * 117.49741 * 214.99926 * 25 9 7 35 35 H 1.09002 * 117.49253 * 0.02562 * 25 9 7 36 36 H 1.09009 * 117.49757 * 359.97253 * 26 9 7 37 37 H 1.08992 * 117.50376 * 144.96733 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0832 -1.1949 0.0527 9 6 1.2528 -2.4981 -0.0754 10 6 -0.0848 -2.5322 0.6665 11 8 0.1152 -2.1197 2.0442 12 6 -0.9854 -1.9997 2.8130 13 8 -2.0716 -2.3234 2.3739 14 6 -0.8720 -1.4768 4.1839 15 6 0.3873 -1.2300 4.7406 16 6 0.4875 -0.7405 6.0227 17 7 1.8213 -0.4797 6.6092 18 8 2.8266 -0.6988 5.9573 19 8 1.9136 -0.0460 7.7435 20 6 -0.6568 -0.4899 6.7695 21 9 -0.5461 -0.0098 8.0275 22 6 -1.9080 -0.7346 6.2350 23 6 -2.0278 -1.2228 4.9410 24 7 -3.2833 -1.4641 4.3997 25 6 1.3624 -3.3033 -1.3718 26 6 2.0761 -3.7873 -0.1071 27 1 -0.4850 0.8369 -0.0733 28 1 -0.4863 -3.5454 0.6453 29 1 -0.7864 -1.8531 0.1821 30 1 1.2801 -1.4227 4.1643 31 1 -2.7932 -0.5415 6.8230 32 1 -3.3638 -1.8972 3.5355 33 1 -4.0800 -1.1996 4.8857 34 1 0.4816 -3.8573 -1.6961 35 1 1.9786 -2.8900 -2.1703 36 1 3.1616 -3.6923 -0.0742 37 1 1.6651 -4.6596 0.4010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327099793.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:02 Heat of formation + Delta-G solvation = -85.671578 kcal Electronic energy + Delta-G solvation = -27692.867780 eV Core-core repulsion = 23353.913127 eV Total energy + Delta-G solvation = -4338.954654 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.49718 -43.19578 -41.81427 -40.13453 -38.51383 -37.64727 -37.09154 -35.89133 -34.19036 -32.67285 -31.49234 -28.44194 -27.43398 -27.01337 -25.43766 -23.91755 -23.01163 -22.40561 -21.10602 -20.46451 -19.91228 -19.32093 -18.73355 -18.71447 -18.49707 -18.16265 -17.44354 -17.30505 -16.99523 -16.52163 -16.46519 -15.97317 -15.64655 -15.37355 -14.98024 -14.51848 -14.41079 -13.82909 -13.74630 -13.48069 -13.40083 -12.95297 -12.74835 -12.70448 -12.40393 -12.36995 -12.31020 -12.29903 -12.12656 -11.82017 -11.42506 -11.28173 -10.90196 -10.68803 -10.53545 -10.15736 -9.41120 -8.04337 -6.19242 -1.24664 -0.77656 0.17334 0.29338 1.19797 1.40252 1.43384 1.48705 1.75388 2.16742 2.19939 2.40424 2.57922 2.98688 3.04150 3.28851 3.51455 3.64411 3.86223 4.01163 4.23301 4.26740 4.32710 4.39483 4.44274 4.61907 4.75888 4.86412 4.93406 4.98341 5.19337 5.25505 5.45142 5.53002 5.59791 5.84368 6.00273 6.32824 6.47065 6.57319 6.73801 6.85755 7.44017 8.89626 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.004766 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.349999 B = 5873.177909 C = 6767.478222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.038 3.962 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.492 4.492 8 H 0.052 0.948 9 C 0.003 3.997 10 C 0.131 3.869 11 O -0.327 6.327 12 C 0.518 3.482 13 O -0.540 6.540 14 C -0.229 4.229 15 C 0.083 3.917 16 C -0.174 4.174 17 N 0.046 4.954 18 O -0.206 6.206 19 O -0.166 6.166 20 C 0.243 3.757 21 F -0.098 7.098 22 C -0.218 4.218 23 C 0.359 3.641 24 N -0.802 5.802 25 C -0.183 4.183 26 C -0.190 4.190 27 H 0.259 0.741 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.160 0.840 31 H 0.213 0.787 32 H 0.422 0.578 33 H 0.425 0.575 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 -2.734 11.435 15.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.003 3.997 10 C 0.058 3.942 11 O -0.241 6.241 12 C 0.366 3.634 13 O -0.434 6.434 14 C -0.236 4.236 15 C 0.063 3.937 16 C -0.262 4.262 17 N 0.557 4.443 18 O -0.410 6.410 19 O -0.382 6.382 20 C 0.220 3.780 21 F -0.076 7.076 22 C -0.242 4.242 23 C 0.236 3.764 24 N -0.345 5.345 25 C -0.221 4.221 26 C -0.227 4.227 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.112 0.888 30 H 0.177 0.823 31 H 0.230 0.770 32 H 0.265 0.735 33 H 0.259 0.741 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.038 -2.871 10.964 15.820 hybrid contribution 0.850 0.949 -0.239 1.296 sum -10.188 -1.923 10.725 14.917 Atomic orbital electron populations 1.69885 1.06447 1.26919 1.50729 1.25425 0.95543 1.01227 0.93984 0.85897 0.78737 0.80056 0.78734 1.19600 1.21005 1.20365 1.20658 0.92417 0.89929 1.49963 0.92985 1.19086 0.93440 0.91102 0.96072 1.22691 0.98930 0.96277 0.76301 1.86514 1.34295 1.77714 1.25531 1.20732 0.82637 0.74155 0.85838 1.90377 1.28374 1.50102 1.74537 1.18464 0.92772 1.18695 0.93684 1.20883 0.99273 0.83554 0.89980 1.20749 0.81677 1.25395 0.98411 1.43434 1.03043 0.97532 1.00303 1.94593 1.26797 1.57960 1.61690 1.94508 1.93815 1.46262 1.03612 1.17134 0.91528 0.90246 0.79082 1.91673 1.96754 1.83635 1.35544 1.20743 0.96993 1.11549 0.94892 1.17593 0.85707 0.83477 0.89624 1.43749 1.03866 1.60822 1.26039 1.22993 1.02137 1.04952 0.92003 1.22987 0.98614 0.98805 1.02338 0.93149 0.94486 0.88795 0.82273 0.77039 0.73460 0.74098 0.89589 0.89999 0.90062 0.89276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.50 10.23 21.45 0.22 -47.28 16 2 C 0.04 1.99 5.33 84.66 0.45 2.44 16 3 Si 0.94 42.60 29.54 68.60 2.03 44.63 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 7 C -0.49 -25.81 8.77 25.60 0.22 -25.58 16 8 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.00 0.16 2.20 -52.92 -0.12 0.04 16 10 C 0.13 5.98 4.38 71.98 0.32 6.30 16 11 O -0.33 -14.46 8.99 -56.96 -0.51 -14.97 16 12 C 0.52 19.43 7.86 70.17 0.55 19.99 16 13 O -0.54 -20.02 13.43 19.68 0.26 -19.76 16 14 C -0.23 -6.85 5.89 -19.99 -0.12 -6.97 16 15 C 0.08 2.63 9.11 22.52 0.21 2.84 16 16 C -0.17 -5.16 6.85 36.39 0.25 -4.91 16 17 N 0.05 1.61 4.45 -46.42 -0.21 1.41 16 18 O -0.21 -7.97 18.42 18.88 0.35 -7.62 16 19 O -0.17 -5.73 17.40 18.89 0.33 -5.40 16 20 C 0.24 5.51 7.25 22.44 0.16 5.67 16 21 F -0.10 -2.24 15.45 44.97 0.69 -1.55 16 22 C -0.22 -3.44 9.85 22.41 0.22 -3.22 16 23 C 0.36 7.47 6.76 38.72 0.26 7.74 16 24 N -0.80 -13.05 8.92 -50.96 -0.45 -13.51 16 25 C -0.18 -7.48 9.96 30.62 0.30 -7.17 16 26 C -0.19 -7.61 9.92 30.62 0.30 -7.30 16 27 H 0.26 13.30 8.32 -92.71 -0.77 12.52 16 28 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 29 H 0.09 4.77 5.93 -2.39 -0.01 4.75 16 30 H 0.16 5.66 7.15 -2.91 -0.02 5.64 16 31 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 32 H 0.42 9.16 5.35 -94.48 -0.51 8.66 16 33 H 0.43 3.07 8.84 -92.71 -0.82 2.25 16 34 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 35 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 37 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -62.92 334.42 5.57 -57.35 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -0.15 Total: 16.85 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 3.02 Total: -10.14 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.44 Total: -59.38 kcal Atomic # 8 Polarization: -48.19 SS G_CDS: 0.43 Total: -47.76 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.69 Total: -1.55 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -62.92 5.57 -57.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327099793.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.324 kcal (2) G-P(sol) polarization free energy of solvation -62.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds