Wall clock time and date at job start Tue Mar 31 2020 14:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48497 * 109.47010 * 239.99544 * 3 2 1 5 5 H 1.48497 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47071 * 119.99862 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00107 * 161.48833 * 7 2 1 9 9 C 1.41401 * 120.00023 * 341.49411 * 7 2 1 10 10 C 1.40714 * 120.24188 * 335.87578 * 9 7 2 11 11 C 1.37618 * 119.74470 * 179.74536 * 10 9 7 12 12 C 1.38632 * 120.24580 * 0.53979 * 11 10 9 13 13 C 1.50706 * 119.75258 * 179.75596 * 12 11 10 14 14 N 1.46497 * 109.47534 * 269.98413 * 13 12 11 15 15 C 1.34745 * 120.04559 * 89.99117 * 14 13 12 16 16 N 1.30639 * 121.49368 * 179.97438 * 15 14 13 17 17 C 1.33519 * 121.50569 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.04379 * 180.02562 * 17 16 15 19 19 F 1.39906 * 109.46859 * 180.02562 * 18 17 16 20 20 F 1.39893 * 109.47092 * 300.00292 * 18 17 16 21 21 F 1.39903 * 109.46731 * 60.00581 * 18 17 16 22 22 C 1.36202 * 119.90858 * 0.02562 * 17 16 15 23 23 C 1.35020 * 120.03698 * 269.72620 * 14 13 12 24 24 O 1.21980 * 120.71073 * 359.97438 * 23 14 13 25 25 C 1.38635 * 120.50104 * 359.73944 * 12 11 10 26 26 C 1.37617 * 120.24896 * 359.97438 * 25 12 11 27 27 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.12991 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87952 * 180.27449 * 11 10 9 30 30 H 1.09007 * 109.46589 * 29.97854 * 13 12 11 31 31 H 1.08990 * 109.47136 * 149.97493 * 13 12 11 32 32 H 1.08001 * 119.24952 * 0.02562 * 15 14 13 33 33 H 1.07997 * 120.70509 * 179.97438 * 22 17 16 34 34 H 1.08002 * 119.87499 * 180.02562 * 25 12 11 35 35 H 1.08002 * 120.12491 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2363 -0.2964 9 6 1.3559 -2.4047 0.3898 10 6 0.2297 -2.3543 1.2318 11 6 -0.4003 -3.5211 1.6000 12 6 0.0775 -4.7436 1.1535 13 6 -0.6177 -6.0148 1.5681 14 7 -0.0248 -6.5125 2.8118 15 6 -0.5221 -6.1193 4.0008 16 7 -0.0156 -6.5458 5.1270 17 6 1.0182 -7.3904 5.1517 18 6 1.5761 -7.8618 6.4699 19 9 2.6465 -8.7325 6.2386 20 9 2.0225 -6.7605 7.2080 21 9 0.5775 -8.5299 7.1866 22 6 1.5679 -7.8253 3.9838 23 6 1.0172 -7.3700 2.7680 24 8 1.4753 -7.7396 1.6996 25 6 1.1898 -4.8055 0.3284 26 6 1.8320 -3.6511 -0.0572 27 1 -0.4850 0.8400 0.0004 28 1 -0.1417 -1.4033 1.5841 29 1 -1.2676 -3.4847 2.2425 30 1 -1.6776 -5.8145 1.7256 31 1 -0.5021 -6.7641 0.7850 32 1 -1.3587 -5.4368 4.0233 33 1 2.4046 -8.5082 3.9888 34 1 1.5531 -5.7632 -0.0138 35 1 2.6981 -3.7016 -0.7004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363761990.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:50 Heat of formation + Delta-G solvation = -138.390466 kcal Electronic energy + Delta-G solvation = -26408.315823 eV Core-core repulsion = 21955.987592 eV Total energy + Delta-G solvation = -4452.328232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.32464 -48.85621 -48.77093 -43.01332 -39.55412 -38.92562 -36.96884 -35.49251 -32.74856 -32.31487 -31.21302 -29.62990 -27.92501 -25.96742 -25.56765 -23.72910 -22.91739 -21.91972 -20.33277 -19.84038 -19.68157 -19.27845 -18.76613 -18.24406 -17.58124 -17.11635 -17.07073 -15.94140 -15.85334 -15.68289 -15.56757 -15.50607 -15.39708 -15.20305 -15.04767 -14.92660 -14.77362 -14.37345 -14.24252 -13.85423 -13.71288 -13.52513 -13.33564 -13.10667 -12.75289 -12.58325 -12.32997 -11.89012 -11.52785 -11.43056 -11.33958 -11.27108 -11.02511 -9.82146 -9.43078 -9.32975 -8.71559 -6.41388 -0.84014 0.52127 0.72107 1.11035 1.19431 1.36110 1.39688 1.47896 1.65331 2.17732 2.22145 2.30889 2.63091 2.68125 3.20104 3.28214 3.48357 3.64883 3.85924 3.98473 4.12870 4.18968 4.28446 4.49899 4.54310 4.65555 4.98776 5.09911 5.15515 5.26564 5.36299 5.42426 5.64874 5.89793 6.04323 6.12603 6.34546 6.41881 6.58511 6.64250 6.88072 6.96735 8.24822 Molecular weight = 324.08amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.003047 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.049903 B = 9187.226621 C = 9734.642646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.042 3.958 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.501 4.501 8 H 0.069 0.931 9 C 0.089 3.911 10 C -0.194 4.194 11 C -0.072 4.072 12 C -0.243 4.243 13 C 0.155 3.845 14 N -0.501 5.501 15 C 0.408 3.592 16 N -0.543 5.543 17 C 0.097 3.903 18 C 0.531 3.469 19 F -0.165 7.165 20 F -0.168 7.168 21 F -0.163 7.163 22 C -0.241 4.241 23 C 0.512 3.488 24 O -0.557 6.557 25 C -0.067 4.067 26 C -0.258 4.258 27 H 0.292 0.708 28 H 0.107 0.893 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.092 0.908 32 H 0.261 0.739 33 H 0.174 0.826 34 H 0.096 0.904 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.935 -9.915 11.120 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.174 4.174 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.530 4.530 8 H 0.087 0.913 9 C 0.087 3.913 10 C -0.214 4.214 11 C -0.091 4.091 12 C -0.245 4.245 13 C 0.036 3.964 14 N -0.214 5.214 15 C 0.126 3.874 16 N -0.266 5.266 17 C -0.027 4.027 18 C 0.476 3.524 19 F -0.146 7.146 20 F -0.150 7.150 21 F -0.145 7.145 22 C -0.267 4.267 23 C 0.310 3.690 24 O -0.436 6.436 25 C -0.086 4.086 26 C -0.278 4.278 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.156 0.844 30 H 0.165 0.835 31 H 0.110 0.890 32 H 0.277 0.723 33 H 0.192 0.808 34 H 0.114 0.886 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.076 -9.863 11.174 15.745 hybrid contribution 1.348 0.436 -0.951 1.706 sum -3.729 -9.427 10.223 14.397 Atomic orbital electron populations 1.69823 1.08708 1.30986 1.34046 1.26667 0.95541 1.04163 0.91066 0.85310 0.78991 0.75909 0.79914 1.18772 1.18541 1.18685 1.19875 0.98565 0.93002 1.41552 0.91286 1.18007 0.92013 0.92393 0.88913 1.21327 0.99973 0.97899 1.02181 1.20910 0.98628 0.91186 0.98325 1.19337 1.01914 0.93948 1.09328 1.20918 0.98395 0.93545 0.83519 1.47316 1.27479 1.35664 1.10961 1.25923 0.94294 0.89689 0.77474 1.68012 1.14190 1.17237 1.27132 1.21002 0.94085 0.95024 0.92580 1.17630 0.75830 0.75398 0.83583 1.93220 1.56817 1.70121 1.94426 1.93248 1.89515 1.53595 1.78596 1.93245 1.60823 1.80825 1.79576 1.22938 1.06036 1.07390 0.90381 1.17260 0.80826 0.80141 0.90738 1.90951 1.60917 1.59407 1.32373 1.20707 0.95169 0.96072 0.96657 1.21108 1.04670 0.93611 1.08376 0.89684 0.87530 0.84354 0.83492 0.88987 0.72340 0.80818 0.88619 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.65 10.98 21.83 0.24 -39.41 16 2 C 0.04 2.05 5.13 85.26 0.44 2.49 16 3 Si 0.98 36.76 29.60 68.60 2.03 38.79 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.50 -26.60 9.05 23.46 0.21 -26.39 16 8 H 0.07 3.62 7.91 -2.92 -0.02 3.60 16 9 C 0.09 4.67 5.58 -21.29 -0.12 4.55 16 10 C -0.19 -9.20 8.70 22.73 0.20 -9.00 16 11 C -0.07 -2.66 9.67 22.22 0.21 -2.45 16 12 C -0.24 -8.70 5.48 -19.67 -0.11 -8.81 16 13 C 0.16 3.84 5.50 85.64 0.47 4.31 16 14 N -0.50 -12.35 2.55 -659.13 -1.68 -14.03 16 15 C 0.41 7.64 11.48 180.32 2.07 9.71 16 16 N -0.54 -12.21 10.33 -187.75 -1.94 -14.14 16 17 C 0.10 2.33 6.21 41.83 0.26 2.59 16 18 C 0.53 11.84 3.50 71.24 0.25 12.09 16 19 F -0.16 -3.49 15.98 44.97 0.72 -2.77 16 20 F -0.17 -4.04 17.30 44.97 0.78 -3.26 16 21 F -0.16 -3.55 17.30 44.97 0.78 -2.77 16 22 C -0.24 -6.33 9.43 22.48 0.21 -6.12 16 23 C 0.51 15.68 7.45 84.89 0.63 16.31 16 24 O -0.56 -21.13 16.35 -5.25 -0.09 -21.21 16 25 C -0.07 -2.92 9.67 22.22 0.21 -2.71 16 26 C -0.26 -12.83 9.80 22.73 0.22 -12.61 16 27 H 0.29 12.81 8.30 -92.71 -0.77 12.04 16 28 H 0.11 5.26 6.16 -2.91 -0.02 5.24 16 29 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 30 H 0.15 2.14 7.96 -2.38 -0.02 2.12 16 31 H 0.09 2.48 7.39 -2.39 -0.02 2.46 16 32 H 0.26 2.12 8.03 -2.91 -0.02 2.10 16 33 H 0.17 4.13 7.17 -2.91 -0.02 4.11 16 34 H 0.10 4.11 7.62 -2.91 -0.02 4.08 16 35 H 0.08 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -64.99 324.97 7.16 -57.83 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.16 Total: 17.02 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: 5.17 Total: -16.04 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -3.38 Total: -67.59 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.09 Total: -21.21 kcal Atomic # 9 Polarization: -11.08 SS G_CDS: 2.27 Total: -8.80 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 2.03 Total: 38.79 kcal Total: -64.99 7.16 -57.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363761990.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.563 kcal (2) G-P(sol) polarization free energy of solvation -64.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds