Wall clock time and date at job start Tue Mar 31 2020 14:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86803 * 119.99756 * 2 1 4 4 H 1.48496 * 109.46881 * 274.66277 * 3 2 1 5 5 H 1.48501 * 109.47093 * 34.66411 * 3 2 1 6 6 H 1.48495 * 109.46833 * 154.66480 * 3 2 1 7 7 C 1.39943 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99427 * 162.23204 * 7 2 1 9 9 C 1.41393 * 120.00494 * 342.23781 * 7 2 1 10 10 C 1.40707 * 120.24737 * 155.28843 * 9 7 2 11 11 C 1.37619 * 119.74674 * 180.02562 * 10 9 7 12 12 C 1.38633 * 120.24606 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.74544 * 179.97438 * 12 11 10 14 14 S 1.81404 * 109.47106 * 90.00435 * 13 12 11 15 15 C 1.81405 * 102.99866 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.47054 * 179.97438 * 15 14 13 17 17 N 1.30503 * 125.65194 * 89.97428 * 16 15 14 18 18 C 1.34126 * 109.25854 * 180.02562 * 17 16 15 19 19 C 1.34674 * 108.01867 * 359.97438 * 18 17 16 20 20 N 1.35044 * 125.64919 * 270.28514 * 16 15 14 21 21 C 1.46494 * 126.39835 * 0.02562 * 20 16 15 22 22 F 1.39903 * 109.47163 * 210.14141 * 21 20 16 23 23 F 1.39896 * 109.47517 * 330.14529 * 21 20 16 24 24 C 1.38636 * 120.50158 * 0.25300 * 12 11 10 25 25 C 1.37617 * 120.24983 * 359.44481 * 24 12 11 26 26 H 0.96994 * 119.99961 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.12690 * 359.97438 * 10 9 7 28 28 H 1.08006 * 119.87453 * 180.02562 * 11 10 9 29 29 H 1.08997 * 109.47218 * 330.00038 * 13 12 11 30 30 H 1.09004 * 109.47085 * 209.99720 * 13 12 11 31 31 H 1.09002 * 109.47104 * 59.99773 * 15 14 13 32 32 H 1.09003 * 109.46528 * 299.99686 * 15 14 13 33 33 H 1.07994 * 125.98899 * 179.97438 * 18 17 16 34 34 H 1.07994 * 126.58647 * 179.97438 * 19 18 17 35 35 H 1.09008 * 109.47242 * 90.14830 * 21 20 16 36 36 H 1.08001 * 119.87174 * 179.70738 * 24 12 11 37 37 H 1.07991 * 120.13195 * 180.27637 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4924 2.6222 0.7963 6 1 3.5856 1.4138 0.5991 7 6 2.0080 -1.2120 0.0005 8 1 3.0494 -1.2344 -0.2849 9 6 1.3516 -2.4072 0.3746 10 6 1.8218 -3.6493 -0.0900 11 6 1.1748 -4.8061 0.2801 12 6 0.0634 -4.7507 1.1070 13 6 -0.6369 -6.0245 1.5047 14 16 0.0959 -6.6646 3.0358 15 6 -0.8634 -8.1723 3.3480 16 6 -0.3662 -8.8320 4.6083 17 7 -0.8119 -8.6034 5.8133 18 6 -0.1383 -9.3669 6.6865 19 6 0.7587 -10.0967 5.9962 20 7 0.6185 -9.7535 4.6785 21 6 1.3906 -10.2881 3.5541 22 9 1.7800 -11.6014 3.8383 23 9 0.6020 -10.2751 2.3987 24 6 -0.4121 -3.5320 1.5660 25 6 0.2228 -2.3630 1.2138 26 1 -0.4850 0.8400 -0.0004 27 1 2.6868 -3.6946 -0.7352 28 1 1.5342 -5.7607 -0.0749 29 1 -0.5249 -6.7636 0.7115 30 1 -1.6957 -5.8219 1.6658 31 1 -0.7461 -8.8579 2.5087 32 1 -1.9165 -7.9155 3.4630 33 1 -0.2887 -9.3919 7.7556 34 1 1.4578 -10.8115 6.4045 35 1 2.2764 -9.6726 3.3964 36 1 -1.2816 -3.5003 2.2059 37 1 -0.1465 -1.4151 1.5760 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345483867.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:50 Heat of formation + Delta-G solvation = -28.293565 kcal Electronic energy + Delta-G solvation = -23396.816851 eV Core-core repulsion = 19515.475955 eV Total energy + Delta-G solvation = -3881.340896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.48941 -48.60632 -43.17887 -39.46907 -35.84416 -34.63877 -33.02512 -32.95795 -31.19059 -29.36280 -28.41861 -26.92882 -25.68362 -22.90627 -22.64547 -22.06339 -21.61480 -19.44343 -19.23411 -19.18209 -18.36558 -17.36436 -17.11424 -16.48539 -16.09350 -15.99322 -15.74035 -15.63040 -15.50880 -15.31938 -15.02776 -14.84564 -14.54047 -14.32484 -14.11022 -14.02328 -13.80926 -13.46987 -13.37433 -13.18833 -12.74909 -12.69003 -12.45220 -12.10759 -11.53401 -11.29139 -11.28092 -11.18300 -11.11332 -10.90543 -9.55165 -9.37085 -9.16567 -8.66677 -8.62512 -6.33973 0.06653 0.78495 0.98471 1.15152 1.25010 1.38563 1.48337 1.53784 1.79333 2.10636 2.20146 2.48868 2.75727 2.95168 3.09050 3.43791 3.55557 3.75538 4.07840 4.16522 4.16760 4.28549 4.46295 4.53110 4.57397 4.60725 4.72659 4.96693 5.05019 5.14295 5.34923 5.43726 5.58852 5.67602 5.69319 5.93427 6.09186 6.19120 6.36400 6.68420 6.85748 6.91982 7.01417 8.30340 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.002425 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.488568 B =11541.564184 C =11877.838364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.085 3.915 10 C -0.244 4.244 11 C -0.067 4.067 12 C -0.200 4.200 13 C 0.001 3.999 14 S -0.279 6.279 15 C -0.019 4.019 16 C 0.228 3.772 17 N -0.501 5.501 18 C -0.037 4.037 19 C -0.025 4.025 20 N -0.513 5.513 21 C 0.483 3.517 22 F -0.179 7.179 23 F -0.182 7.182 24 C -0.085 4.085 25 C -0.192 4.192 26 H 0.289 0.711 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.200 0.800 34 H 0.220 0.780 35 H 0.189 0.811 36 H 0.103 0.897 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 -19.438 7.573 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.525 4.525 8 H 0.095 0.905 9 C 0.082 3.918 10 C -0.264 4.264 11 C -0.087 4.087 12 C -0.204 4.204 13 C -0.146 4.146 14 S -0.049 6.049 15 C -0.167 4.167 16 C -0.034 4.034 17 N -0.221 5.221 18 C -0.183 4.183 19 C -0.156 4.156 20 N -0.208 5.208 21 C 0.349 3.651 22 F -0.160 7.160 23 F -0.163 7.163 24 C -0.105 4.105 25 C -0.212 4.212 26 H 0.100 0.900 27 H 0.118 0.882 28 H 0.139 0.861 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.217 0.783 34 H 0.237 0.763 35 H 0.205 0.795 36 H 0.121 0.879 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.695 -18.497 8.243 20.321 hybrid contribution -0.312 -0.178 -0.961 1.026 sum 1.383 -18.674 7.282 20.092 Atomic orbital electron populations 1.69875 1.09042 1.30681 1.35054 1.26786 0.95497 1.04601 0.91174 0.85205 0.79203 0.75952 0.79457 1.18544 1.19084 1.18273 1.19894 0.98401 0.92561 1.41684 0.90482 1.18010 0.91685 0.93241 0.88905 1.21169 1.04561 0.93077 1.07560 1.20690 0.94363 0.97132 0.96520 1.18730 1.01528 0.92306 1.07797 1.21975 1.00525 0.97314 0.94766 1.87643 1.51502 1.29451 1.36345 1.21888 1.02977 0.97450 0.94430 1.22318 0.91290 0.94392 0.95356 1.70271 1.27785 1.24741 0.99293 1.22958 0.96907 0.97497 1.00964 1.23327 1.05684 1.05705 0.80837 1.46875 1.30935 1.33978 1.09046 1.22088 0.89322 0.80470 0.73222 1.93116 1.90574 1.39159 1.93168 1.93016 1.77346 1.96295 1.49670 1.20766 0.98570 0.92596 0.98557 1.21246 1.00382 0.97006 1.02562 0.90029 0.88205 0.86067 0.88529 0.89651 0.85870 0.87069 0.78283 0.76324 0.79512 0.87886 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.92 10.97 21.83 0.24 -42.68 16 2 C 0.03 1.76 5.14 85.25 0.44 2.20 16 3 Si 0.98 38.05 29.60 68.60 2.03 40.08 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 7 C -0.50 -26.74 9.05 23.46 0.21 -26.53 16 8 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 9 C 0.08 4.57 5.57 -21.29 -0.12 4.45 16 10 C -0.24 -11.78 9.80 22.73 0.22 -11.56 16 11 C -0.07 -2.82 9.67 22.22 0.21 -2.61 16 12 C -0.20 -8.20 5.16 -19.67 -0.10 -8.30 16 13 C 0.00 0.03 6.06 71.24 0.43 0.46 16 14 S -0.28 -8.58 21.70 -56.49 -1.23 -9.81 16 15 C -0.02 -0.45 6.14 71.23 0.44 -0.01 16 16 C 0.23 5.70 7.07 138.13 0.98 6.68 16 17 N -0.50 -13.97 11.25 -188.14 -2.12 -16.09 16 18 C -0.04 -0.76 11.87 83.52 0.99 0.23 16 19 C -0.03 -0.41 11.16 83.09 0.93 0.52 16 20 N -0.51 -9.84 3.14 -532.46 -1.67 -11.51 16 21 C 0.48 6.79 6.44 127.77 0.82 7.62 16 22 F -0.18 -2.43 17.04 44.97 0.77 -1.67 16 23 F -0.18 -3.10 14.50 44.97 0.65 -2.44 16 24 C -0.08 -3.93 9.67 22.22 0.21 -3.72 16 25 C -0.19 -10.19 8.70 22.73 0.20 -9.99 16 26 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 27 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 28 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 29 H 0.10 2.58 8.08 -2.39 -0.02 2.56 16 30 H 0.08 2.51 8.08 -2.39 -0.02 2.49 16 31 H 0.12 2.52 5.58 -2.39 -0.01 2.51 16 32 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.20 2.85 8.06 -2.91 -0.02 2.82 16 34 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.19 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.10 5.52 6.17 -2.92 -0.02 5.51 16 Total: -1.00 -65.95 341.70 5.64 -60.30 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 1.10 Total: 24.38 kcal Atomic # 6 Polarization: -46.44 SS G_CDS: 5.87 Total: -40.57 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -3.55 Total: -70.28 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 1.42 Total: -4.11 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.23 Total: -9.81 kcal Total: -65.95 5.64 -60.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345483867.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.011 kcal (2) G-P(sol) polarization free energy of solvation -65.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds