Wall clock time and date at job start Tue Mar 31 2020 14:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48503 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47383 * 300.00476 * 3 2 1 6 6 H 1.48502 * 109.46993 * 60.00519 * 3 2 1 7 7 C 1.38648 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00319 * 179.97438 * 7 2 1 9 9 O 1.34838 * 119.99900 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99922 * 174.96652 * 9 7 2 11 11 C 1.38953 * 120.03270 * 5.36162 * 10 9 7 12 12 C 1.38136 * 120.07498 * 179.97438 * 11 10 9 13 13 C 1.38201 * 120.13988 * 359.74390 * 12 11 10 14 14 C 1.38949 * 120.06163 * 0.51287 * 13 12 11 15 15 N 1.39819 * 120.03501 * 179.76787 * 14 13 12 16 16 C 1.34772 * 120.00059 * 214.84465 * 15 14 13 17 17 O 1.21583 * 119.99580 * 355.76605 * 16 15 14 18 18 C 1.47737 * 120.00474 * 175.76524 * 16 15 14 19 19 N 1.32826 * 120.07384 * 359.72689 * 18 16 15 20 20 C 1.31680 * 122.00971 * 179.74076 * 19 18 16 21 21 C 1.38383 * 121.70261 * 0.52376 * 20 19 18 22 22 C 1.38864 * 119.13884 * 359.75287 * 21 20 19 23 23 O 1.34429 * 134.63784 * 179.97438 * 22 21 20 24 24 C 1.34448 * 110.85205 * 180.02562 * 23 22 21 25 25 C 1.34304 * 110.16509 * 359.97438 * 24 23 22 26 26 C 1.40218 * 120.07636 * 179.97438 * 18 16 15 27 27 C 1.38727 * 120.02840 * 185.34149 * 10 9 7 28 28 H 0.97000 * 119.99885 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.96137 * 359.96063 * 11 10 9 30 30 H 1.08000 * 119.92746 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.96404 * 180.27942 * 13 12 11 32 32 H 0.97003 * 120.00141 * 35.11505 * 15 14 13 33 33 H 1.08008 * 119.14930 * 180.25756 * 20 19 18 34 34 H 1.08000 * 120.43181 * 179.73494 * 21 20 19 35 35 H 1.08007 * 124.91542 * 179.97438 * 24 23 22 36 36 H 1.08004 * 126.89169 * 180.02562 * 25 24 23 37 37 H 1.08001 * 120.07254 * 0.04646 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 -0.1072 11 6 3.4579 -3.4381 -0.0978 12 6 4.2070 -4.5937 -0.2058 13 6 3.5792 -5.8197 -0.3181 14 6 2.1917 -5.8923 -0.3335 15 7 1.5571 -7.1326 -0.4520 16 6 0.4019 -7.2356 -1.1384 17 8 -0.1285 -6.2385 -1.5889 18 6 -0.2201 -8.5598 -1.3436 19 7 0.3609 -9.6506 -0.8568 20 6 -0.1624 -10.8489 -1.0128 21 6 -1.3456 -11.0413 -1.7042 22 6 -2.0005 -9.9417 -2.2430 23 8 -3.1306 -9.7684 -2.9500 24 6 -3.3223 -8.4684 -3.2347 25 6 -2.3230 -7.7304 -2.7244 26 6 -1.4222 -8.6687 -2.0571 27 6 1.4365 -4.7330 -0.2252 28 1 -0.4850 0.8400 0.0004 29 1 3.9515 -2.4819 -0.0063 30 1 5.2857 -4.5393 -0.1978 31 1 4.1676 -6.7218 -0.3978 32 1 1.9463 -7.9182 -0.0369 33 1 0.3473 -11.7041 -0.5940 34 1 -1.7542 -12.0339 -1.8235 35 1 -4.1589 -8.0748 -3.7930 36 1 -2.2081 -6.6587 -2.7931 37 1 0.3579 -4.7871 -0.2332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357281586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:57 Heat of formation + Delta-G solvation = 22.253797 kcal Electronic energy + Delta-G solvation = -25454.326903 eV Core-core repulsion = 21550.821470 eV Total energy + Delta-G solvation = -3903.505433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.97091 -40.35992 -39.16007 -38.35913 -36.49515 -34.15418 -33.17892 -32.25073 -32.09798 -30.27834 -29.38520 -28.36974 -25.48416 -25.07755 -23.39770 -22.88655 -21.96035 -21.24455 -20.31548 -18.45558 -18.14692 -17.95648 -17.25525 -16.81392 -16.61773 -15.67677 -15.58603 -15.16304 -15.02497 -14.65268 -14.55527 -14.21079 -13.95060 -13.64251 -13.49405 -13.33362 -13.10728 -12.79150 -12.47484 -12.12084 -11.73791 -11.51305 -11.21662 -11.01519 -10.76963 -10.61234 -10.42243 -10.36567 -9.85783 -9.78193 -9.67530 -9.18993 -8.79622 -8.67243 -7.68054 -7.15792 -6.39789 -3.98810 0.02752 0.83892 1.98953 2.08453 2.29772 2.37000 2.74952 3.06358 3.15538 3.17530 3.22646 3.63362 3.84828 4.00418 4.13094 4.23312 4.56505 4.62345 4.71855 4.87783 5.02895 5.14916 5.32968 5.41445 5.44717 5.59125 5.66008 5.87431 5.93455 6.10418 6.13099 6.25224 6.40329 6.62943 6.69233 6.88687 7.06014 7.09957 7.34962 7.38068 7.50084 7.73829 7.80225 8.05211 8.29280 9.05368 9.76761 10.78246 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002878 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.426926 B = 9725.384330 C =11095.083950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.167 3.833 11 C -0.243 4.243 12 C -0.059 4.059 13 C -0.231 4.231 14 C 0.172 3.828 15 N -0.647 5.647 16 C 0.563 3.437 17 O -0.495 6.495 18 C 0.143 3.857 19 N -0.464 5.464 20 C 0.109 3.891 21 C -0.137 4.137 22 C 0.080 3.920 23 O -0.189 6.189 24 C 0.004 3.996 25 C -0.173 4.173 26 C -0.131 4.131 27 C -0.187 4.187 28 H 0.269 0.731 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.416 0.584 33 H 0.176 0.824 34 H 0.149 0.851 35 H 0.218 0.782 36 H 0.178 0.822 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.941 -21.439 -3.805 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.112 3.888 11 C -0.263 4.263 12 C -0.078 4.078 13 C -0.252 4.252 14 C 0.079 3.921 15 N -0.291 5.291 16 C 0.348 3.652 17 O -0.367 6.367 18 C 0.000 4.000 19 N -0.177 5.177 20 C -0.045 4.045 21 C -0.158 4.158 22 C 0.025 3.975 23 O -0.089 6.089 24 C -0.060 4.060 25 C -0.193 4.193 26 C -0.135 4.135 27 C -0.208 4.208 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.253 0.747 33 H 0.193 0.807 34 H 0.167 0.833 35 H 0.234 0.766 36 H 0.195 0.805 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.190 -20.670 -3.760 21.123 hybrid contribution -0.068 0.377 -0.292 0.482 sum -2.259 -20.293 -4.052 20.816 Atomic orbital electron populations 1.70064 1.05955 1.27478 1.46080 1.25297 0.95837 0.98818 0.96626 0.85645 0.79137 0.80412 0.78199 1.19082 1.20179 1.20187 1.21396 0.91846 0.80781 1.52681 0.88935 1.83991 1.34249 1.11334 1.78165 1.19116 0.90011 0.87821 0.91854 1.21199 0.93750 0.99099 1.12260 1.20510 0.98432 0.91632 0.97193 1.20297 0.91779 0.97841 1.15288 1.17194 0.90988 0.83699 1.00186 1.43132 1.23415 1.10499 1.52077 1.17734 0.81273 0.87055 0.79167 1.90873 1.61342 1.36089 1.48436 1.20678 0.91183 0.92936 0.95214 1.67655 1.32725 0.98463 1.18900 1.22579 0.91899 0.94729 0.95303 1.21188 0.96531 0.97540 1.00493 1.19715 0.87027 0.95278 0.95481 1.83976 1.36763 1.28489 1.59626 1.24326 1.01130 0.79156 1.01434 1.22832 0.93750 1.01702 1.01018 1.20644 0.97022 0.94133 1.01747 1.20165 1.00571 0.89210 1.10830 0.92115 0.85408 0.86951 0.87194 0.74693 0.80708 0.83332 0.76595 0.80513 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.39 -11.17 9.49 30.88 0.29 -10.88 16 8 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 9 O -0.17 -5.17 9.76 0.03 0.00 -5.17 16 10 C 0.17 4.23 6.64 -39.14 -0.26 3.97 16 11 C -0.24 -5.41 9.17 -39.35 -0.36 -5.77 16 12 C -0.06 -1.09 10.03 -39.63 -0.40 -1.49 16 13 C -0.23 -4.09 9.96 -39.33 -0.39 -4.48 16 14 C 0.17 3.36 6.29 -83.75 -0.53 2.83 16 15 N -0.65 -10.54 5.32 -10.77 -0.06 -10.60 16 16 C 0.56 9.73 7.64 -12.38 -0.09 9.63 16 17 O -0.49 -10.19 12.65 5.29 0.07 -10.12 16 18 C 0.14 2.06 6.78 -82.81 -0.56 1.50 16 19 N -0.46 -5.47 9.56 -9.69 -0.09 -5.57 16 20 C 0.11 0.92 11.13 -17.56 -0.20 0.72 16 21 C -0.14 -1.13 10.13 -39.30 -0.40 -1.53 16 22 C 0.08 0.90 7.48 -38.28 -0.29 0.61 16 23 O -0.19 -1.97 10.57 4.97 0.05 -1.92 16 24 C 0.00 0.03 11.97 29.34 0.35 0.38 16 25 C -0.17 -2.17 10.31 -37.78 -0.39 -2.56 16 26 C -0.13 -1.79 6.16 -104.90 -0.65 -2.43 16 27 C -0.19 -4.36 8.63 -39.20 -0.34 -4.70 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.13 2.81 5.63 -52.49 -0.30 2.52 16 30 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.42 5.50 8.17 -40.82 -0.33 5.17 16 33 H 0.18 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.22 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.18 2.38 7.29 -52.48 -0.38 2.00 16 37 H 0.13 3.32 6.23 -52.49 -0.33 2.99 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -35.23 330.83 -6.47 -41.70 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -2.86 Total: 9.15 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -4.30 Total: -13.22 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.61 Total: -41.24 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.12 Total: -17.22 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.23 -6.47 -41.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357281586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.957 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds