Wall clock time and date at job start Tue Mar 31 2020 13:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47433 * 2 1 4 4 C 1.53003 * 109.47447 * 120.01040 * 2 1 3 5 5 C 1.50699 * 109.47043 * 184.99859 * 4 2 1 6 6 C 1.38247 * 119.92596 * 269.97147 * 5 4 2 7 7 C 1.38240 * 120.14459 * 179.79586 * 6 5 4 8 8 C 1.38552 * 120.02633 * 0.42901 * 7 6 5 9 9 C 1.39265 * 119.82706 * 359.57585 * 8 7 6 10 10 C 1.38231 * 119.93007 * 89.99936 * 5 4 2 11 11 O 1.36496 * 108.64230 * 180.24572 * 9 8 7 12 12 C 1.43981 * 105.48444 * 342.72036 * 11 9 8 13 13 O 1.36505 * 131.53353 * 179.87931 * 8 7 6 14 14 O 1.45206 * 109.46899 * 240.00859 * 2 1 3 15 15 C 1.34220 * 117.00397 * 89.99721 * 14 2 1 16 16 O 1.20831 * 120.00037 * 0.02562 * 15 14 2 17 17 C 1.50697 * 120.00283 * 180.02562 * 15 14 2 18 18 S 1.80999 * 109.47264 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00280 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99532 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00205 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00128 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46966 * 90.00197 * 23 21 19 25 25 H 1.48494 * 109.46992 * 210.00590 * 23 21 19 26 26 H 1.48504 * 109.46953 * 330.00626 * 23 21 19 27 27 H 1.09007 * 109.46670 * 299.99639 * 1 2 3 28 28 H 1.08996 * 109.47279 * 59.99266 * 1 2 3 29 29 H 1.08997 * 109.47433 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47128 * 64.99456 * 4 2 1 31 31 H 1.09001 * 109.46522 * 304.99072 * 4 2 1 32 32 H 1.07994 * 119.93290 * 0.04934 * 6 5 4 33 33 H 1.07997 * 119.99327 * 180.33354 * 7 6 5 34 34 H 1.08003 * 119.98943 * 359.97438 * 10 5 4 35 35 H 1.09007 * 110.56955 * 268.54960 * 12 11 9 36 36 H 1.09003 * 110.57719 * 145.67764 * 12 11 9 37 37 H 1.09003 * 109.46984 * 299.99997 * 17 15 14 38 38 H 1.08999 * 109.47258 * 60.00372 * 17 15 14 39 39 H 0.97002 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7215 1.2491 5 6 3.5420 -0.6151 1.3125 6 6 4.3277 -1.5829 0.7149 7 6 5.7059 -1.4876 0.7666 8 6 6.3031 -0.4254 1.4260 9 6 5.5115 0.5495 2.0280 10 6 4.1309 0.4496 1.9685 11 8 6.3276 1.4817 2.6008 12 6 7.6201 0.8545 2.6961 13 8 7.6153 -0.1040 1.6217 14 8 2.0139 -0.6843 -1.1857 15 6 2.2170 0.0642 -2.2812 16 8 1.9981 1.2521 -2.2503 17 6 2.7180 -0.5769 -3.5496 18 16 2.8899 0.6846 -4.8361 19 6 3.4733 -0.3125 -6.1666 20 1 3.6170 -1.3734 -6.0236 21 6 3.7483 0.2653 -7.3982 22 7 3.5737 1.5583 -7.5723 23 14 4.3676 -0.7917 -8.8084 24 1 3.2117 -1.3055 -9.5865 25 1 5.2370 0.0240 -9.6937 26 1 5.1462 -1.9341 -8.2660 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7517 -1.7716 1.2053 31 1 1.6055 -0.2620 2.1369 32 1 3.8640 -2.4131 0.2030 33 1 6.3174 -2.2422 0.2943 34 1 3.5146 1.2042 2.4345 35 1 7.7322 0.3522 3.6570 36 1 8.4135 1.5879 2.5514 37 1 3.6869 -1.0406 -3.3642 38 1 2.0085 -1.3365 -3.8777 39 1 3.7656 1.9621 -8.4332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348014330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:03 Heat of formation + Delta-G solvation = -128.941896 kcal Electronic energy + Delta-G solvation = -24428.922236 eV Core-core repulsion = 20622.011665 eV Total energy + Delta-G solvation = -3806.910570 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.30620 -40.18866 -38.44602 -36.45101 -36.34753 -33.61176 -32.46899 -30.87779 -30.41952 -29.39082 -27.00472 -25.60555 -25.53600 -23.13467 -22.86931 -21.73293 -20.38860 -18.10658 -18.01249 -17.71677 -17.53840 -17.13017 -16.42341 -15.96201 -15.59863 -14.83443 -14.67087 -14.62556 -14.33148 -14.07398 -14.01896 -13.78880 -13.33258 -13.16917 -13.11280 -12.87098 -12.65893 -12.37826 -12.20365 -12.03823 -11.78250 -11.27719 -11.12300 -11.08062 -11.05361 -10.82357 -10.73467 -10.38939 -9.92980 -9.88220 -9.10009 -8.98846 -8.33352 -8.15670 -6.57970 -6.25694 -3.98019 0.96924 1.07996 2.57556 2.68752 2.72689 3.21425 3.24845 3.25850 3.29604 3.38968 3.55392 4.16337 4.33042 4.41532 4.45703 4.68371 4.75900 4.78990 5.00982 5.02662 5.07526 5.10120 5.11910 5.16434 5.29487 5.43322 5.44984 5.56593 5.77911 5.80607 5.82542 5.89272 5.92678 6.04175 6.09847 6.11449 6.25143 6.36987 6.78491 6.96609 7.56726 8.23666 8.31826 9.19779 10.81814 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.003244 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.514807 B = 8628.109754 C =10045.516007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.087 3.913 3 H 0.087 0.913 4 C -0.071 4.071 5 C -0.076 4.076 6 C -0.091 4.091 7 C -0.098 4.098 8 C 0.028 3.972 9 C 0.030 3.970 10 C -0.097 4.097 11 O -0.310 6.310 12 C 0.214 3.786 13 O -0.309 6.309 14 O -0.353 6.353 15 C 0.479 3.521 16 O -0.488 6.488 17 C -0.128 4.128 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.921 3.079 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.271 1.271 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -6.576 23.141 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.105 0.895 4 C -0.108 4.108 5 C -0.076 4.076 6 C -0.109 4.109 7 C -0.116 4.116 8 C -0.016 4.016 9 C -0.014 4.014 10 C -0.116 4.116 11 O -0.226 6.226 12 C 0.102 3.898 13 O -0.225 6.225 14 O -0.271 6.271 15 C 0.321 3.679 16 O -0.374 6.374 17 C -0.276 4.276 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.094 0.906 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.747 3.253 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.196 1.196 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.099 0.901 36 H 0.148 0.852 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.801 -4.774 23.078 23.580 hybrid contribution 0.931 -1.675 -0.836 2.090 sum 1.732 -6.449 22.243 23.223 Atomic orbital electron populations 1.22197 0.94092 1.03046 1.03314 1.22639 0.94218 0.97527 0.82451 0.89525 1.20723 0.90508 1.02959 0.96642 1.19507 0.95816 0.94409 0.97915 1.20891 0.91687 0.99669 0.98622 1.20123 0.94643 0.96069 1.00786 1.19834 0.82362 0.97200 1.02217 1.19721 0.92853 0.89035 0.99797 1.19916 0.89757 0.99465 1.02450 1.87360 1.20128 1.36337 1.78767 1.25601 0.86077 0.87662 0.90498 1.87372 1.22638 1.59446 1.53079 1.86553 1.77594 1.42683 1.20307 1.23254 0.74213 0.85957 0.84507 1.90655 1.46848 1.16353 1.83506 1.23282 1.04423 1.05737 0.94188 1.85423 1.86737 1.08814 1.02299 1.22843 1.51693 0.96451 0.97367 0.90625 1.24998 0.94961 0.95358 0.98181 1.70015 1.45530 1.09981 1.24727 0.86134 0.78761 0.79710 0.80718 1.20194 1.20719 1.19575 0.90891 0.91437 0.91494 0.89168 0.88714 0.84007 0.84560 0.84801 0.90059 0.85245 0.88075 0.88034 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.55 37.16 0.35 -1.38 16 2 C 0.09 1.05 2.55 -26.73 -0.07 0.98 16 3 H 0.09 1.21 7.16 -51.93 -0.37 0.84 16 4 C -0.07 -0.63 5.06 -27.88 -0.14 -0.77 16 5 C -0.08 -0.83 4.97 -104.62 -0.52 -1.35 16 6 C -0.09 -1.00 9.38 -39.58 -0.37 -1.37 16 7 C -0.10 -1.15 10.06 -39.46 -0.40 -1.55 16 8 C 0.03 0.37 7.15 -39.08 -0.28 0.09 16 9 C 0.03 0.39 7.15 -39.08 -0.28 0.11 16 10 C -0.10 -1.12 9.71 -39.47 -0.38 -1.50 16 11 O -0.31 -3.83 11.40 -45.68 -0.52 -4.35 16 12 C 0.21 1.95 8.89 101.05 0.90 2.85 16 13 O -0.31 -3.88 11.40 -45.70 -0.52 -4.40 16 14 O -0.35 -5.33 9.38 -39.23 -0.37 -5.70 16 15 C 0.48 9.17 7.95 36.00 0.29 9.46 16 16 O -0.49 -10.76 15.08 -18.75 -0.28 -11.04 16 17 C -0.13 -2.63 6.27 36.00 0.23 -2.40 16 18 S -0.06 -1.59 20.58 -107.50 -2.21 -3.80 16 19 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 20 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.68 8.08 -51.94 -0.42 0.26 16 31 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.13 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.94 8.14 -51.91 -0.42 1.52 16 38 H 0.10 1.91 8.14 -51.92 -0.42 1.49 16 39 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -34.78 356.22 -8.29 -43.06 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.98 Total: -0.51 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -0.48 Total: -9.65 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.73 Total: -25.22 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.69 Total: -25.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.78 -8.29 -43.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348014330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.877 kcal (2) G-P(sol) polarization free energy of solvation -34.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds