Wall clock time and date at job start Tue Mar 31 2020 13:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47433 * 2 1 4 4 C 1.53003 * 109.47447 * 120.01040 * 2 1 3 5 5 C 1.50699 * 109.47043 * 184.99859 * 4 2 1 6 6 C 1.38247 * 119.92596 * 269.97147 * 5 4 2 7 7 C 1.38240 * 120.14459 * 179.79586 * 6 5 4 8 8 C 1.38552 * 120.02633 * 0.42901 * 7 6 5 9 9 C 1.39265 * 119.82706 * 359.57585 * 8 7 6 10 10 C 1.38231 * 119.93007 * 89.99936 * 5 4 2 11 11 O 1.36496 * 108.64230 * 180.24572 * 9 8 7 12 12 C 1.43981 * 105.48444 * 342.72036 * 11 9 8 13 13 O 1.36505 * 131.53353 * 179.87931 * 8 7 6 14 14 O 1.45206 * 109.46899 * 240.00859 * 2 1 3 15 15 C 1.34220 * 117.00397 * 89.99721 * 14 2 1 16 16 O 1.20831 * 120.00037 * 0.02562 * 15 14 2 17 17 C 1.50697 * 120.00283 * 180.02562 * 15 14 2 18 18 S 1.80999 * 109.47264 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00280 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99532 * 359.97438 * 19 18 17 21 21 C 1.38794 * 120.00205 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00128 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46966 * 90.00197 * 23 21 19 25 25 H 1.48494 * 109.46992 * 210.00590 * 23 21 19 26 26 H 1.48504 * 109.46953 * 330.00626 * 23 21 19 27 27 H 1.09007 * 109.46670 * 299.99639 * 1 2 3 28 28 H 1.08996 * 109.47279 * 59.99266 * 1 2 3 29 29 H 1.08997 * 109.47433 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47128 * 64.99456 * 4 2 1 31 31 H 1.09001 * 109.46522 * 304.99072 * 4 2 1 32 32 H 1.07994 * 119.93290 * 0.04934 * 6 5 4 33 33 H 1.07997 * 119.99327 * 180.33354 * 7 6 5 34 34 H 1.08003 * 119.98943 * 359.97438 * 10 5 4 35 35 H 1.09007 * 110.56955 * 268.54960 * 12 11 9 36 36 H 1.09003 * 110.57719 * 145.67764 * 12 11 9 37 37 H 1.09003 * 109.46984 * 299.99997 * 17 15 14 38 38 H 1.08999 * 109.47258 * 60.00372 * 17 15 14 39 39 H 0.97002 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7215 1.2491 5 6 3.5420 -0.6151 1.3125 6 6 4.3277 -1.5829 0.7149 7 6 5.7059 -1.4876 0.7666 8 6 6.3031 -0.4254 1.4260 9 6 5.5115 0.5495 2.0280 10 6 4.1309 0.4496 1.9685 11 8 6.3276 1.4817 2.6008 12 6 7.6201 0.8545 2.6961 13 8 7.6153 -0.1040 1.6217 14 8 2.0139 -0.6843 -1.1857 15 6 2.2170 0.0642 -2.2812 16 8 1.9981 1.2521 -2.2503 17 6 2.7180 -0.5769 -3.5496 18 16 2.8899 0.6846 -4.8361 19 6 3.4733 -0.3125 -6.1666 20 1 3.6170 -1.3734 -6.0236 21 6 3.7483 0.2653 -7.3982 22 7 3.5737 1.5583 -7.5723 23 14 4.3676 -0.7917 -8.8084 24 1 3.2117 -1.3055 -9.5865 25 1 5.2370 0.0240 -9.6937 26 1 5.1462 -1.9341 -8.2660 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7517 -1.7716 1.2053 31 1 1.6055 -0.2620 2.1369 32 1 3.8640 -2.4131 0.2030 33 1 6.3174 -2.2422 0.2943 34 1 3.5146 1.2042 2.4345 35 1 7.7322 0.3522 3.6570 36 1 8.4135 1.5879 2.5514 37 1 3.6869 -1.0406 -3.3642 38 1 2.0085 -1.3365 -3.8777 39 1 3.7656 1.9621 -8.4332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348014330.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:03 Heat of formation + Delta-G solvation = -149.756650 kcal Electronic energy + Delta-G solvation = -24429.824831 eV Core-core repulsion = 20622.011665 eV Total energy + Delta-G solvation = -3807.813166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.14704 -41.54529 -39.36938 -37.66652 -37.31386 -34.61893 -34.59939 -31.83703 -31.34278 -30.84946 -27.77092 -27.70632 -26.38618 -24.02929 -23.92032 -22.76625 -21.57010 -19.92579 -18.92919 -18.74847 -18.58660 -18.29256 -17.37716 -17.29387 -16.92554 -16.86823 -16.10411 -15.49494 -15.48210 -15.17638 -14.95113 -14.85810 -14.59298 -14.29083 -14.20809 -14.02429 -13.89587 -13.49851 -13.22167 -13.08819 -12.90692 -12.88869 -12.78109 -12.62974 -12.20077 -11.94979 -11.79310 -11.63866 -11.56685 -11.38003 -11.15458 -10.36461 -9.86182 -9.03372 -8.72883 -8.37031 -6.16629 0.08247 0.20460 1.07129 1.20569 1.41562 1.43229 1.55401 1.77464 1.94873 2.24388 2.49825 2.52130 2.98046 3.28321 3.47025 3.64341 3.77090 3.82456 3.92240 4.02124 4.05445 4.18721 4.19335 4.25365 4.27240 4.32003 4.45272 4.50709 4.70822 4.82649 4.86272 4.94947 5.04211 5.08253 5.20945 5.26352 5.37741 5.41226 5.49817 5.56979 6.10788 6.18405 6.78129 7.04675 8.72275 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.012286 B = 0.003244 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.514807 B = 8628.109754 C =10045.516007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.079 3.921 3 H 0.064 0.936 4 C -0.061 4.061 5 C -0.081 4.081 6 C -0.095 4.095 7 C -0.109 4.109 8 C 0.006 3.994 9 C 0.009 3.991 10 C -0.105 4.105 11 O -0.328 6.328 12 C 0.204 3.796 13 O -0.329 6.329 14 O -0.340 6.340 15 C 0.488 3.512 16 O -0.524 6.524 17 C -0.108 4.108 18 S -0.142 6.142 19 C -0.547 4.547 20 H 0.086 0.914 21 C 0.016 3.984 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.258 1.258 27 H 0.102 0.898 28 H 0.038 0.962 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -8.812 24.161 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.025 3.975 3 H 0.082 0.918 4 C -0.098 4.098 5 C -0.081 4.081 6 C -0.113 4.113 7 C -0.128 4.128 8 C -0.038 4.038 9 C -0.035 4.035 10 C -0.124 4.124 11 O -0.245 6.245 12 C 0.094 3.906 13 O -0.246 6.246 14 O -0.257 6.257 15 C 0.330 3.670 16 O -0.413 6.413 17 C -0.257 4.257 18 S 0.085 5.915 19 C -0.695 4.695 20 H 0.104 0.896 21 C -0.189 4.189 22 N -0.547 5.547 23 Si 0.821 3.179 24 H -0.191 1.191 25 H -0.203 1.203 26 H -0.182 1.182 27 H 0.121 0.879 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.131 0.869 31 H 0.145 0.855 32 H 0.177 0.823 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.126 0.874 36 H 0.173 0.827 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.404 -7.032 24.134 25.141 hybrid contribution 1.038 -0.983 -0.973 1.730 sum 1.442 -8.015 23.161 24.551 Atomic orbital electron populations 1.22202 0.92375 1.04254 1.03397 1.23038 0.95644 0.96765 0.82103 0.91783 1.20810 0.88950 1.04264 0.95765 1.19803 0.97044 0.93949 0.97289 1.21197 0.91477 1.00235 0.98381 1.20420 0.95398 0.96195 1.00756 1.20145 0.82711 0.97936 1.03042 1.20044 0.93612 0.89400 1.00485 1.20250 0.89564 1.00077 1.02506 1.87311 1.21235 1.37017 1.78893 1.26093 0.85547 0.88043 0.90922 1.87321 1.22654 1.60259 1.54362 1.86518 1.77054 1.41996 1.20128 1.22897 0.73580 0.85368 0.85122 1.90651 1.48552 1.17876 1.84198 1.23073 1.06071 1.03650 0.92877 1.85554 1.87108 1.13349 1.05506 1.23194 1.51635 0.96870 0.97762 0.89583 1.26120 0.94864 0.96705 1.01236 1.70173 1.46790 1.12127 1.25619 0.84943 0.78404 0.77898 0.76694 1.19126 1.20348 1.18156 0.87935 0.94281 0.89672 0.86913 0.85463 0.82253 0.83438 0.83280 0.87411 0.82745 0.86468 0.85948 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.55 71.98 0.69 -2.29 16 2 C 0.08 1.75 2.55 30.59 0.08 1.83 16 3 H 0.06 1.75 7.16 -2.39 -0.02 1.73 16 4 C -0.06 -0.87 5.06 29.85 0.15 -0.72 16 5 C -0.08 -1.59 4.97 -19.86 -0.10 -1.69 16 6 C -0.10 -1.93 9.38 22.27 0.21 -1.72 16 7 C -0.11 -2.51 10.06 22.35 0.22 -2.28 16 8 C 0.01 0.15 7.15 22.59 0.16 0.31 16 9 C 0.01 0.23 7.15 22.59 0.16 0.39 16 10 C -0.11 -2.33 9.71 22.34 0.22 -2.11 16 11 O -0.33 -8.10 11.40 -76.01 -0.87 -8.97 16 12 C 0.20 3.63 8.89 113.37 1.01 4.64 16 13 O -0.33 -8.30 11.40 -76.10 -0.87 -9.17 16 14 O -0.34 -9.63 9.38 -51.32 -0.48 -10.11 16 15 C 0.49 18.43 7.95 71.23 0.57 19.00 16 16 O -0.52 -23.54 15.08 21.95 0.33 -23.21 16 17 C -0.11 -4.36 6.27 71.23 0.45 -3.92 16 18 S -0.14 -7.81 20.58 -56.49 -1.16 -8.98 16 19 C -0.55 -30.94 9.50 67.95 0.65 -30.29 16 20 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 21 C 0.02 0.89 5.49 84.86 0.47 1.35 16 22 N -0.91 -55.50 13.22 21.65 0.29 -55.21 16 23 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 27 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.13 1.06 8.08 -2.39 -0.02 1.04 16 32 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 38 H 0.12 4.42 8.14 -2.40 -0.02 4.40 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -78.11 356.22 5.26 -72.85 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.07 Total: 15.03 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 4.92 Total: -17.50 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 0.29 Total: -55.21 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -1.88 Total: -51.46 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.81 SS G_CDS: -1.16 Total: -8.98 kcal Total: -78.11 5.26 -72.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348014330.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.905 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds