Wall clock time and date at job start Tue Mar 31 2020 14:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86801 * 120.00061 * 2 1 4 4 H 1.48501 * 109.47224 * 270.00008 * 3 2 1 5 5 H 1.48506 * 109.47048 * 29.99866 * 3 2 1 6 6 H 1.48500 * 109.47651 * 149.99700 * 3 2 1 7 7 C 1.38632 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00040 * 179.97438 * 7 2 1 9 9 O 1.34816 * 119.99773 * 0.02562 * 7 2 1 10 10 C 1.35776 * 116.99614 * 185.26171 * 9 7 2 11 11 C 1.38921 * 119.99131 * 186.07772 * 10 9 7 12 12 C 1.37991 * 120.00302 * 180.22714 * 11 10 9 13 13 C 1.38950 * 119.99391 * 359.51653 * 12 11 10 14 14 N 1.39881 * 120.00342 * 180.23234 * 13 12 11 15 15 C 1.34780 * 119.99940 * 35.82945 * 14 13 12 16 16 O 1.21585 * 119.99973 * 355.27670 * 15 14 13 17 17 C 1.47737 * 120.00050 * 175.26874 * 15 14 13 18 18 N 1.32839 * 120.07231 * 359.72747 * 17 15 14 19 19 C 1.31674 * 122.00379 * 179.74626 * 18 17 15 20 20 C 1.38390 * 121.70825 * 0.51537 * 19 18 17 21 21 C 1.38875 * 119.13410 * 359.76221 * 20 19 18 22 22 O 1.34426 * 134.63037 * 179.97438 * 21 20 19 23 23 C 1.34458 * 110.84754 * 180.02562 * 22 21 20 24 24 C 1.34312 * 110.16317 * 359.97438 * 23 22 21 25 25 C 1.40219 * 120.07607 * 180.02562 * 17 15 14 26 26 C 1.38954 * 119.99403 * 0.24772 * 13 12 11 27 27 C 1.37992 * 119.99040 * 0.02562 * 26 13 12 28 28 H 0.97003 * 120.00360 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99660 * 0.02562 * 11 10 9 30 30 H 1.08000 * 119.99784 * 179.78681 * 12 11 10 31 31 H 0.96995 * 120.00262 * 215.83087 * 14 13 12 32 32 H 1.08000 * 119.14768 * 180.27978 * 19 18 17 33 33 H 1.07998 * 120.43421 * 179.73881 * 20 19 18 34 34 H 1.08004 * 124.91366 * 180.02562 * 23 22 21 35 35 H 1.08003 * 126.88898 * 180.02562 * 24 23 22 36 36 H 1.07995 * 120.00475 * 180.02562 * 26 13 12 37 37 H 1.08004 * 119.99053 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5472 1.4403 0.7001 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3348 -2.3681 0.0005 10 6 2.0700 -3.5042 0.1120 11 6 1.4548 -4.7440 -0.0079 12 6 2.2009 -5.8988 0.1101 13 6 3.5692 -5.8214 0.3387 14 7 4.3265 -6.9918 0.4535 15 6 4.0233 -8.0673 -0.3002 16 8 3.0408 -8.0503 -1.0163 17 6 4.8848 -9.2666 -0.2565 18 7 5.9617 -9.2847 0.5211 19 6 6.7530 -10.3346 0.5930 20 6 6.5127 -11.4787 -0.1476 21 6 5.4054 -11.5220 -0.9847 22 8 4.8876 -12.4401 -1.8190 23 6 3.7736 -11.9746 -2.4108 24 6 3.5116 -10.7269 -1.9882 25 6 4.5712 -10.3861 -1.0403 26 6 4.1852 -4.5812 0.4537 27 6 3.4378 -3.4267 0.3413 28 1 -0.4851 0.8400 -0.0004 29 1 0.3919 -4.8040 -0.1901 30 1 1.7219 -6.8626 0.0203 31 1 5.0699 -7.0295 1.0754 32 1 7.6140 -10.3008 1.2441 33 1 7.1777 -12.3266 -0.0759 34 1 3.1756 -12.5247 -3.1223 35 1 2.6845 -10.1009 -2.2887 36 1 5.2488 -4.5208 0.6310 37 1 3.9165 -2.4627 0.4311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351467014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:52 Heat of formation + Delta-G solvation = -3.053388 kcal Electronic energy + Delta-G solvation = -25123.340042 eV Core-core repulsion = 21218.737207 eV Total energy + Delta-G solvation = -3904.602835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.76493 -41.63398 -40.56013 -39.70469 -38.14621 -35.52356 -34.18662 -34.00703 -32.91313 -31.90064 -31.06280 -29.48883 -27.38976 -26.09271 -24.21041 -23.96239 -23.66445 -22.61524 -21.58237 -19.94683 -19.34952 -19.01037 -18.83602 -18.11042 -17.70587 -17.43173 -16.48847 -16.37178 -16.35252 -16.03633 -15.71950 -15.51746 -15.39651 -15.14957 -14.61190 -14.42842 -14.39457 -14.10664 -13.92156 -13.60595 -13.30635 -13.20590 -12.94971 -12.66207 -12.51933 -12.11055 -11.45585 -11.44144 -11.33396 -11.11090 -10.84564 -10.58627 -10.55622 -9.87280 -9.46756 -8.65009 -8.45722 -6.13011 -0.83852 0.05155 0.49907 0.53365 1.21657 1.37438 1.45762 1.55162 1.57100 1.61350 1.90971 2.19501 2.67215 2.82709 2.99006 3.15862 3.27561 3.45863 3.49514 3.79844 4.00298 4.03427 4.11708 4.21776 4.29429 4.48045 4.55524 4.59447 4.71387 4.73633 4.86325 5.05937 5.16382 5.17971 5.27040 5.32561 5.44131 5.51908 5.65204 5.84601 6.02034 6.10264 6.32659 6.66782 6.98288 7.04702 7.78279 8.77525 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.031393 B = 0.002289 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.699424 B =12227.221952 C =12845.752690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.413 4.413 8 H 0.106 0.894 9 O -0.229 6.229 10 C 0.112 3.888 11 C -0.188 4.188 12 C -0.070 4.070 13 C 0.055 3.945 14 N -0.630 5.630 15 C 0.562 3.438 16 O -0.545 6.545 17 C 0.107 3.893 18 N -0.469 5.469 19 C 0.107 3.893 20 C -0.111 4.111 21 C 0.062 3.938 22 O -0.188 6.188 23 C 0.040 3.960 24 C -0.222 4.222 25 C -0.152 4.152 26 C -0.075 4.075 27 C -0.219 4.219 28 H 0.273 0.727 29 H 0.116 0.884 30 H 0.134 0.866 31 H 0.427 0.573 32 H 0.220 0.780 33 H 0.191 0.809 34 H 0.262 0.738 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.055 -25.656 -0.059 30.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.839 3.161 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.489 4.489 8 H 0.123 0.877 9 O -0.135 6.135 10 C 0.061 3.939 11 C -0.208 4.208 12 C -0.090 4.090 13 C -0.038 4.038 14 N -0.276 5.276 15 C 0.349 3.651 16 O -0.422 6.422 17 C -0.035 4.035 18 N -0.182 5.182 19 C -0.048 4.048 20 C -0.131 4.131 21 C 0.007 3.993 22 O -0.088 6.088 23 C -0.024 4.024 24 C -0.242 4.242 25 C -0.156 4.156 26 C -0.095 4.095 27 C -0.239 4.239 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.267 0.733 32 H 0.236 0.764 33 H 0.208 0.792 34 H 0.278 0.722 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.300 -25.028 -0.129 29.868 hybrid contribution -0.398 0.431 -0.360 0.689 sum 15.902 -24.596 -0.490 29.293 Atomic orbital electron populations 1.70197 1.08125 1.28831 1.48773 1.26626 0.96848 1.02850 0.95830 0.84565 0.77917 0.74405 0.79189 1.18982 1.19747 1.17244 1.21860 0.92666 0.81294 1.53048 0.87684 1.83969 1.35812 1.12544 1.81166 1.19874 0.91820 0.87667 0.94548 1.20254 1.00294 0.89797 1.10436 1.20833 0.92527 0.97423 0.98194 1.17412 0.90377 0.85877 1.10154 1.42919 1.33657 1.10134 1.40855 1.18163 0.84459 0.82923 0.79578 1.90758 1.28005 1.81939 1.41528 1.20250 0.94428 0.92524 0.96284 1.67612 1.02887 1.30106 1.17594 1.23380 0.98409 0.86017 0.97015 1.21767 0.94669 1.02408 0.94285 1.20104 0.96873 0.87311 0.94992 1.84013 1.37052 1.39644 1.48105 1.25089 0.85959 0.94244 0.97128 1.22803 1.01772 0.98245 1.01350 1.20919 0.98618 0.95543 1.00537 1.20838 1.00275 0.89266 0.99149 1.21122 0.93166 0.99734 1.09830 0.91844 0.86625 0.84827 0.73319 0.76396 0.79227 0.72222 0.82229 0.82614 0.84811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.02 13.67 21.61 0.30 -56.72 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 3 Si 1.02 42.73 29.55 68.60 2.03 44.76 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.41 -24.01 9.44 67.91 0.64 -23.36 16 8 H 0.11 5.52 5.29 -2.91 -0.02 5.50 16 9 O -0.23 -13.93 9.76 -22.89 -0.22 -14.16 16 10 C 0.11 5.72 6.65 22.59 0.15 5.87 16 11 C -0.19 -8.75 9.98 22.37 0.22 -8.52 16 12 C -0.07 -2.84 8.68 22.38 0.19 -2.65 16 13 C 0.06 1.98 6.29 38.20 0.24 2.22 16 14 N -0.63 -18.49 5.32 -306.05 -1.63 -20.12 16 15 C 0.56 17.63 7.64 86.75 0.66 18.29 16 16 O -0.55 -20.28 12.68 -3.98 -0.05 -20.34 16 17 C 0.11 2.74 6.78 41.99 0.28 3.03 16 18 N -0.47 -9.29 9.56 -184.57 -1.76 -11.06 16 19 C 0.11 1.23 11.13 84.75 0.94 2.18 16 20 C -0.11 -1.21 10.13 22.46 0.23 -0.98 16 21 C 0.06 1.10 7.48 23.11 0.17 1.28 16 22 O -0.19 -2.99 10.57 -5.19 -0.05 -3.04 16 23 C 0.04 0.53 11.97 66.92 0.80 1.34 16 24 C -0.22 -4.78 10.31 23.44 0.24 -4.54 16 25 C -0.15 -3.63 6.16 -20.04 -0.12 -3.76 16 26 C -0.08 -2.65 9.96 22.38 0.22 -2.43 16 27 C -0.22 -9.52 9.12 22.37 0.20 -9.31 16 28 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.12 5.34 8.06 -2.91 -0.02 5.32 16 30 H 0.13 5.30 6.27 -2.91 -0.02 5.28 16 31 H 0.43 9.98 8.17 -92.71 -0.76 9.22 16 32 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 33 H 0.19 0.48 8.06 -2.91 -0.02 0.45 16 34 H 0.26 0.74 8.06 -2.91 -0.02 0.72 16 35 H 0.16 3.84 7.29 -2.91 -0.02 3.82 16 36 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 37 H 0.13 5.71 5.71 -2.91 -0.02 5.69 16 Total: -1.00 -81.26 330.98 4.56 -76.71 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 0.40 Total: 26.22 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 5.55 Total: -22.25 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -3.10 Total: -87.90 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.33 Total: -37.53 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -81.26 4.56 -76.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351467014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.653 kcal (2) G-P(sol) polarization free energy of solvation -81.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds