Wall clock time and date at job start Tue Mar 31 2020 13:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00368 * 2 1 4 4 H 1.48497 * 109.46978 * 270.00392 * 3 2 1 5 5 H 1.48502 * 109.46814 * 30.00296 * 3 2 1 6 6 H 1.48496 * 109.47325 * 150.00000 * 3 2 1 7 7 C 1.37881 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99793 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97705 * 124.98359 * 10 9 7 12 12 C 1.35238 * 107.86346 * 180.02562 * 11 10 9 13 13 C 1.40410 * 107.86643 * 359.97438 * 12 11 10 14 14 N 1.40158 * 125.97643 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99807 * 0.02562 * 14 13 12 16 16 O 1.21294 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00035 * 180.02562 * 15 14 13 18 18 S 1.81403 * 109.47064 * 179.97438 * 17 15 14 19 19 C 1.76204 * 102.99929 * 179.97438 * 18 17 15 20 20 N 1.31155 * 125.55560 * 359.69285 * 19 18 17 21 21 N 1.40423 * 106.90075 * 179.89101 * 20 19 18 22 22 H 0.96999 * 126.75937 * 180.14622 * 21 20 19 23 23 C 1.34761 * 106.47985 * 0.37103 * 21 20 19 24 24 O 1.35429 * 125.97081 * 179.75807 * 23 21 20 25 25 N 1.31410 * 108.06051 * 359.77103 * 23 21 20 26 26 N 1.31224 * 108.05286 * 359.97438 * 13 12 11 27 27 H 0.97008 * 119.99677 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47270 * 60.00059 * 9 7 2 29 29 H 1.08995 * 109.47054 * 299.99939 * 9 7 2 30 30 H 1.07999 * 126.06888 * 0.05322 * 11 10 9 31 31 H 1.07998 * 126.07029 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00507 * 179.97438 * 14 13 12 33 33 H 1.08999 * 109.46828 * 299.99542 * 17 15 14 34 34 H 1.09000 * 109.47349 * 60.00108 * 17 15 14 35 35 H 0.96703 * 113.99745 * 269.99056 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 2.2414 -4.6227 0.8930 12 6 3.2605 -5.4426 0.5492 13 6 3.8692 -4.9145 -0.6006 14 7 4.9660 -5.4645 -1.2780 15 6 5.5307 -6.6043 -0.8324 16 8 5.0901 -7.1537 0.1551 17 6 6.7103 -7.1954 -1.5605 18 16 7.2387 -8.7149 -0.7222 19 6 8.6023 -9.2532 -1.6997 20 7 9.0606 -8.6473 -2.7688 21 7 10.1474 -9.4055 -3.2335 22 1 10.6989 -9.2152 -4.0083 23 6 10.2699 -10.4525 -2.3938 24 8 11.1944 -11.4382 -2.4812 25 7 9.3354 -10.3499 -1.4757 26 7 3.2317 -3.8158 -0.9301 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8920 29 1 0.6240 -2.5574 0.8880 30 1 1.5762 -4.7532 1.7337 31 1 3.5541 -6.3436 1.0672 32 1 5.3182 -5.0254 -2.0680 33 1 6.4252 -7.4266 -2.5868 34 1 7.5315 -6.4786 -1.5641 35 1 10.9131 -12.1952 -3.0131 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361912256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:43 Heat of formation + Delta-G solvation = 110.538686 kcal Electronic energy + Delta-G solvation = -22764.459412 eV Core-core repulsion = 18928.978657 eV Total energy + Delta-G solvation = -3835.480754 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.60380 -40.75924 -39.33336 -38.28266 -34.89501 -33.41588 -33.15821 -31.59743 -31.07094 -29.90020 -29.33156 -26.60002 -23.88965 -23.31551 -22.82157 -21.80245 -20.34876 -20.01803 -19.66446 -18.26330 -17.28278 -16.84700 -16.72575 -16.59320 -16.58218 -15.90984 -15.33235 -14.97940 -14.38569 -14.27485 -14.17270 -13.95447 -13.76991 -13.15715 -12.81467 -12.37278 -12.26462 -12.08218 -11.80786 -11.25206 -11.12800 -11.07413 -10.91410 -10.56042 -10.51691 -10.35424 -10.27977 -10.15011 -9.75479 -9.53462 -8.65377 -8.20365 -8.05994 -7.53420 -6.26289 -4.31418 0.57099 0.77314 1.42985 1.88047 2.10523 2.13013 2.69024 2.86662 3.22671 3.28563 3.33548 3.36162 3.63585 3.75635 4.21927 4.30019 4.45794 4.63230 4.91268 5.05994 5.09034 5.46041 5.49397 5.74330 5.92163 6.16530 6.43366 6.50921 6.77038 6.82676 7.02400 7.23765 7.29581 7.46864 7.68200 7.85172 8.00196 8.04044 8.57465 8.77547 9.34330 10.82446 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.001948 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.363425 B =14366.922867 C =15029.609885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.317 5.317 11 C 0.053 3.947 12 C -0.286 4.286 13 C 0.255 3.745 14 N -0.622 5.622 15 C 0.541 3.459 16 O -0.500 6.500 17 C -0.159 4.159 18 S 0.126 5.874 19 C 0.206 3.794 20 N -0.302 5.302 21 N -0.479 5.479 22 H 0.443 0.557 23 C 0.466 3.534 24 O -0.440 6.440 25 N -0.508 5.508 26 N -0.301 5.301 27 H 0.267 0.733 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.414 0.586 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.245 -20.615 -7.595 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.099 5.099 11 C -0.097 4.097 12 C -0.317 4.317 13 C 0.002 3.998 14 N -0.270 5.270 15 C 0.324 3.676 16 O -0.374 6.374 17 C -0.311 4.311 18 S 0.351 5.649 19 C -0.183 4.183 20 N -0.141 5.141 21 N -0.210 5.210 22 H 0.289 0.711 23 C 0.148 3.852 24 O -0.241 6.241 25 N -0.248 5.248 26 N -0.133 5.133 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.186 0.814 31 H 0.179 0.821 32 H 0.249 0.751 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 17.243 -19.692 -6.401 26.946 hybrid contribution 1.675 0.728 -2.033 2.733 sum 18.918 -18.964 -8.434 28.083 Atomic orbital electron populations 1.69917 1.06037 1.27650 1.49673 1.24946 0.94991 0.99559 0.94579 0.86320 0.79668 0.82114 0.78354 1.20349 1.20971 1.19717 1.21249 0.93992 0.89359 1.52167 0.91290 1.19772 0.85597 0.81254 0.99362 1.49108 1.23084 1.19666 1.18021 1.22582 1.00263 0.90107 0.96759 1.21527 1.02040 1.06481 1.01666 1.19034 0.91385 0.94560 0.94842 1.42194 1.29793 1.24520 1.30460 1.19340 0.83263 0.80340 0.84646 1.90717 1.61951 1.59715 1.24988 1.23727 1.01292 1.01011 1.05101 1.86641 1.24754 1.24166 1.29309 1.26414 1.01926 0.93529 0.96452 1.78513 1.01664 1.18748 1.15125 1.48258 1.26506 1.20522 1.25715 0.71078 1.21274 0.89121 0.87012 0.87788 1.84876 1.35636 1.29038 1.74529 1.70851 1.07386 1.20438 1.26158 1.77337 1.03591 1.16118 1.16206 0.92305 0.93655 0.92429 0.81350 0.82125 0.75056 0.85507 0.85484 0.72337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.05 13.29 55.43 0.74 -24.32 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.53 9.24 -34.44 -0.32 -14.85 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.26 6.43 6.26 -5.19 -0.03 6.40 16 10 N -0.32 -7.20 3.67 -62.56 -0.23 -7.42 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.46 9.61 -39.83 -0.38 -5.84 16 13 C 0.25 4.88 8.11 -154.38 -1.25 3.63 16 14 N -0.62 -8.83 5.45 -11.13 -0.06 -8.89 16 15 C 0.54 7.05 7.82 -10.99 -0.09 6.97 16 16 O -0.50 -8.09 13.00 5.55 0.07 -8.01 16 17 C -0.16 -1.45 6.04 36.00 0.22 -1.23 16 18 S 0.13 1.37 21.30 -107.50 -2.29 -0.92 16 19 C 0.21 2.26 8.28 -90.95 -0.75 1.51 16 20 N -0.30 -2.92 12.34 30.14 0.37 -2.55 16 21 N -0.48 -3.20 7.45 29.39 0.22 -2.98 16 22 H 0.44 1.31 8.96 -182.35 -1.63 -0.33 16 23 C 0.47 3.60 9.54 -89.87 -0.86 2.74 16 24 O -0.44 -1.96 13.63 -17.98 -0.25 -2.20 16 25 N -0.51 -5.63 11.25 -14.97 -0.17 -5.80 16 26 N -0.30 -6.72 12.42 31.44 0.39 -6.33 16 27 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 30 H 0.17 2.66 8.06 -52.49 -0.42 2.23 16 31 H 0.16 2.95 5.92 -52.49 -0.31 2.64 16 32 H 0.41 4.59 8.82 -40.82 -0.36 4.23 16 33 H 0.13 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.13 0.95 8.14 -51.92 -0.42 0.52 16 35 H 0.42 -0.51 9.06 45.56 0.41 -0.10 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -36.30 335.86 -8.47 -44.77 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -3.55 Total: 1.69 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -3.76 Total: 1.75 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 1.26 Total: -58.29 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.17 Total: -10.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.29 Total: -0.92 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.30 -8.47 -44.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361912256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.307 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds