Wall clock time and date at job start Tue Mar 31 2020 14:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48501 * 109.47224 * 270.00008 * 3 2 1 5 5 H 1.48506 * 109.47048 * 29.99866 * 3 2 1 6 6 H 1.48500 * 109.47651 * 149.99700 * 3 2 1 7 7 C 1.38632 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00040 * 179.97438 * 7 2 1 9 9 O 1.34816 * 119.99773 * 0.02562 * 7 2 1 10 10 C 1.35776 * 116.99614 * 185.26171 * 9 7 2 11 11 C 1.38921 * 119.99131 * 186.07772 * 10 9 7 12 12 C 1.37991 * 120.00302 * 180.22714 * 11 10 9 13 13 C 1.38950 * 119.99391 * 359.51653 * 12 11 10 14 14 N 1.39881 * 120.00342 * 180.23234 * 13 12 11 15 15 C 1.34780 * 119.99940 * 35.82945 * 14 13 12 16 16 O 1.21585 * 119.99973 * 355.27670 * 15 14 13 17 17 C 1.47737 * 120.00050 * 175.26874 * 15 14 13 18 18 N 1.32839 * 120.07231 * 359.72747 * 17 15 14 19 19 C 1.31674 * 122.00379 * 179.74626 * 18 17 15 20 20 C 1.38390 * 121.70825 * 0.51537 * 19 18 17 21 21 C 1.38875 * 119.13410 * 359.76221 * 20 19 18 22 22 O 1.34426 * 134.63037 * 179.97438 * 21 20 19 23 23 C 1.34458 * 110.84754 * 180.02562 * 22 21 20 24 24 C 1.34312 * 110.16317 * 359.97438 * 23 22 21 25 25 C 1.40219 * 120.07607 * 180.02562 * 17 15 14 26 26 C 1.38954 * 119.99403 * 0.24772 * 13 12 11 27 27 C 1.37992 * 119.99040 * 0.02562 * 26 13 12 28 28 H 0.97003 * 120.00360 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99660 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.99784 * 179.78681 * 12 11 10 31 31 H 0.96995 * 120.00262 * 215.83087 * 14 13 12 32 32 H 1.08000 * 119.14768 * 180.27978 * 19 18 17 33 33 H 1.07998 * 120.43421 * 179.73881 * 20 19 18 34 34 H 1.08004 * 124.91366 * 180.02562 * 23 22 21 35 35 H 1.08003 * 126.88898 * 180.02562 * 24 23 22 36 36 H 1.07995 * 120.00475 * 180.02562 * 26 13 12 37 37 H 1.08004 * 119.99053 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4403 0.7001 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0700 -3.5042 0.1120 11 6 1.4548 -4.7440 -0.0079 12 6 2.2009 -5.8988 0.1101 13 6 3.5692 -5.8214 0.3387 14 7 4.3265 -6.9918 0.4535 15 6 4.0233 -8.0673 -0.3002 16 8 3.0408 -8.0503 -1.0163 17 6 4.8848 -9.2666 -0.2565 18 7 5.9617 -9.2847 0.5211 19 6 6.7530 -10.3346 0.5930 20 6 6.5127 -11.4787 -0.1476 21 6 5.4054 -11.5220 -0.9847 22 8 4.8876 -12.4401 -1.8190 23 6 3.7736 -11.9746 -2.4108 24 6 3.5116 -10.7269 -1.9882 25 6 4.5712 -10.3861 -1.0403 26 6 4.1852 -4.5812 0.4537 27 6 3.4378 -3.4267 0.3413 28 1 -0.4851 0.8400 -0.0004 29 1 0.3919 -4.8040 -0.1901 30 1 1.7219 -6.8626 0.0203 31 1 5.0699 -7.0295 1.0754 32 1 7.6140 -10.3008 1.2441 33 1 7.1777 -12.3266 -0.0759 34 1 3.1756 -12.5247 -3.1223 35 1 2.6845 -10.1009 -2.2887 36 1 5.2488 -4.5208 0.6310 37 1 3.9165 -2.4627 0.4311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351467014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:53 Heat of formation + Delta-G solvation = 20.471385 kcal Electronic energy + Delta-G solvation = -25122.319932 eV Core-core repulsion = 21218.737207 eV Total energy + Delta-G solvation = -3903.582725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.03967 -40.35672 -39.19323 -38.43753 -36.48523 -34.05841 -33.24630 -32.31143 -32.00822 -30.25057 -30.19918 -27.95439 -25.56871 -25.00148 -23.43126 -22.74527 -22.21941 -21.32178 -20.28247 -18.42158 -18.29348 -17.86094 -17.29249 -17.03758 -16.68914 -16.27386 -15.64726 -15.14716 -14.80341 -14.62460 -14.55618 -14.23291 -13.75183 -13.61372 -13.56640 -13.30809 -13.20578 -12.80958 -12.49672 -12.19223 -11.84795 -11.57334 -11.50477 -11.00083 -10.78213 -10.68197 -10.48355 -10.39376 -9.85015 -9.82564 -9.56191 -9.29686 -8.76676 -8.67555 -8.19848 -6.93264 -6.44539 -4.02186 -0.02491 0.78330 1.93492 2.11726 2.21998 2.22721 2.71634 3.08797 3.14164 3.15118 3.19066 3.59411 3.82103 3.97325 4.08182 4.16993 4.52643 4.58384 4.65823 4.82245 4.99406 5.11349 5.30601 5.32319 5.36824 5.50765 5.58988 5.79830 5.87606 6.00555 6.15901 6.22557 6.29899 6.55531 6.81984 6.84833 6.97704 7.14898 7.21502 7.31780 7.42391 7.73073 7.78091 8.00014 8.29575 9.00871 9.71210 10.73392 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.031393 B = 0.002289 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.699424 B =12227.221952 C =12845.752690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.149 3.851 11 C -0.180 4.180 12 C -0.065 4.065 13 C 0.030 3.970 14 N -0.635 5.635 15 C 0.561 3.439 16 O -0.514 6.514 17 C 0.144 3.856 18 N -0.464 5.464 19 C 0.110 3.890 20 C -0.138 4.138 21 C 0.080 3.920 22 O -0.189 6.189 23 C 0.002 3.998 24 C -0.173 4.173 25 C -0.133 4.133 26 C -0.085 4.085 27 C -0.220 4.220 28 H 0.270 0.730 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.412 0.588 32 H 0.176 0.824 33 H 0.149 0.851 34 H 0.217 0.783 35 H 0.176 0.824 36 H 0.112 0.888 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.884 -22.886 -0.450 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.095 3.905 11 C -0.200 4.200 12 C -0.085 4.085 13 C -0.063 4.063 14 N -0.279 5.279 15 C 0.346 3.654 16 O -0.390 6.390 17 C 0.001 3.999 18 N -0.178 5.178 19 C -0.044 4.044 20 C -0.159 4.159 21 C 0.025 3.975 22 O -0.089 6.089 23 C -0.062 4.062 24 C -0.193 4.193 25 C -0.137 4.137 26 C -0.105 4.105 27 C -0.239 4.239 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.249 0.751 32 H 0.193 0.807 33 H 0.167 0.833 34 H 0.233 0.767 35 H 0.193 0.807 36 H 0.130 0.870 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.079 -22.195 -0.538 25.274 hybrid contribution 0.721 0.098 -0.222 0.761 sum 12.800 -22.097 -0.760 25.548 Atomic orbital electron populations 1.70042 1.05963 1.27693 1.45924 1.25291 0.95845 0.98855 0.96565 0.85712 0.78898 0.80091 0.78722 1.19882 1.20270 1.19191 1.21317 0.91787 0.80873 1.52741 0.89062 1.84002 1.34180 1.11430 1.78246 1.19444 0.90380 0.88045 0.92681 1.20134 1.00095 0.89541 1.10182 1.20730 0.91586 0.98099 0.98098 1.17267 0.90768 0.84416 1.13800 1.42989 1.33538 1.11190 1.40168 1.17672 0.84703 0.82376 0.80625 1.90779 1.26511 1.81254 1.40410 1.20748 0.92897 0.93077 0.93228 1.67677 1.03346 1.28483 1.18255 1.22595 0.98062 0.86959 0.96766 1.21198 0.95980 1.01575 0.97137 1.19719 0.96060 0.87835 0.93890 1.83979 1.36767 1.39898 1.48227 1.24315 0.87356 0.95474 0.99024 1.22779 1.01007 0.96470 0.99072 1.20636 0.97682 0.94928 1.00495 1.20512 0.98443 0.90702 1.00808 1.20981 0.94185 0.98359 1.10421 0.91996 0.86071 0.85340 0.75121 0.80710 0.83338 0.76681 0.80672 0.86977 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.46 29.55 -169.99 -5.02 15.43 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.89 9.44 30.88 0.29 -10.60 16 8 H 0.09 2.34 5.29 -52.49 -0.28 2.06 16 9 O -0.18 -5.02 9.76 0.01 0.00 -5.02 16 10 C 0.15 3.63 6.65 -39.08 -0.26 3.37 16 11 C -0.18 -3.97 9.98 -39.42 -0.39 -4.36 16 12 C -0.07 -1.30 8.68 -39.41 -0.34 -1.64 16 13 C 0.03 0.55 6.29 -83.66 -0.53 0.02 16 14 N -0.63 -9.75 5.32 -10.71 -0.06 -9.81 16 15 C 0.56 8.87 7.64 -12.38 -0.09 8.77 16 16 O -0.51 -9.32 12.68 5.29 0.07 -9.25 16 17 C 0.14 1.92 6.78 -82.81 -0.56 1.36 16 18 N -0.46 -5.20 9.56 -9.69 -0.09 -5.29 16 19 C 0.11 0.87 11.13 -17.56 -0.20 0.68 16 20 C -0.14 -1.06 10.13 -39.29 -0.40 -1.46 16 21 C 0.08 0.82 7.48 -38.28 -0.29 0.54 16 22 O -0.19 -1.79 10.57 4.95 0.05 -1.74 16 23 C 0.00 0.02 11.97 29.35 0.35 0.37 16 24 C -0.17 -1.89 10.31 -37.78 -0.39 -2.28 16 25 C -0.13 -1.66 6.16 -104.90 -0.65 -2.30 16 26 C -0.08 -1.56 9.96 -39.41 -0.39 -1.95 16 27 C -0.22 -4.75 9.12 -39.42 -0.36 -5.11 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 30 H 0.13 2.47 6.27 -52.49 -0.33 2.14 16 31 H 0.41 5.29 8.17 -40.82 -0.33 4.96 16 32 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.22 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.18 1.97 7.29 -52.48 -0.38 1.58 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.13 2.81 5.71 -52.48 -0.30 2.51 16 LS Contribution 330.98 15.07 4.99 4.99 Total: -1.00 -34.01 330.98 -6.48 -40.48 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -2.87 Total: 8.36 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -4.30 Total: -13.63 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.61 Total: -39.63 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.12 Total: -16.01 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.01 -6.48 -40.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351467014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.955 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds