Wall clock time and date at job start Tue Mar 31 2020 13:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00368 * 2 1 4 4 H 1.48497 * 109.46978 * 270.00392 * 3 2 1 5 5 H 1.48502 * 109.46814 * 30.00296 * 3 2 1 6 6 H 1.48496 * 109.47325 * 150.00000 * 3 2 1 7 7 C 1.37881 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99742 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99793 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97705 * 124.98359 * 10 9 7 12 12 C 1.35238 * 107.86346 * 180.02562 * 11 10 9 13 13 C 1.40410 * 107.86643 * 359.97438 * 12 11 10 14 14 N 1.40158 * 125.97643 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99807 * 0.02562 * 14 13 12 16 16 O 1.21294 * 119.99808 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00035 * 180.02562 * 15 14 13 18 18 S 1.81403 * 109.47064 * 179.97438 * 17 15 14 19 19 C 1.76204 * 102.99929 * 179.97438 * 18 17 15 20 20 N 1.31155 * 125.55560 * 359.69285 * 19 18 17 21 21 N 1.40423 * 106.90075 * 179.89101 * 20 19 18 22 22 H 0.96999 * 126.75937 * 180.14622 * 21 20 19 23 23 C 1.34761 * 106.47985 * 0.37103 * 21 20 19 24 24 O 1.35429 * 125.97081 * 179.75807 * 23 21 20 25 25 N 1.31410 * 108.06051 * 359.77103 * 23 21 20 26 26 N 1.31224 * 108.05286 * 359.97438 * 13 12 11 27 27 H 0.97008 * 119.99677 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47270 * 60.00059 * 9 7 2 29 29 H 1.08995 * 109.47054 * 299.99939 * 9 7 2 30 30 H 1.07999 * 126.06888 * 0.05322 * 11 10 9 31 31 H 1.07998 * 126.07029 * 179.97438 * 12 11 10 32 32 H 0.96999 * 120.00507 * 179.97438 * 14 13 12 33 33 H 1.08999 * 109.46828 * 299.99542 * 17 15 14 34 34 H 1.09000 * 109.47349 * 60.00108 * 17 15 14 35 35 H 0.96703 * 113.99745 * 269.99056 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 2.2414 -4.6227 0.8930 12 6 3.2605 -5.4426 0.5492 13 6 3.8692 -4.9145 -0.6006 14 7 4.9660 -5.4645 -1.2780 15 6 5.5307 -6.6043 -0.8324 16 8 5.0901 -7.1537 0.1551 17 6 6.7103 -7.1954 -1.5605 18 16 7.2387 -8.7149 -0.7222 19 6 8.6023 -9.2532 -1.6997 20 7 9.0606 -8.6473 -2.7688 21 7 10.1474 -9.4055 -3.2335 22 1 10.6989 -9.2152 -4.0083 23 6 10.2699 -10.4525 -2.3938 24 8 11.1944 -11.4382 -2.4812 25 7 9.3354 -10.3499 -1.4757 26 7 3.2317 -3.8158 -0.9301 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5563 -0.8920 29 1 0.6240 -2.5574 0.8880 30 1 1.5762 -4.7532 1.7337 31 1 3.5541 -6.3436 1.0672 32 1 5.3182 -5.0254 -2.0680 33 1 6.4252 -7.4266 -2.5868 34 1 7.5315 -6.4786 -1.5641 35 1 10.9131 -12.1952 -3.0131 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361912256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:42 Heat of formation + Delta-G solvation = 79.937463 kcal Electronic energy + Delta-G solvation = -22765.786380 eV Core-core repulsion = 18928.978657 eV Total energy + Delta-G solvation = -3836.807723 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 324.079 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.23772 -42.22162 -40.60393 -38.69035 -36.28777 -35.29234 -33.79851 -33.05181 -31.94223 -31.07808 -30.77973 -28.42390 -25.06993 -24.53328 -23.61080 -23.02403 -21.89506 -21.01156 -20.52809 -18.93515 -18.68436 -18.30298 -17.99653 -17.64958 -17.31365 -17.01639 -16.89014 -16.14298 -15.75496 -15.48579 -15.24118 -14.93482 -14.47587 -14.36631 -14.35369 -14.00285 -13.81205 -13.58069 -12.92293 -12.73143 -12.59385 -12.28583 -12.07805 -11.88332 -11.86459 -11.64092 -11.39918 -11.27331 -11.06175 -11.01360 -10.71331 -9.76042 -9.13993 -8.83812 -8.32218 -6.46023 -0.21337 0.18175 0.77700 0.88263 1.24348 1.36384 1.39335 1.41235 1.43675 1.45985 1.52072 2.19956 2.28130 2.40486 2.93589 2.99819 3.37134 3.62069 3.96144 4.00137 4.24339 4.29100 4.50181 4.74952 4.80079 4.90926 4.94345 5.03649 5.14994 5.57689 5.68096 5.80758 5.91262 6.17748 6.29462 6.44543 6.62838 6.65596 6.89107 7.07986 7.23890 8.75390 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.031022 B = 0.001948 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.363425 B =14366.922867 C =15029.609885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.343 5.343 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.265 3.735 14 N -0.615 5.615 15 C 0.545 3.455 16 O -0.530 6.530 17 C -0.141 4.141 18 S 0.093 5.907 19 C 0.199 3.801 20 N -0.310 5.310 21 N -0.464 5.464 22 H 0.459 0.541 23 C 0.477 3.523 24 O -0.437 6.437 25 N -0.548 5.548 26 N -0.343 5.343 27 H 0.272 0.728 28 H 0.022 0.978 29 H 0.059 0.941 30 H 0.201 0.799 31 H 0.170 0.830 32 H 0.429 0.571 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.198 -21.091 -8.422 30.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.125 5.125 11 C -0.092 4.092 12 C -0.323 4.323 13 C 0.011 3.989 14 N -0.265 5.265 15 C 0.330 3.670 16 O -0.405 6.405 17 C -0.292 4.292 18 S 0.318 5.682 19 C -0.191 4.191 20 N -0.149 5.149 21 N -0.197 5.197 22 H 0.310 0.690 23 C 0.160 3.840 24 O -0.242 6.242 25 N -0.290 5.290 26 N -0.174 5.174 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.077 0.923 30 H 0.218 0.782 31 H 0.187 0.813 32 H 0.267 0.733 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 19.238 -20.212 -7.283 28.838 hybrid contribution 1.209 0.675 -1.821 2.288 sum 20.447 -19.536 -9.103 29.709 Atomic orbital electron populations 1.69995 1.07195 1.28732 1.49956 1.25735 0.95841 1.02708 0.93940 0.85349 0.78364 0.78181 0.78531 1.19792 1.19800 1.19740 1.21402 0.93407 0.90949 1.52763 0.92872 1.19350 0.85690 0.81496 0.98174 1.48844 1.23821 1.20275 1.19585 1.23181 1.00515 0.88826 0.96707 1.21737 1.02027 1.06684 1.01837 1.19371 0.91606 0.93360 0.94594 1.42298 1.28571 1.24887 1.30764 1.19957 0.83504 0.79343 0.84151 1.90700 1.62989 1.60367 1.26479 1.23622 0.99935 1.00375 1.05273 1.86741 1.25625 1.25375 1.30426 1.26213 1.02065 0.93923 0.96866 1.78413 1.02510 1.19201 1.14769 1.48144 1.25853 1.19819 1.25894 0.69049 1.21204 0.88390 0.87494 0.86944 1.84865 1.34688 1.29432 1.75223 1.70765 1.08875 1.21274 1.28040 1.77254 1.04685 1.18054 1.17375 0.91868 0.95979 0.92335 0.78245 0.81251 0.73265 0.82874 0.83195 0.69391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.79 13.29 21.45 0.28 -51.51 16 2 C 0.02 1.00 5.46 84.66 0.46 1.46 16 3 Si 0.97 43.29 29.54 68.60 2.03 45.32 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.55 -30.56 9.24 25.60 0.24 -30.33 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 13.93 6.26 85.63 0.54 14.47 16 10 N -0.34 -15.81 3.67 -351.85 -1.29 -17.10 16 11 C 0.06 2.16 11.43 83.52 0.96 3.12 16 12 C -0.29 -10.97 9.61 22.11 0.21 -10.76 16 13 C 0.27 10.06 8.11 133.32 1.08 11.14 16 14 N -0.62 -16.67 5.45 -307.51 -1.68 -18.34 16 15 C 0.54 13.40 7.82 87.66 0.69 14.09 16 16 O -0.53 -16.68 13.00 -3.07 -0.04 -16.72 16 17 C -0.14 -2.27 6.04 71.23 0.43 -1.84 16 18 S 0.09 1.94 21.30 -56.49 -1.20 0.74 16 19 C 0.20 4.11 8.28 180.46 1.49 5.60 16 20 N -0.31 -5.35 12.34 -58.57 -0.72 -6.07 16 21 N -0.46 -5.12 7.45 -172.64 -1.29 -6.41 16 22 H 0.46 1.48 8.96 -213.11 -1.91 -0.43 16 23 C 0.48 6.43 9.54 180.08 1.72 8.15 16 24 O -0.44 -2.82 13.63 -87.24 -1.19 -4.01 16 25 N -0.55 -11.51 11.25 -314.71 -3.54 -15.05 16 26 N -0.34 -15.44 12.42 -54.45 -0.68 -16.12 16 27 H 0.27 14.35 8.31 -92.70 -0.77 13.57 16 28 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.06 2.94 8.07 -2.39 -0.02 2.92 16 30 H 0.20 6.08 8.06 -2.91 -0.02 6.05 16 31 H 0.17 6.10 5.92 -2.91 -0.02 6.08 16 32 H 0.43 8.82 8.82 -92.71 -0.82 8.00 16 33 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.44 -2.28 9.06 -74.06 -0.67 -2.96 16 Total: -1.00 -78.91 335.86 -3.69 -82.60 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -2.19 Total: 7.59 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 7.81 Total: 15.09 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -8.91 Total: -130.60 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.23 Total: -20.73 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -1.20 Total: 0.74 kcal Total: -78.91 -3.69 -82.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361912256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.535 kcal (2) G-P(sol) polarization free energy of solvation -78.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds