Wall clock time and date at job start Tue Mar 31 2020 14:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48503 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47383 * 300.00476 * 3 2 1 6 6 H 1.48502 * 109.46993 * 60.00519 * 3 2 1 7 7 C 1.38648 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00319 * 179.97438 * 7 2 1 9 9 O 1.34838 * 119.99900 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99922 * 174.96652 * 9 7 2 11 11 C 1.38953 * 120.03270 * 5.36162 * 10 9 7 12 12 C 1.38136 * 120.07498 * 179.97438 * 11 10 9 13 13 C 1.38201 * 120.13988 * 359.74390 * 12 11 10 14 14 C 1.38949 * 120.06163 * 0.51287 * 13 12 11 15 15 N 1.39819 * 120.03501 * 179.76787 * 14 13 12 16 16 C 1.34772 * 120.00059 * 214.84465 * 15 14 13 17 17 O 1.21583 * 119.99580 * 355.76605 * 16 15 14 18 18 C 1.47737 * 120.00474 * 175.76524 * 16 15 14 19 19 N 1.32826 * 120.07384 * 359.72689 * 18 16 15 20 20 C 1.31680 * 122.00971 * 179.74076 * 19 18 16 21 21 C 1.38383 * 121.70261 * 0.52376 * 20 19 18 22 22 C 1.38864 * 119.13884 * 359.75287 * 21 20 19 23 23 O 1.34429 * 134.63784 * 179.97438 * 22 21 20 24 24 C 1.34448 * 110.85205 * 180.02562 * 23 22 21 25 25 C 1.34304 * 110.16509 * 359.97438 * 24 23 22 26 26 C 1.40218 * 120.07636 * 179.97438 * 18 16 15 27 27 C 1.38727 * 120.02840 * 185.34149 * 10 9 7 28 28 H 0.97000 * 119.99885 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.96137 * 359.96063 * 11 10 9 30 30 H 1.08000 * 119.92746 * 180.02562 * 12 11 10 31 31 H 1.07996 * 119.96404 * 180.27942 * 13 12 11 32 32 H 0.97003 * 120.00141 * 35.11505 * 15 14 13 33 33 H 1.08008 * 119.14930 * 180.25756 * 20 19 18 34 34 H 1.08000 * 120.43181 * 179.73494 * 21 20 19 35 35 H 1.08007 * 124.91542 * 179.97438 * 24 23 22 36 36 H 1.08004 * 126.89169 * 180.02562 * 25 24 23 37 37 H 1.08001 * 120.07254 * 0.04646 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5045 -0.1072 11 6 3.4579 -3.4381 -0.0978 12 6 4.2070 -4.5937 -0.2058 13 6 3.5792 -5.8197 -0.3181 14 6 2.1917 -5.8923 -0.3335 15 7 1.5571 -7.1326 -0.4520 16 6 0.4019 -7.2356 -1.1384 17 8 -0.1285 -6.2385 -1.5889 18 6 -0.2201 -8.5598 -1.3436 19 7 0.3609 -9.6506 -0.8568 20 6 -0.1624 -10.8489 -1.0128 21 6 -1.3456 -11.0413 -1.7042 22 6 -2.0005 -9.9417 -2.2430 23 8 -3.1306 -9.7684 -2.9500 24 6 -3.3223 -8.4684 -3.2347 25 6 -2.3230 -7.7304 -2.7244 26 6 -1.4222 -8.6687 -2.0571 27 6 1.4365 -4.7330 -0.2252 28 1 -0.4850 0.8400 0.0004 29 1 3.9515 -2.4819 -0.0063 30 1 5.2857 -4.5393 -0.1978 31 1 4.1676 -6.7218 -0.3978 32 1 1.9463 -7.9182 -0.0369 33 1 0.3473 -11.7041 -0.5940 34 1 -1.7542 -12.0339 -1.8235 35 1 -4.1589 -8.0748 -3.7930 36 1 -2.2081 -6.6587 -2.7931 37 1 0.3579 -4.7871 -0.2332 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357281586.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:57 Heat of formation + Delta-G solvation = -3.473751 kcal Electronic energy + Delta-G solvation = -25455.442534 eV Core-core repulsion = 21550.821470 eV Total energy + Delta-G solvation = -3904.621064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.80460 -41.72398 -40.55202 -39.72259 -38.21798 -35.67561 -34.27203 -34.05468 -33.01480 -31.41169 -30.91244 -29.91216 -27.37686 -26.28190 -24.36323 -23.99963 -23.37805 -22.76296 -21.62618 -20.03447 -19.44494 -18.98108 -18.80491 -17.95552 -17.47312 -17.21674 -16.78830 -16.57304 -16.40870 -16.07420 -15.92002 -15.53017 -15.43502 -15.38938 -14.61734 -14.44124 -14.26895 -14.24138 -13.97874 -13.60705 -13.22680 -13.03301 -12.94427 -12.71913 -12.39426 -12.08436 -11.62464 -11.49898 -11.35288 -11.16793 -10.82354 -10.78317 -10.60735 -9.54728 -9.35307 -8.90577 -8.46828 -6.16539 -0.88856 0.02138 0.41728 0.68068 1.16593 1.34610 1.43625 1.52960 1.54407 1.57181 1.79228 2.18415 2.63967 2.81623 2.91888 3.16244 3.21388 3.41486 3.51612 3.78318 3.97360 4.12349 4.18072 4.27166 4.34536 4.39658 4.52850 4.65305 4.70708 4.72044 4.81912 5.01097 5.10715 5.12981 5.29480 5.37939 5.40817 5.61293 5.71523 5.80585 6.02304 6.14577 6.25222 6.62370 6.96496 6.98289 7.78841 8.77216 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.002878 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.426926 B = 9725.384330 C =11095.083950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.027 4.027 3 Si 1.024 2.976 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.108 0.892 9 O -0.235 6.235 10 C 0.128 3.872 11 C -0.251 4.251 12 C -0.046 4.046 13 C -0.202 4.202 14 C 0.178 3.822 15 N -0.636 5.636 16 C 0.559 3.441 17 O -0.542 6.542 18 C 0.105 3.895 19 N -0.464 5.464 20 C 0.108 3.892 21 C -0.107 4.107 22 C 0.064 3.936 23 O -0.185 6.185 24 C 0.045 3.955 25 C -0.229 4.229 26 C -0.153 4.153 27 C -0.212 4.212 28 H 0.272 0.728 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.433 0.567 33 H 0.225 0.775 34 H 0.195 0.805 35 H 0.262 0.738 36 H 0.151 0.849 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 -25.503 -4.127 25.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.224 4.224 3 Si 0.843 3.157 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.125 0.875 9 O -0.141 6.141 10 C 0.077 3.923 11 C -0.271 4.271 12 C -0.065 4.065 13 C -0.222 4.222 14 C 0.084 3.916 15 N -0.282 5.282 16 C 0.346 3.654 17 O -0.418 6.418 18 C -0.036 4.036 19 N -0.178 5.178 20 C -0.047 4.047 21 C -0.127 4.127 22 C 0.009 3.991 23 O -0.085 6.085 24 C -0.019 4.019 25 C -0.249 4.249 26 C -0.157 4.157 27 C -0.234 4.234 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.181 0.819 31 H 0.180 0.820 32 H 0.274 0.726 33 H 0.241 0.759 34 H 0.212 0.788 35 H 0.278 0.722 36 H 0.168 0.832 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.237 -24.822 -4.066 25.154 hybrid contribution -0.804 1.149 -0.240 1.423 sum -0.567 -23.673 -4.306 24.068 Atomic orbital electron populations 1.70232 1.08286 1.28727 1.49008 1.26719 0.96881 1.03017 0.95806 0.84461 0.78388 0.74381 0.78488 1.16940 1.19496 1.19259 1.21972 0.92745 0.81195 1.53040 0.87508 1.83961 1.36223 1.12689 1.81236 1.19620 0.91741 0.87284 0.93617 1.21361 0.92398 1.00835 1.12481 1.21052 1.00689 0.90174 0.94549 1.20902 0.90788 0.99644 1.10851 1.17368 0.91990 0.83662 0.98594 1.43052 1.23289 1.09852 1.52007 1.18348 0.80862 0.88100 0.78092 1.90858 1.62488 1.38214 1.50240 1.20141 0.92497 0.92192 0.98786 1.67594 1.32903 0.98932 1.18328 1.23461 0.92058 0.94530 0.94616 1.21812 0.95237 0.98505 0.97117 1.20130 0.87385 0.95146 0.96450 1.84009 1.36445 1.28596 1.59428 1.25037 1.00244 0.78290 0.98357 1.22777 0.96296 1.01141 1.04679 1.20921 0.97162 0.95838 1.01803 1.20162 0.99569 0.90626 1.13036 0.91891 0.85564 0.81909 0.82003 0.72624 0.75858 0.78815 0.72199 0.83154 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.57 13.67 21.61 0.30 -59.28 16 2 C -0.03 -1.62 5.49 84.83 0.47 -1.16 16 3 Si 1.02 44.29 29.55 68.60 2.03 46.32 16 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.41 -25.18 9.49 67.92 0.64 -24.54 16 8 H 0.11 5.87 5.20 -2.91 -0.02 5.85 16 9 O -0.23 -15.22 9.76 -22.81 -0.22 -15.44 16 10 C 0.13 6.99 6.64 22.56 0.15 7.14 16 11 C -0.25 -11.28 9.17 22.42 0.21 -11.07 16 12 C -0.05 -1.57 10.03 22.24 0.22 -1.35 16 13 C -0.20 -6.46 9.96 22.43 0.22 -6.23 16 14 C 0.18 6.97 6.29 38.17 0.24 7.21 16 15 N -0.64 -20.83 5.32 -306.24 -1.63 -22.46 16 16 C 0.56 20.54 7.64 86.76 0.66 21.20 16 17 O -0.54 -24.88 12.65 -3.98 -0.05 -24.93 16 18 C 0.11 3.09 6.78 41.99 0.28 3.37 16 19 N -0.46 -10.07 9.56 -184.57 -1.76 -11.83 16 20 C 0.11 1.37 11.13 84.75 0.94 2.32 16 21 C -0.11 -1.31 10.13 22.45 0.23 -1.09 16 22 C 0.06 1.30 7.48 23.11 0.17 1.47 16 23 O -0.19 -3.47 10.57 -5.12 -0.05 -3.52 16 24 C 0.04 0.79 11.97 66.92 0.80 1.59 16 25 C -0.23 -6.21 10.31 23.44 0.24 -5.97 16 26 C -0.15 -4.28 6.16 -20.04 -0.12 -4.40 16 27 C -0.21 -10.72 8.63 22.52 0.19 -10.52 16 28 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.13 5.62 5.63 -2.91 -0.02 5.61 16 30 H 0.16 3.98 8.06 -2.91 -0.02 3.95 16 31 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.43 10.78 8.17 -92.71 -0.76 10.03 16 33 H 0.23 0.57 8.06 -2.91 -0.02 0.55 16 34 H 0.19 0.65 8.06 -2.91 -0.02 0.62 16 35 H 0.26 1.88 8.06 -2.91 -0.02 1.85 16 36 H 0.15 4.79 7.29 -2.91 -0.02 4.77 16 37 H 0.10 5.68 6.23 -2.91 -0.02 5.66 16 Total: -1.00 -89.87 330.83 4.56 -85.31 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.40 Total: 27.86 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 5.56 Total: -22.03 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -3.10 Total: -93.56 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -0.33 Total: -43.89 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -89.87 4.56 -85.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357281586.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.835 kcal (2) G-P(sol) polarization free energy of solvation -89.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds