Wall clock time and date at job start Tue Mar 31 2020 14:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47010 * 239.99544 * 3 2 1 5 5 H 1.48497 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 119.99862 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00107 * 161.48833 * 7 2 1 9 9 C 1.41401 * 120.00023 * 341.49411 * 7 2 1 10 10 C 1.40714 * 120.24188 * 335.87578 * 9 7 2 11 11 C 1.37618 * 119.74470 * 179.74536 * 10 9 7 12 12 C 1.38632 * 120.24580 * 0.53979 * 11 10 9 13 13 C 1.50706 * 119.75258 * 179.75596 * 12 11 10 14 14 N 1.46497 * 109.47534 * 269.98413 * 13 12 11 15 15 C 1.34745 * 120.04559 * 89.99117 * 14 13 12 16 16 N 1.30639 * 121.49368 * 179.97438 * 15 14 13 17 17 C 1.33519 * 121.50569 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.04379 * 180.02562 * 17 16 15 19 19 F 1.39906 * 109.46859 * 180.02562 * 18 17 16 20 20 F 1.39893 * 109.47092 * 300.00292 * 18 17 16 21 21 F 1.39903 * 109.46731 * 60.00581 * 18 17 16 22 22 C 1.36202 * 119.90858 * 0.02562 * 17 16 15 23 23 C 1.35020 * 120.03698 * 269.72620 * 14 13 12 24 24 O 1.21980 * 120.71073 * 359.97438 * 23 14 13 25 25 C 1.38635 * 120.50104 * 359.73944 * 12 11 10 26 26 C 1.37617 * 120.24896 * 359.97438 * 25 12 11 27 27 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.12991 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87952 * 180.27449 * 11 10 9 30 30 H 1.09007 * 109.46589 * 29.97854 * 13 12 11 31 31 H 1.08990 * 109.47136 * 149.97493 * 13 12 11 32 32 H 1.08001 * 119.24952 * 0.02562 * 15 14 13 33 33 H 1.07997 * 120.70509 * 179.97438 * 22 17 16 34 34 H 1.08002 * 119.87499 * 180.02562 * 25 12 11 35 35 H 1.08002 * 120.12491 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2363 -0.2964 9 6 1.3559 -2.4047 0.3898 10 6 0.2297 -2.3543 1.2318 11 6 -0.4003 -3.5211 1.6000 12 6 0.0775 -4.7436 1.1535 13 6 -0.6177 -6.0148 1.5681 14 7 -0.0248 -6.5125 2.8118 15 6 -0.5221 -6.1193 4.0008 16 7 -0.0156 -6.5458 5.1270 17 6 1.0182 -7.3904 5.1517 18 6 1.5761 -7.8618 6.4699 19 9 2.6465 -8.7325 6.2386 20 9 2.0225 -6.7605 7.2080 21 9 0.5775 -8.5299 7.1866 22 6 1.5679 -7.8253 3.9838 23 6 1.0172 -7.3700 2.7680 24 8 1.4753 -7.7396 1.6996 25 6 1.1898 -4.8055 0.3284 26 6 1.8320 -3.6511 -0.0572 27 1 -0.4850 0.8400 0.0004 28 1 -0.1417 -1.4033 1.5841 29 1 -1.2676 -3.4847 2.2425 30 1 -1.6776 -5.8145 1.7256 31 1 -0.5021 -6.7641 0.7850 32 1 -1.3587 -5.4368 4.0233 33 1 2.4046 -8.5082 3.9888 34 1 1.5531 -5.7632 -0.0138 35 1 2.6981 -3.7016 -0.7004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363761990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:50 Heat of formation + Delta-G solvation = -124.993877 kcal Electronic energy + Delta-G solvation = -26407.734904 eV Core-core repulsion = 21955.987592 eV Total energy + Delta-G solvation = -4451.747312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.35150 -47.89871 -47.78221 -41.88366 -37.97795 -37.63924 -35.68436 -33.84186 -31.59223 -30.80447 -29.49471 -28.27817 -26.58534 -24.87268 -24.12081 -22.57429 -21.19437 -20.29863 -19.28449 -18.82533 -18.70199 -17.72033 -17.47743 -17.07536 -16.28863 -16.06094 -15.44160 -14.81096 -14.69391 -14.42302 -14.34867 -14.23694 -14.04986 -13.95778 -13.95004 -13.88799 -13.71296 -13.08122 -12.75713 -12.67602 -12.16158 -12.01587 -11.85153 -11.50681 -11.20610 -11.07557 -10.68384 -10.46897 -10.34814 -10.21226 -9.79887 -9.58100 -9.30965 -8.64511 -7.69983 -7.57169 -6.98408 -4.57128 0.21053 1.61164 2.10705 2.29501 2.76133 2.90315 2.96014 2.98524 3.12267 3.29627 3.33229 3.62993 3.77960 4.18947 4.21665 4.38401 4.51467 4.80266 5.03776 5.24623 5.33368 5.46734 5.58557 5.80953 6.06967 6.19424 6.26554 6.45584 6.76317 6.87380 7.06042 7.14877 7.40528 7.46294 7.62794 7.76780 7.84399 7.86612 8.09560 8.42215 8.68055 8.75317 9.95336 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.003047 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.049903 B = 9187.226621 C = 9734.642646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.077 3.923 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.121 3.879 10 C -0.171 4.171 11 C -0.082 4.082 12 C -0.265 4.265 13 C 0.150 3.850 14 N -0.500 5.500 15 C 0.400 3.600 16 N -0.535 5.535 17 C 0.090 3.910 18 C 0.526 3.474 19 F -0.169 7.169 20 F -0.164 7.164 21 F -0.167 7.167 22 C -0.230 4.230 23 C 0.521 3.479 24 O -0.516 6.516 25 C -0.056 4.056 26 C -0.232 4.232 27 H 0.284 0.716 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.212 0.788 33 H 0.166 0.834 34 H 0.096 0.904 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 -9.694 9.352 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.118 3.882 10 C -0.190 4.190 11 C -0.101 4.101 12 C -0.267 4.267 13 C 0.031 3.969 14 N -0.214 5.214 15 C 0.116 3.884 16 N -0.259 5.259 17 C -0.033 4.033 18 C 0.470 3.530 19 F -0.151 7.151 20 F -0.146 7.146 21 F -0.148 7.148 22 C -0.256 4.256 23 C 0.318 3.682 24 O -0.392 6.392 25 C -0.075 4.075 26 C -0.252 4.252 27 H 0.095 0.905 28 H 0.137 0.863 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.229 0.771 33 H 0.184 0.816 34 H 0.114 0.886 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.030 -9.635 9.378 13.782 hybrid contribution 0.789 0.580 -0.493 1.097 sum -2.241 -9.055 8.885 12.882 Atomic orbital electron populations 1.69806 1.07707 1.29812 1.33341 1.25980 0.94779 1.01614 0.91932 0.86315 0.80223 0.79771 0.80241 1.18796 1.20113 1.18614 1.19700 0.98555 0.91388 1.38620 0.90137 1.17696 0.90707 0.92044 0.87792 1.21273 0.99526 0.96800 1.01381 1.20477 0.98045 0.92563 0.99003 1.18881 1.03824 0.91746 1.12240 1.20878 0.96320 0.96386 0.83308 1.47516 1.27792 1.35886 1.10223 1.24921 0.94098 0.90374 0.78967 1.67925 1.14240 1.17226 1.26506 1.20859 0.94389 0.95599 0.92442 1.17774 0.75736 0.75449 0.84008 1.93205 1.57035 1.70329 1.94482 1.93253 1.89458 1.53287 1.78554 1.93236 1.60917 1.80932 1.79711 1.22965 1.05268 1.06489 0.90908 1.16935 0.80552 0.79965 0.90716 1.90970 1.59489 1.57716 1.31031 1.20518 0.94133 0.96964 0.95857 1.20995 1.04068 0.92741 1.07363 0.90454 0.86283 0.89352 0.88932 0.88462 0.77137 0.81627 0.88637 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.85 10.98 55.55 0.61 -18.24 16 2 C 0.08 1.81 5.13 -17.34 -0.09 1.72 16 3 Si 0.91 17.64 29.60 -169.99 -5.03 12.61 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.45 -11.46 9.05 -37.74 -0.34 -11.81 16 8 H 0.08 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.12 3.04 5.58 -106.83 -0.60 2.44 16 10 C -0.17 -4.04 8.70 -38.87 -0.34 -4.38 16 11 C -0.08 -1.64 9.67 -39.66 -0.38 -2.02 16 12 C -0.26 -5.06 5.48 -104.33 -0.57 -5.63 16 13 C 0.15 2.16 5.50 -5.19 -0.03 2.13 16 14 N -0.50 -7.04 2.55 -122.40 -0.31 -7.36 16 15 C 0.40 4.70 11.48 -90.53 -1.04 3.66 16 16 N -0.54 -6.99 10.33 -10.70 -0.11 -7.10 16 17 C 0.09 1.19 6.21 -82.59 -0.51 0.68 16 18 C 0.53 6.40 3.50 36.01 0.13 6.53 16 19 F -0.17 -1.93 15.98 2.25 0.04 -1.89 16 20 F -0.16 -2.13 17.30 2.25 0.04 -2.09 16 21 F -0.17 -2.00 17.30 2.25 0.04 -1.96 16 22 C -0.23 -3.19 9.43 -39.26 -0.37 -3.56 16 23 C 0.52 8.40 7.45 -15.09 -0.11 8.29 16 24 O -0.52 -9.87 16.35 4.94 0.08 -9.79 16 25 C -0.06 -1.21 9.67 -39.66 -0.38 -1.59 16 26 C -0.23 -5.52 9.80 -38.88 -0.38 -5.91 16 27 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 28 H 0.12 2.92 6.16 -52.49 -0.32 2.60 16 29 H 0.09 1.45 8.06 -52.49 -0.42 1.02 16 30 H 0.09 1.00 7.96 -51.93 -0.41 0.58 16 31 H 0.10 1.46 7.39 -51.93 -0.38 1.07 16 32 H 0.21 1.62 8.03 -52.49 -0.42 1.20 16 33 H 0.17 2.04 7.17 -52.49 -0.38 1.66 16 34 H 0.10 2.01 7.62 -52.49 -0.40 1.61 16 35 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 324.97 15.07 4.90 4.90 Total: -1.00 -28.11 324.97 -7.49 -35.60 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -2.71 Total: 4.79 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -5.02 Total: -9.45 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.19 Total: -32.70 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 9 Polarization: -6.06 SS G_CDS: 0.11 Total: -5.95 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.11 -7.49 -35.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363761990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.395 kcal (2) G-P(sol) polarization free energy of solvation -28.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds