Wall clock time and date at job start Tue Mar 31 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99757 * 2 1 4 4 H 1.48504 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47190 * 300.00041 * 3 2 1 6 6 H 1.48496 * 109.47249 * 60.00135 * 3 2 1 7 7 C 1.37878 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99916 * 186.11169 * 7 2 1 9 9 C 1.50701 * 119.99626 * 6.39360 * 7 2 1 10 10 C 1.52999 * 115.54913 * 274.88524 * 9 7 2 11 11 O 1.45207 * 109.47305 * 294.89081 * 10 9 7 12 12 C 1.34224 * 117.00145 * 179.97438 * 11 10 9 13 13 O 1.20829 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99958 * 180.02562 * 12 11 10 15 15 C 1.53000 * 109.47086 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.47436 * 54.99640 * 15 14 12 17 17 O 1.42900 * 109.46921 * 294.99586 * 15 14 12 18 18 C 1.50700 * 109.47226 * 174.99682 * 15 14 12 19 19 C 1.38244 * 119.98672 * 84.72579 * 18 15 14 20 20 C 1.38212 * 120.01399 * 179.72617 * 19 18 15 21 21 C 1.38353 * 119.98522 * 0.54868 * 20 19 18 22 22 Cl 1.73600 * 120.01210 * 179.74667 * 21 20 19 23 23 C 1.38350 * 119.97431 * 359.72377 * 21 20 19 24 24 C 1.38218 * 119.98784 * 0.02562 * 23 21 20 25 25 C 1.53006 * 117.49654 * 129.22379 * 9 7 2 26 26 C 1.52997 * 117.50324 * 60.56017 * 9 7 2 27 27 H 0.96995 * 120.00267 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47042 * 54.89004 * 10 9 7 29 29 H 1.08998 * 109.47114 * 174.89243 * 10 9 7 30 30 H 1.09002 * 109.47048 * 299.99593 * 14 12 11 31 31 H 1.08995 * 109.47282 * 60.00032 * 14 12 11 32 32 H 0.96687 * 114.00244 * 299.99978 * 17 15 14 33 33 H 1.08002 * 119.99021 * 359.97438 * 19 18 15 34 34 H 1.07999 * 120.00917 * 180.27131 * 20 19 18 35 35 H 1.08001 * 120.00926 * 179.97438 * 23 21 20 36 36 H 1.08001 * 119.99693 * 180.02562 * 24 23 21 37 37 H 1.08998 * 117.49874 * 359.97438 * 25 9 7 38 38 H 1.08995 * 117.49819 * 145.01858 * 25 9 7 39 39 H 1.08998 * 117.50062 * 214.97901 * 26 9 7 40 40 H 1.09000 * 117.49878 * 359.97404 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0799 -1.1967 0.0990 9 6 1.2580 -2.4950 -0.1465 10 6 0.6970 -3.0829 1.1499 11 8 1.7929 -3.4500 2.0290 12 6 1.4686 -3.9840 3.2169 13 8 0.3074 -4.1401 3.5123 14 6 2.5526 -4.3890 4.1822 15 6 1.9179 -4.9656 5.4493 16 1 1.2477 -5.7822 5.1808 17 8 1.1781 -3.9428 6.1192 18 6 2.9995 -5.4830 6.3623 19 6 3.6426 -4.6200 7.2299 20 6 4.6308 -5.0950 8.0715 21 6 4.9841 -6.4323 8.0374 22 17 6.2297 -7.0283 9.0895 23 6 4.3440 -7.2943 7.1649 24 6 3.3524 -6.8191 6.3275 25 6 1.7504 -3.4763 -1.2121 26 6 0.4462 -2.7040 -1.4263 27 1 -0.4850 0.8400 0.0004 28 1 0.0685 -2.3413 1.6430 29 1 0.1033 -3.9677 0.9205 30 1 3.1882 -5.1437 3.7190 31 1 3.1533 -3.5170 4.4407 32 1 1.7121 -3.1830 6.3880 33 1 3.3701 -3.5752 7.2530 34 1 5.1301 -4.4217 8.7524 35 1 4.6197 -8.3382 7.1376 36 1 2.8524 -7.4920 5.6466 37 1 2.6140 -3.1808 -1.8079 38 1 1.6742 -4.5406 -0.9898 39 1 -0.4875 -3.2606 -1.3448 40 1 0.4516 -1.9004 -2.1627 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346740347.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:26 Heat of formation + Delta-G solvation = -116.321881 kcal Electronic energy + Delta-G solvation = -24188.771483 eV Core-core repulsion = 20380.364451 eV Total energy + Delta-G solvation = -3808.407032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.096 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.53158 -40.57310 -38.74455 -38.07265 -37.21574 -36.76958 -34.02662 -33.21053 -32.01112 -31.00739 -28.62076 -27.32971 -25.58945 -23.83818 -23.01566 -22.39984 -21.54813 -21.18218 -19.04378 -18.50378 -18.15471 -17.62035 -17.43955 -16.87264 -16.65277 -16.41854 -16.06052 -15.66510 -15.24541 -15.08733 -14.84055 -14.44702 -14.42238 -14.01500 -13.76216 -13.53784 -13.30697 -12.97738 -12.91567 -12.79922 -12.63008 -12.48518 -12.36618 -12.09071 -12.02882 -11.76627 -11.65450 -11.61968 -11.40218 -11.19993 -10.76938 -10.49788 -10.08420 -10.03034 -9.62568 -8.14065 -6.25415 0.04444 0.30425 1.13990 1.32868 1.40682 1.43549 1.54716 1.83944 2.42356 2.57977 3.15096 3.36798 3.44531 3.56421 3.65198 3.77126 3.93881 4.04804 4.15478 4.18987 4.33889 4.37292 4.41347 4.49440 4.58720 4.66557 4.66824 4.80233 4.87674 4.96565 4.98499 5.16994 5.18528 5.23311 5.47319 5.48560 5.58224 5.74522 5.76205 5.78828 6.35739 6.73746 6.80474 6.90856 7.43578 8.95072 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018123 B = 0.002444 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.610357 B =11451.629658 C =11951.941699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.057 0.943 9 C 0.004 3.996 10 C 0.130 3.870 11 O -0.351 6.351 12 C 0.447 3.553 13 O -0.540 6.540 14 C -0.133 4.133 15 C 0.169 3.831 16 H 0.107 0.893 17 O -0.562 6.562 18 C -0.114 4.114 19 C -0.100 4.100 20 C -0.112 4.112 21 C -0.045 4.045 22 Cl -0.073 7.073 23 C -0.112 4.112 24 C -0.098 4.098 25 C -0.176 4.176 26 C -0.150 4.150 27 H 0.261 0.739 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.384 0.616 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.030 -13.496 15.624 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.188 1.188 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.003 3.997 10 C 0.056 3.944 11 O -0.267 6.267 12 C 0.292 3.708 13 O -0.430 6.430 14 C -0.171 4.171 15 C 0.110 3.890 16 H 0.125 0.875 17 O -0.369 6.369 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.072 4.072 22 Cl -0.045 7.045 23 C -0.131 4.131 24 C -0.116 4.116 25 C -0.213 4.213 26 C -0.188 4.188 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.234 0.766 33 H 0.168 0.832 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.147 -13.862 15.658 23.244 hybrid contribution 0.353 1.404 0.024 1.447 sum 10.499 -12.459 15.681 22.613 Atomic orbital electron populations 1.70118 1.07219 1.27261 1.50266 1.25750 0.95597 1.02248 0.94312 0.85578 0.79368 0.79652 0.77534 1.18759 1.20575 1.20879 1.20672 0.92961 0.89777 1.50627 0.92521 1.18896 1.00412 0.94810 0.85546 1.22445 0.86046 0.96110 0.89800 1.86515 1.40811 1.71844 1.27495 1.24386 0.90808 0.73793 0.81855 1.90651 1.23062 1.52553 1.76754 1.22268 0.95728 1.05775 0.93283 1.20489 0.90686 0.90636 0.87190 0.87504 1.86747 1.39748 1.32217 1.78205 1.20510 0.97695 0.94978 0.98296 1.21120 0.94914 1.00936 0.94823 1.21232 0.97978 0.93861 1.00001 1.21182 0.94605 0.94899 0.96471 1.98378 1.52279 1.88423 1.65381 1.21262 0.96061 1.00717 0.95042 1.21214 0.96710 0.94894 0.98749 1.23016 0.97400 0.96416 1.04473 1.22489 0.93906 1.01429 1.00950 0.93035 0.94433 0.93547 0.84274 0.85430 0.76586 0.83233 0.83391 0.83249 0.83098 0.89537 0.88998 0.90527 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.04 12.93 21.45 0.28 -51.76 16 2 C 0.02 1.15 5.39 84.65 0.46 1.60 16 3 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 4 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.50 -27.19 8.77 25.60 0.22 -26.97 16 8 H 0.06 3.06 7.82 -2.91 -0.02 3.03 16 9 C 0.00 0.19 1.61 -52.93 -0.08 0.10 16 10 C 0.13 6.19 5.29 71.98 0.38 6.57 16 11 O -0.35 -14.80 10.16 -51.36 -0.52 -15.32 16 12 C 0.45 15.91 7.84 71.24 0.56 16.47 16 13 O -0.54 -22.73 15.17 27.03 0.41 -22.32 16 14 C -0.13 -2.94 5.48 29.85 0.16 -2.77 16 15 C 0.17 3.50 2.76 29.85 0.08 3.59 16 16 H 0.11 2.43 7.87 -2.38 -0.02 2.41 16 17 O -0.56 -13.84 12.37 -135.17 -1.67 -15.51 16 18 C -0.11 -1.83 5.00 -19.86 -0.10 -1.93 16 19 C -0.10 -1.41 9.33 22.26 0.21 -1.20 16 20 C -0.11 -1.58 9.83 22.29 0.22 -1.36 16 21 C -0.05 -0.68 6.32 22.32 0.14 -0.54 16 22 Cl -0.07 -1.09 28.96 -2.72 -0.08 -1.17 16 23 C -0.11 -1.56 9.83 22.29 0.22 -1.34 16 24 C -0.10 -1.38 9.68 22.27 0.22 -1.17 16 25 C -0.18 -7.28 9.96 30.62 0.30 -6.97 16 26 C -0.15 -6.89 9.43 30.62 0.29 -6.60 16 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.04 2.04 8.13 -2.39 -0.02 2.02 16 29 H 0.05 2.08 8.08 -2.39 -0.02 2.06 16 30 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.38 6.40 7.40 -74.07 -0.55 5.85 16 33 H 0.15 1.50 6.62 -2.91 -0.02 1.49 16 34 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 36 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 38 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.07 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -69.13 364.20 4.23 -64.90 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.52 Total: 18.93 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 3.28 Total: -22.53 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.28 Total: -51.76 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -1.78 Total: -53.15 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -69.13 4.23 -64.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346740347.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.424 kcal (2) G-P(sol) polarization free energy of solvation -69.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds