Wall clock time and date at job start Tue Mar 31 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99757 * 2 1 4 4 H 1.48504 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47190 * 300.00041 * 3 2 1 6 6 H 1.48496 * 109.47249 * 60.00135 * 3 2 1 7 7 C 1.37878 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99916 * 186.11169 * 7 2 1 9 9 C 1.50701 * 119.99626 * 6.39360 * 7 2 1 10 10 C 1.52999 * 115.54913 * 274.88524 * 9 7 2 11 11 O 1.45207 * 109.47305 * 294.89081 * 10 9 7 12 12 C 1.34224 * 117.00145 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99958 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47086 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.47436 * 54.99640 * 15 14 12 17 17 O 1.42900 * 109.46921 * 294.99586 * 15 14 12 18 18 C 1.50700 * 109.47226 * 174.99682 * 15 14 12 19 19 C 1.38244 * 119.98672 * 84.72579 * 18 15 14 20 20 C 1.38212 * 120.01399 * 179.72617 * 19 18 15 21 21 C 1.38353 * 119.98522 * 0.54868 * 20 19 18 22 22 Cl 1.73600 * 120.01210 * 179.74667 * 21 20 19 23 23 C 1.38350 * 119.97431 * 359.72377 * 21 20 19 24 24 C 1.38218 * 119.98784 * 0.02562 * 23 21 20 25 25 C 1.53006 * 117.49654 * 129.22379 * 9 7 2 26 26 C 1.52997 * 117.50324 * 60.56017 * 9 7 2 27 27 H 0.96995 * 120.00267 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47042 * 54.89004 * 10 9 7 29 29 H 1.08998 * 109.47114 * 174.89243 * 10 9 7 30 30 H 1.09002 * 109.47048 * 299.99593 * 14 12 11 31 31 H 1.08995 * 109.47282 * 60.00032 * 14 12 11 32 32 H 0.96687 * 114.00244 * 299.99978 * 17 15 14 33 33 H 1.08002 * 119.99021 * 359.97438 * 19 18 15 34 34 H 1.07999 * 120.00917 * 180.27131 * 20 19 18 35 35 H 1.08001 * 120.00926 * 179.97438 * 23 21 20 36 36 H 1.08001 * 119.99693 * 180.02562 * 24 23 21 37 37 H 1.08998 * 117.49874 * 359.97438 * 25 9 7 38 38 H 1.08995 * 117.49819 * 145.01858 * 25 9 7 39 39 H 1.08998 * 117.50062 * 214.97901 * 26 9 7 40 40 H 1.09000 * 117.49878 * 359.97404 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0799 -1.1967 0.0990 9 6 1.2580 -2.4950 -0.1465 10 6 0.6970 -3.0829 1.1499 11 8 1.7929 -3.4500 2.0290 12 6 1.4686 -3.9840 3.2169 13 8 0.3074 -4.1401 3.5123 14 6 2.5526 -4.3890 4.1822 15 6 1.9179 -4.9656 5.4493 16 1 1.2477 -5.7822 5.1808 17 8 1.1781 -3.9428 6.1192 18 6 2.9995 -5.4830 6.3623 19 6 3.6426 -4.6200 7.2299 20 6 4.6308 -5.0950 8.0715 21 6 4.9841 -6.4323 8.0374 22 17 6.2297 -7.0283 9.0895 23 6 4.3440 -7.2943 7.1649 24 6 3.3524 -6.8191 6.3275 25 6 1.7504 -3.4763 -1.2121 26 6 0.4462 -2.7040 -1.4263 27 1 -0.4850 0.8400 0.0004 28 1 0.0685 -2.3413 1.6430 29 1 0.1033 -3.9677 0.9205 30 1 3.1882 -5.1437 3.7190 31 1 3.1533 -3.5170 4.4407 32 1 1.7121 -3.1830 6.3880 33 1 3.3701 -3.5752 7.2530 34 1 5.1301 -4.4217 8.7524 35 1 4.6197 -8.3382 7.1376 36 1 2.8524 -7.4920 5.6466 37 1 2.6140 -3.1808 -1.8079 38 1 1.6742 -4.5406 -0.9898 39 1 -0.4875 -3.2606 -1.3448 40 1 0.4516 -1.9004 -2.1627 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346740347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:26 Heat of formation + Delta-G solvation = -99.053390 kcal Electronic energy + Delta-G solvation = -24188.022665 eV Core-core repulsion = 20380.364451 eV Total energy + Delta-G solvation = -3807.658214 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36570 -39.53913 -37.53689 -36.77523 -36.37469 -35.15685 -32.34391 -31.98492 -31.40801 -30.09652 -26.92346 -25.40643 -24.54714 -23.23915 -21.60765 -21.19191 -20.25591 -19.27640 -18.17052 -17.01989 -16.75657 -16.58360 -16.11320 -15.66918 -15.39369 -15.05576 -14.68925 -14.38915 -14.32255 -13.91771 -13.83158 -13.69196 -13.12705 -12.65514 -12.45051 -12.19473 -11.94273 -11.83209 -11.67669 -11.63318 -11.26157 -11.13081 -11.02740 -10.86724 -10.54668 -10.42088 -10.31323 -10.00960 -9.84623 -9.56591 -9.44183 -8.96799 -8.84132 -8.49884 -8.23286 -6.09427 -4.14794 0.69183 0.89252 1.75710 2.76339 3.09523 3.25275 3.33928 3.34883 3.37968 4.24231 4.34046 4.36666 4.37361 4.47541 4.64959 4.88426 4.92773 5.05701 5.19335 5.22059 5.26186 5.43840 5.49251 5.56981 5.66244 5.79458 5.82509 5.97056 6.14246 6.22505 6.31539 6.36347 6.51562 6.63979 6.70835 7.00776 7.26420 7.34265 7.45757 7.47574 7.83980 8.33873 8.45021 8.87155 9.51165 11.00030 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.002444 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.610357 B =11451.629658 C =11951.941699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.068 3.932 3 Si 0.892 3.108 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.117 3.883 11 O -0.340 6.340 12 C 0.452 3.548 13 O -0.508 6.508 14 C -0.145 4.145 15 C 0.162 3.838 16 H 0.118 0.882 17 O -0.536 6.536 18 C -0.108 4.108 19 C -0.097 4.097 20 C -0.106 4.106 21 C -0.036 4.036 22 Cl -0.073 7.073 23 C -0.108 4.108 24 C -0.095 4.095 25 C -0.205 4.205 26 C -0.146 4.146 27 H 0.261 0.739 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.370 0.630 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.261 -12.806 15.025 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.527 4.527 8 H 0.082 0.918 9 C 0.037 3.963 10 C 0.044 3.956 11 O -0.256 6.256 12 C 0.294 3.706 13 O -0.397 6.397 14 C -0.183 4.183 15 C 0.102 3.898 16 H 0.136 0.864 17 O -0.341 6.341 18 C -0.109 4.109 19 C -0.116 4.116 20 C -0.125 4.125 21 C -0.062 4.062 22 Cl -0.044 7.044 23 C -0.126 4.126 24 C -0.114 4.114 25 C -0.243 4.243 26 C -0.184 4.184 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.218 0.782 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.351 -13.165 15.050 21.669 hybrid contribution 0.893 1.245 0.145 1.539 sum 9.244 -11.920 15.195 21.411 Atomic orbital electron populations 1.70007 1.05909 1.26636 1.49182 1.25025 0.94859 0.99108 0.94523 0.86535 0.80277 0.83591 0.77642 1.19592 1.20910 1.20996 1.20419 0.93085 0.88338 1.50877 0.91846 1.18790 0.98834 0.94190 0.84509 1.22884 0.85826 0.96964 0.89958 1.86507 1.41658 1.71169 1.26220 1.23195 0.89650 0.75295 0.82466 1.90666 1.21153 1.51364 1.76481 1.22102 0.97450 1.04250 0.94513 1.20605 0.90466 0.91332 0.87368 0.86388 1.86788 1.38209 1.31143 1.77966 1.20711 0.97817 0.94399 0.97955 1.20904 0.95249 1.00100 0.95304 1.21034 0.97943 0.93706 0.99799 1.20980 0.94488 0.94457 0.96311 1.98377 1.52258 1.88410 1.65359 1.21063 0.96282 0.99944 0.95360 1.21007 0.96801 0.94956 0.98587 1.23005 0.98401 0.95686 1.07163 1.22549 0.92486 1.01276 1.02056 0.92925 0.90551 0.94389 0.87025 0.87397 0.78232 0.84878 0.84708 0.84712 0.84588 0.90077 0.91564 0.91626 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.71 12.93 55.43 0.72 -23.99 16 2 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 3 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.49 -13.20 8.77 -34.44 -0.30 -13.50 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.04 0.92 1.61 -155.66 -0.25 0.67 16 10 C 0.12 2.75 5.29 37.16 0.20 2.95 16 11 O -0.34 -7.23 10.16 -39.24 -0.40 -7.63 16 12 C 0.45 8.16 7.84 36.00 0.28 8.45 16 13 O -0.51 -10.59 15.17 -24.06 -0.36 -10.96 16 14 C -0.15 -1.75 5.48 -27.88 -0.15 -1.90 16 15 C 0.16 1.79 2.76 -27.88 -0.08 1.72 16 16 H 0.12 1.39 7.87 -51.93 -0.41 0.98 16 17 O -0.54 -6.84 12.37 -49.68 -0.61 -7.46 16 18 C -0.11 -0.98 5.00 -104.62 -0.52 -1.50 16 19 C -0.10 -0.80 9.33 -39.59 -0.37 -1.16 16 20 C -0.11 -0.86 9.83 -39.55 -0.39 -1.25 16 21 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 22 Cl -0.07 -0.60 28.96 -51.86 -1.50 -2.10 16 23 C -0.11 -0.86 9.83 -39.55 -0.39 -1.25 16 24 C -0.10 -0.78 9.68 -39.59 -0.38 -1.16 16 25 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 26 C -0.15 -3.37 9.43 -26.69 -0.25 -3.62 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.08 2.00 8.13 -51.93 -0.42 1.58 16 29 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 30 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.37 3.32 7.40 45.56 0.34 3.65 16 33 H 0.13 0.83 6.62 -52.49 -0.35 0.48 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -31.94 364.20 -9.53 -41.47 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -4.61 Total: 4.45 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -3.22 Total: -15.05 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.72 Total: -23.99 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -1.38 Total: -26.04 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.94 -9.53 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346740347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.588 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds