Wall clock time and date at job start Tue Mar 31 2020 14:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 119.99756 * 2 1 4 4 H 1.48496 * 109.46881 * 274.66277 * 3 2 1 5 5 H 1.48501 * 109.47093 * 34.66411 * 3 2 1 6 6 H 1.48495 * 109.46833 * 154.66480 * 3 2 1 7 7 C 1.39943 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99427 * 162.23204 * 7 2 1 9 9 C 1.41393 * 120.00494 * 342.23781 * 7 2 1 10 10 C 1.40707 * 120.24737 * 155.28843 * 9 7 2 11 11 C 1.37619 * 119.74674 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24606 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.74544 * 179.97438 * 12 11 10 14 14 S 1.81404 * 109.47106 * 90.00435 * 13 12 11 15 15 C 1.81405 * 102.99866 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47054 * 179.97438 * 15 14 13 17 17 N 1.30503 * 125.65194 * 89.97428 * 16 15 14 18 18 C 1.34126 * 109.25854 * 180.02562 * 17 16 15 19 19 C 1.34674 * 108.01867 * 359.97438 * 18 17 16 20 20 N 1.35044 * 125.64919 * 270.28514 * 16 15 14 21 21 C 1.46494 * 126.39835 * 0.02562 * 20 16 15 22 22 F 1.39903 * 109.47163 * 210.14141 * 21 20 16 23 23 F 1.39896 * 109.47517 * 330.14529 * 21 20 16 24 24 C 1.38636 * 120.50158 * 0.25300 * 12 11 10 25 25 C 1.37617 * 120.24983 * 359.44481 * 24 12 11 26 26 H 0.96994 * 119.99961 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.12690 * 359.97438 * 10 9 7 28 28 H 1.08006 * 119.87453 * 180.02562 * 11 10 9 29 29 H 1.08997 * 109.47218 * 330.00038 * 13 12 11 30 30 H 1.09004 * 109.47085 * 209.99720 * 13 12 11 31 31 H 1.09002 * 109.47104 * 59.99773 * 15 14 13 32 32 H 1.09003 * 109.46528 * 299.99686 * 15 14 13 33 33 H 1.07994 * 125.98899 * 179.97438 * 18 17 16 34 34 H 1.07994 * 126.58647 * 179.97438 * 19 18 17 35 35 H 1.09008 * 109.47242 * 90.14830 * 21 20 16 36 36 H 1.08001 * 119.87174 * 179.70738 * 24 12 11 37 37 H 1.07991 * 120.13195 * 180.27637 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6222 0.7963 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2344 -0.2849 9 6 1.3516 -2.4072 0.3746 10 6 1.8218 -3.6493 -0.0900 11 6 1.1748 -4.8061 0.2801 12 6 0.0634 -4.7507 1.1070 13 6 -0.6369 -6.0245 1.5047 14 16 0.0959 -6.6646 3.0358 15 6 -0.8634 -8.1723 3.3480 16 6 -0.3662 -8.8320 4.6083 17 7 -0.8119 -8.6034 5.8133 18 6 -0.1383 -9.3669 6.6865 19 6 0.7587 -10.0967 5.9962 20 7 0.6185 -9.7535 4.6785 21 6 1.3906 -10.2881 3.5541 22 9 1.7800 -11.6014 3.8383 23 9 0.6020 -10.2751 2.3987 24 6 -0.4121 -3.5320 1.5660 25 6 0.2228 -2.3630 1.2138 26 1 -0.4850 0.8400 -0.0004 27 1 2.6868 -3.6946 -0.7352 28 1 1.5342 -5.7607 -0.0749 29 1 -0.5249 -6.7636 0.7115 30 1 -1.6957 -5.8219 1.6658 31 1 -0.7461 -8.8579 2.5087 32 1 -1.9165 -7.9155 3.4630 33 1 -0.2887 -9.3919 7.7556 34 1 1.4578 -10.8115 6.4045 35 1 2.2764 -9.6726 3.3964 36 1 -1.2816 -3.5003 2.2059 37 1 -0.1465 -1.4151 1.5760 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345483867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:51 Heat of formation + Delta-G solvation = -14.675841 kcal Electronic energy + Delta-G solvation = -23396.226342 eV Core-core repulsion = 19515.475955 eV Total energy + Delta-G solvation = -3880.750387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.81241 -47.92874 -42.32753 -37.67646 -34.05889 -33.79828 -32.04212 -31.28550 -29.36937 -27.84666 -27.35671 -26.15585 -23.97257 -21.83696 -21.08727 -20.96737 -20.09837 -18.65935 -18.46900 -17.65683 -17.38420 -16.14345 -15.61513 -15.35384 -15.09650 -14.83181 -14.62299 -14.42326 -14.31660 -14.03697 -13.93933 -13.88979 -13.51630 -13.15739 -12.90826 -12.57722 -12.51246 -12.03691 -11.97797 -11.66995 -11.11927 -11.01732 -10.75775 -10.48867 -10.36152 -10.25988 -9.86563 -9.70637 -9.47696 -9.17713 -8.66733 -7.55431 -7.37442 -7.32539 -6.86493 -4.43419 1.17402 1.68363 2.00910 2.61287 2.91827 3.01486 3.02130 3.03461 3.08089 3.13331 3.33054 3.65305 3.86105 4.00770 4.05738 4.29733 4.56210 4.91579 5.09269 5.33100 5.43828 5.53449 5.58948 5.73259 5.78146 6.11206 6.26189 6.32719 6.33386 6.55145 6.88130 6.97593 7.18496 7.26683 7.52571 7.72998 7.75042 7.96484 8.01373 8.19816 8.54501 8.79013 8.87397 10.07164 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.002425 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.488568 B =11541.564184 C =11877.838364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.080 0.920 9 C 0.118 3.882 10 C -0.229 4.229 11 C -0.066 4.066 12 C -0.213 4.213 13 C -0.002 4.002 14 S -0.254 6.254 15 C -0.038 4.038 16 C 0.256 3.744 17 N -0.466 5.466 18 C -0.013 4.013 19 C -0.045 4.045 20 N -0.512 5.512 21 C 0.485 3.515 22 F -0.181 7.181 23 F -0.174 7.174 24 C -0.076 4.076 25 C -0.167 4.167 26 H 0.283 0.717 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.090 0.910 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 -17.200 6.980 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.484 4.484 8 H 0.098 0.902 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.086 4.086 12 C -0.217 4.217 13 C -0.148 4.148 14 S -0.024 6.024 15 C -0.187 4.187 16 C -0.006 4.006 17 N -0.184 5.184 18 C -0.160 4.160 19 C -0.175 4.175 20 N -0.208 5.208 21 C 0.350 3.650 22 F -0.163 7.163 23 F -0.155 7.155 24 C -0.096 4.096 25 C -0.187 4.187 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.196 0.804 34 H 0.201 0.799 35 H 0.176 0.824 36 H 0.108 0.892 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.083 -16.263 7.686 18.020 hybrid contribution -0.056 -0.526 -0.931 1.071 sum 1.027 -16.789 6.755 18.127 Atomic orbital electron populations 1.69823 1.07673 1.29511 1.34004 1.25967 0.94761 1.01523 0.92122 0.86287 0.80821 0.80484 0.79136 1.19479 1.19905 1.18307 1.19675 0.98181 0.91280 1.39251 0.90219 1.17678 0.90862 0.92064 0.87968 1.20944 1.03917 0.92820 1.07182 1.20355 0.94660 0.96551 0.97037 1.18352 1.02430 0.91178 1.09725 1.22051 1.00467 0.98721 0.93594 1.87643 1.50785 1.26791 1.37139 1.21970 1.03790 0.99370 0.93560 1.22441 0.89739 0.92784 0.95659 1.70347 1.26437 1.23431 0.98180 1.22451 0.96391 0.97181 0.99940 1.22695 1.06549 1.06685 0.81560 1.46682 1.31550 1.34619 1.07941 1.21642 0.89065 0.80070 0.74236 1.93108 1.90739 1.39171 1.93255 1.93041 1.76962 1.96255 1.49251 1.20538 0.98244 0.92446 0.98385 1.21294 0.99351 0.96784 1.01273 0.90647 0.88822 0.89315 0.91035 0.90763 0.87564 0.87210 0.80411 0.79948 0.82399 0.89168 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.74 10.97 55.55 0.61 -19.13 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.12 29.60 -169.99 -5.03 13.09 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.45 -11.73 9.05 -37.74 -0.34 -12.07 16 8 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 9 C 0.12 3.06 5.57 -106.83 -0.60 2.46 16 10 C -0.23 -5.45 9.80 -38.88 -0.38 -5.83 16 11 C -0.07 -1.42 9.67 -39.66 -0.38 -1.80 16 12 C -0.21 -4.48 5.16 -104.33 -0.54 -5.02 16 13 C 0.00 -0.03 6.06 36.01 0.22 0.19 16 14 S -0.25 -4.17 21.70 -107.50 -2.33 -6.50 16 15 C -0.04 -0.50 6.14 36.00 0.22 -0.28 16 16 C 0.26 3.46 7.07 -155.41 -1.10 2.36 16 17 N -0.47 -6.82 11.25 -10.82 -0.12 -6.94 16 18 C -0.01 -0.15 11.87 -17.81 -0.21 -0.36 16 19 C -0.05 -0.44 11.16 -16.56 -0.18 -0.62 16 20 N -0.51 -5.65 3.14 -119.65 -0.38 -6.02 16 21 C 0.49 4.19 6.44 59.84 0.39 4.58 16 22 F -0.18 -1.53 17.04 2.25 0.04 -1.49 16 23 F -0.17 -1.73 14.50 2.25 0.03 -1.70 16 24 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 25 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 26 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 27 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 28 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 29 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 30 H 0.07 1.18 8.08 -51.92 -0.42 0.76 16 31 H 0.11 1.24 5.58 -51.92 -0.29 0.95 16 32 H 0.11 1.40 8.14 -51.92 -0.42 0.98 16 33 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.16 0.96 8.14 -51.92 -0.42 0.54 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.12 3.12 6.17 -52.49 -0.32 2.80 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -29.30 341.70 -9.71 -39.02 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -3.96 Total: 5.90 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -3.72 Total: -21.37 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.11 Total: -32.09 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.07 Total: -3.19 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: -4.17 SS G_CDS: -2.33 Total: -6.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.30 -9.71 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345483867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.340 kcal (2) G-P(sol) polarization free energy of solvation -29.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds