Wall clock time and date at job start Tue Mar 31 2020 14:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99761 * 2 1 4 4 H 1.48495 * 109.47217 * 270.68659 * 3 2 1 5 5 H 1.48500 * 109.47357 * 30.68570 * 3 2 1 6 6 H 1.48505 * 109.46938 * 150.68300 * 3 2 1 7 7 C 1.37874 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00455 * 358.73405 * 7 2 1 9 9 C 1.50705 * 119.99734 * 178.71924 * 7 2 1 10 10 C 1.53002 * 115.54244 * 86.65126 * 9 7 2 11 11 O 1.45197 * 109.47525 * 64.76300 * 10 9 7 12 12 C 1.34226 * 117.00407 * 184.08923 * 11 10 9 13 13 O 1.20817 * 120.00001 * 5.25906 * 12 11 10 14 14 C 1.50702 * 120.00238 * 185.25676 * 12 11 10 15 15 C 1.52997 * 109.47327 * 176.45658 * 14 12 11 16 16 H 1.09003 * 109.47058 * 304.99699 * 15 14 12 17 17 O 1.42901 * 109.47347 * 64.99636 * 15 14 12 18 18 C 1.50693 * 109.47022 * 184.99967 * 15 14 12 19 19 C 1.38243 * 119.98906 * 100.00128 * 18 15 14 20 20 C 1.38210 * 120.01816 * 179.97438 * 19 18 15 21 21 C 1.38355 * 119.98834 * 0.02562 * 20 19 18 22 22 Cl 1.73591 * 120.01675 * 180.02562 * 21 20 19 23 23 C 1.38358 * 119.96959 * 0.28174 * 21 20 19 24 24 C 1.38214 * 119.98259 * 359.39539 * 23 21 20 25 25 C 1.52989 * 117.50299 * 232.31907 * 9 7 2 26 26 C 1.52991 * 117.50332 * 300.98251 * 9 7 2 27 27 H 0.97000 * 120.00347 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47362 * 304.76070 * 10 9 7 29 29 H 1.09003 * 109.46790 * 184.76116 * 10 9 7 30 30 H 1.09000 * 109.46897 * 56.45174 * 14 12 11 31 31 H 1.09002 * 109.47068 * 296.45769 * 14 12 11 32 32 H 0.96706 * 113.99338 * 60.00406 * 17 15 14 33 33 H 1.08000 * 119.99233 * 359.97438 * 19 18 15 34 34 H 1.08004 * 120.01107 * 180.02562 * 20 19 18 35 35 H 1.07992 * 120.00904 * 179.72691 * 23 21 20 36 36 H 1.08002 * 119.99346 * 180.32196 * 24 23 21 37 37 H 1.09005 * 117.50369 * 215.00430 * 25 9 7 38 38 H 1.09004 * 117.50089 * 0.02736 * 25 9 7 39 39 H 1.09001 * 117.49904 * 359.97438 * 26 9 7 40 40 H 1.09008 * 117.50020 * 144.96668 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4820 2.0548 -1.3999 5 1 1.4539 2.6484 0.7145 6 1 3.5538 1.4360 0.6856 7 6 2.0045 -1.1941 0.0005 8 1 1.4647 -2.1292 0.0216 9 6 3.5113 -1.1942 -0.0286 10 6 4.1975 -1.0976 1.3354 11 8 3.8945 -2.2846 2.1149 12 6 4.3539 -2.3195 3.3756 13 8 4.9052 -1.3522 3.8446 14 6 4.1819 -3.5652 4.2061 15 6 4.8660 -3.3734 5.5611 16 1 5.9084 -3.0951 5.4057 17 8 4.2003 -2.3391 6.2886 18 6 4.8007 -4.6597 6.3433 19 6 5.8996 -5.4974 6.3886 20 6 5.8405 -6.6771 7.1063 21 6 4.6812 -7.0199 7.7791 22 17 4.6065 -8.5011 8.6813 23 6 3.5797 -6.1843 7.7282 24 6 3.6422 -5.0017 7.0156 25 6 4.1969 -2.0362 -1.1064 26 6 4.1950 -0.5093 -1.2135 27 1 -0.4851 0.8400 -0.0004 28 1 3.8358 -0.2148 1.8625 29 1 5.2757 -1.0206 1.1950 30 1 4.6323 -4.4121 3.6883 31 1 3.1197 -3.7561 4.3591 32 1 3.2665 -2.5198 6.4634 33 1 6.8044 -5.2299 5.8631 34 1 6.6992 -7.3312 7.1420 35 1 2.6730 -6.4535 8.2495 36 1 2.7842 -4.3467 6.9801 37 1 5.1371 -2.5214 -0.8438 38 1 3.5583 -2.5898 -1.7947 39 1 3.5551 -0.0589 -1.9723 40 1 5.1337 0.0105 -1.0213 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346740346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:23 Heat of formation + Delta-G solvation = -113.584040 kcal Electronic energy + Delta-G solvation = -24257.026902 eV Core-core repulsion = 20448.738592 eV Total energy + Delta-G solvation = -3808.288310 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57953 -40.59536 -38.93082 -38.13530 -37.24048 -36.82754 -34.26510 -33.20559 -32.03206 -31.02800 -28.88848 -27.38932 -25.60226 -23.85583 -23.36553 -22.43941 -21.57761 -21.03367 -19.05976 -18.69081 -18.20049 -17.72204 -17.52306 -16.98648 -16.77049 -16.42006 -16.06523 -15.49476 -15.34406 -15.10831 -14.82114 -14.55345 -14.46425 -14.40424 -14.01509 -13.75582 -13.34643 -13.08082 -13.00461 -12.69833 -12.64494 -12.48344 -12.27131 -12.07168 -12.01425 -11.77293 -11.71432 -11.65008 -11.43175 -11.20360 -10.92826 -10.66330 -10.37248 -10.03566 -9.63863 -8.31914 -6.38679 0.03698 0.29904 1.13589 1.28488 1.31627 1.36150 1.45489 1.76438 2.33215 2.56961 3.01583 3.15372 3.45516 3.51993 3.63310 3.75708 3.92735 3.97691 4.02699 4.15969 4.23541 4.32713 4.33383 4.37629 4.41359 4.57391 4.65891 4.66779 4.79581 4.82560 4.97897 5.02802 5.16341 5.22383 5.22869 5.45659 5.47715 5.65544 5.68458 5.76351 6.28844 6.69060 6.72693 6.86567 7.30196 8.83695 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.002391 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.232975 B =11706.368564 C =11816.625490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.021 3.979 3 Si 0.932 3.068 4 H -0.259 1.259 5 H -0.298 1.298 6 H -0.242 1.242 7 C -0.480 4.480 8 H 0.035 0.965 9 C -0.040 4.040 10 C 0.113 3.887 11 O -0.351 6.351 12 C 0.449 3.551 13 O -0.535 6.535 14 C -0.136 4.136 15 C 0.170 3.830 16 H 0.110 0.890 17 O -0.561 6.561 18 C -0.115 4.115 19 C -0.096 4.096 20 C -0.113 4.113 21 C -0.045 4.045 22 Cl -0.074 7.074 23 C -0.113 4.113 24 C -0.100 4.100 25 C -0.152 4.152 26 C -0.182 4.182 27 H 0.266 0.734 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.384 0.616 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.913 -14.251 14.834 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.176 4.176 3 Si 0.757 3.243 4 H -0.184 1.184 5 H -0.225 1.225 6 H -0.166 1.166 7 C -0.518 4.518 8 H 0.054 0.946 9 C -0.041 4.041 10 C 0.040 3.960 11 O -0.267 6.267 12 C 0.294 3.706 13 O -0.425 6.425 14 C -0.173 4.173 15 C 0.111 3.889 16 H 0.127 0.873 17 O -0.368 6.368 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.131 4.131 21 C -0.071 4.071 22 Cl -0.045 7.045 23 C -0.132 4.132 24 C -0.119 4.119 25 C -0.189 4.189 26 C -0.219 4.219 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.157 0.843 31 H 0.143 0.857 32 H 0.234 0.766 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 13.477 -13.692 14.986 24.366 hybrid contribution -0.920 0.600 0.025 1.099 sum 12.557 -13.092 15.011 23.546 Atomic orbital electron populations 1.70025 1.08134 1.28042 1.52366 1.25801 0.95285 1.02662 0.93895 0.85990 0.79896 0.78949 0.79473 1.18376 1.22517 1.16572 1.20365 0.88791 0.92773 1.49882 0.94628 1.19233 0.93107 1.05105 0.86622 1.22762 0.97889 0.84593 0.90788 1.86542 1.71055 1.43947 1.25175 1.24328 0.74494 0.90693 0.81097 1.90651 1.41439 1.38038 1.72379 1.22288 1.06348 0.93755 0.94939 1.20494 0.97767 0.84201 0.86443 0.87263 1.86744 1.28563 1.44941 1.76558 1.20515 0.95186 0.96557 0.99305 1.21228 0.98856 0.93103 0.98233 1.21271 0.97367 0.97683 0.96804 1.21189 0.96850 0.89900 0.99198 1.98378 1.98595 1.33859 1.73637 1.21233 0.98252 0.93832 0.99854 1.21130 0.98165 0.96360 0.96196 1.22876 1.01632 0.92387 1.01981 1.23077 1.01818 0.96385 1.00652 0.92498 0.93884 0.91137 0.84297 0.85675 0.76631 0.82978 0.83218 0.83490 0.83319 0.87470 0.89764 0.89822 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16 2 C 0.02 1.22 5.47 84.65 0.46 1.69 16 3 Si 0.93 44.24 24.88 68.60 1.71 45.95 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.24 -10.70 5.74 99.48 0.57 -10.13 16 7 C -0.48 -27.06 9.35 25.60 0.24 -26.82 16 8 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 9 C -0.04 -1.79 1.06 -52.93 -0.06 -1.84 16 10 C 0.11 4.78 4.99 71.98 0.36 5.14 16 11 O -0.35 -13.99 10.15 -51.38 -0.52 -14.51 16 12 C 0.45 15.08 7.85 71.24 0.56 15.64 16 13 O -0.54 -20.97 15.05 27.38 0.41 -20.55 16 14 C -0.14 -2.88 5.47 29.85 0.16 -2.72 16 15 C 0.17 3.35 2.76 29.84 0.08 3.43 16 16 H 0.11 2.29 7.87 -2.39 -0.02 2.27 16 17 O -0.56 -13.34 12.34 -133.85 -1.65 -14.99 16 18 C -0.12 -1.79 4.97 -19.86 -0.10 -1.89 16 19 C -0.10 -1.31 9.67 22.26 0.22 -1.09 16 20 C -0.11 -1.53 9.83 22.29 0.22 -1.31 16 21 C -0.04 -0.68 6.32 22.33 0.14 -0.54 16 22 Cl -0.07 -1.10 28.96 -2.72 -0.08 -1.18 16 23 C -0.11 -1.61 9.83 22.29 0.22 -1.39 16 24 C -0.10 -1.41 9.32 22.27 0.21 -1.21 16 25 C -0.15 -5.62 9.96 30.61 0.30 -5.32 16 26 C -0.18 -6.99 7.62 30.61 0.23 -6.76 16 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.04 2.00 6.46 -2.39 -0.02 1.99 16 29 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 30 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.13 2.32 8.14 -2.39 -0.02 2.31 16 32 H 0.38 6.29 7.50 -74.05 -0.56 5.74 16 33 H 0.15 1.48 8.04 -2.91 -0.02 1.46 16 34 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.15 1.52 6.78 -2.91 -0.02 1.50 16 37 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 38 H 0.08 3.20 8.14 -2.39 -0.02 3.19 16 39 H 0.08 3.39 7.29 -2.39 -0.02 3.37 16 40 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 Total: -1.00 -73.75 355.00 3.80 -69.95 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.38 Total: 18.75 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 3.25 Total: -24.99 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.30 Total: -58.43 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -1.76 Total: -50.06 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.71 Total: 45.95 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -73.75 3.80 -69.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346740346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.631 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds