Wall clock time and date at job start Tue Mar 31 2020 14:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86804 * 119.99879 * 2 1 4 4 H 1.48501 * 109.47299 * 269.99604 * 3 2 1 5 5 H 1.48498 * 109.47244 * 29.99835 * 3 2 1 6 6 H 1.48507 * 109.46914 * 149.99751 * 3 2 1 7 7 C 1.39940 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00086 * 197.84875 * 7 2 1 9 9 C 1.41395 * 120.00190 * 17.84754 * 7 2 1 10 10 C 1.40735 * 120.24236 * 24.39490 * 9 7 2 11 11 C 1.37593 * 119.74249 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.25051 * 359.74708 * 11 10 9 13 13 C 1.38616 * 120.50350 * 0.51241 * 12 11 10 14 14 S 1.76196 * 119.87845 * 179.76288 * 13 12 11 15 15 O 1.42099 * 106.40086 * 156.18511 * 14 13 12 16 16 O 1.42101 * 106.40398 * 23.26390 * 14 13 12 17 17 N 1.65606 * 107.21994 * 269.72472 * 14 13 12 18 18 C 1.47743 * 125.82242 * 269.90885 * 17 14 13 19 19 C 1.54905 * 104.83940 * 155.82738 * 18 17 14 20 20 C 1.55153 * 101.58132 * 37.09626 * 19 18 17 21 21 C 1.47022 * 125.64429 * 90.00003 * 17 14 13 22 22 H 1.08994 * 109.88533 * 300.59547 * 21 17 14 23 23 C 1.50699 * 109.88442 * 61.61146 * 21 17 14 24 24 N 1.34768 * 119.99823 * 179.67962 * 23 21 17 25 25 O 1.21280 * 119.99638 * 359.68303 * 23 21 17 26 26 C 1.37640 * 120.24164 * 359.49051 * 13 12 11 27 27 H 0.97008 * 119.99649 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.12493 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87510 * 180.02562 * 11 10 9 30 30 H 1.08009 * 119.75217 * 180.25326 * 12 11 10 31 31 H 1.09007 * 110.28818 * 37.02328 * 18 17 14 32 32 H 1.09000 * 110.52853 * 274.75430 * 18 17 14 33 33 H 1.08999 * 111.00562 * 279.01532 * 19 18 17 34 34 H 1.09005 * 111.03615 * 155.18269 * 19 18 17 35 35 H 1.09005 * 110.71739 * 206.13199 * 20 19 18 36 36 H 1.08998 * 110.87539 * 82.93340 * 20 19 18 37 37 H 0.97008 * 119.99879 * 179.97438 * 24 23 21 38 38 H 0.97000 * 120.00774 * 359.72525 * 24 23 21 39 39 H 1.08000 * 120.12314 * 180.23450 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3520 -2.4072 -0.3742 10 6 0.2206 -2.3628 -1.2101 11 6 -0.4094 -3.5322 -1.5687 12 6 0.0695 -4.7514 -1.1142 13 6 1.1798 -4.8068 -0.2863 14 16 1.7707 -6.3647 0.2867 15 8 3.1440 -6.1816 0.6022 16 8 1.3095 -7.3354 -0.6429 17 7 1.0008 -6.6849 1.7176 18 6 1.4791 -6.3007 3.0617 19 6 0.2022 -6.2484 3.9371 20 6 -0.6151 -7.4378 3.3674 21 6 -0.2744 -7.4020 1.8626 22 1 -1.0589 -6.8774 1.3174 23 6 -0.1354 -8.8068 1.3351 24 7 -1.1868 -9.6488 1.3754 25 8 0.9228 -9.1795 0.8744 26 6 1.8258 -3.6496 0.0854 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1511 -1.4145 -1.5692 29 1 -1.2775 -3.5007 -2.2104 30 1 -0.4288 -5.6648 -1.4041 31 1 1.9561 -5.3211 3.0274 32 1 2.1736 -7.0468 3.4479 33 1 -0.3289 -5.3068 3.7976 34 1 0.4419 -6.4071 4.9886 35 1 -1.6825 -7.2828 3.5249 36 1 -0.2936 -8.3789 3.8133 37 1 -1.0975 -10.5530 1.0355 38 1 -2.0320 -9.3520 1.7475 39 1 2.6930 -3.6953 0.7275 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363969824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:38 Heat of formation + Delta-G solvation = -89.360236 kcal Electronic energy + Delta-G solvation = -25965.758777 eV Core-core repulsion = 22192.857347 eV Total energy + Delta-G solvation = -3772.901430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.95202 -37.63010 -37.39093 -36.44718 -35.08585 -33.84722 -33.69173 -30.81807 -30.07507 -29.76168 -29.40063 -25.48115 -23.52799 -21.88178 -21.52528 -20.97952 -20.61138 -18.76660 -18.20730 -17.24517 -17.07330 -16.70414 -15.87206 -15.47060 -15.21668 -14.74712 -14.67889 -14.49893 -13.77305 -13.67244 -13.45557 -13.33601 -13.14486 -12.63068 -12.56493 -11.90669 -11.85412 -11.50958 -11.41316 -11.37267 -11.29787 -11.26907 -11.15553 -10.97277 -10.94554 -10.86098 -10.60627 -9.99231 -9.74404 -9.63542 -9.53558 -9.35897 -8.77351 -8.02296 -7.70477 -6.93359 -4.53865 1.02789 2.22531 2.63085 2.73206 2.99570 3.03921 3.06809 3.36331 3.65576 3.82638 4.32257 4.36463 4.43002 4.59186 4.76732 5.02549 5.08213 5.19279 5.40425 5.45065 5.54545 5.73429 5.74459 5.77435 6.02992 6.13100 6.17314 6.21179 6.46325 6.65697 6.76532 6.79567 6.92909 7.04854 7.22500 7.31524 7.39886 7.72999 7.81216 7.94529 8.32877 8.40447 8.66839 8.72110 10.02084 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.003970 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.630495 B = 7051.920315 C = 7281.017005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.148 4.148 13 C -0.636 4.636 14 S 2.705 3.295 15 O -0.967 6.967 16 O -0.950 6.950 17 N -0.993 5.993 18 C 0.120 3.880 19 C -0.129 4.129 20 C -0.118 4.118 21 C 0.134 3.866 22 H 0.104 0.896 23 C 0.501 3.499 24 N -0.858 5.858 25 O -0.510 6.510 26 C -0.126 4.126 27 H 0.283 0.717 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.400 0.600 38 H 0.399 0.601 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 -9.916 8.327 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.139 4.139 11 C -0.140 4.140 12 C -0.170 4.170 13 C -0.727 4.727 14 S 2.802 3.198 15 O -0.957 6.957 16 O -0.940 6.940 17 N -0.828 5.828 18 C -0.005 4.005 19 C -0.168 4.168 20 C -0.157 4.157 21 C 0.023 3.977 22 H 0.121 0.879 23 C 0.283 3.717 24 N -0.423 5.423 25 O -0.383 6.383 26 C -0.147 4.147 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.231 0.769 38 H 0.227 0.773 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.702 -10.348 7.604 14.050 hybrid contribution -0.645 1.250 -0.060 1.408 sum -6.347 -9.098 7.544 13.415 Atomic orbital electron populations 1.69784 1.07650 1.29572 1.34997 1.25925 0.94776 1.01513 0.91999 0.86248 0.80548 0.80141 0.79500 1.19148 1.20211 1.18394 1.19636 0.98401 0.90965 1.40009 0.89876 1.17686 0.91773 0.91974 0.89694 1.21631 0.97665 0.97127 0.97428 1.20803 0.99390 0.93135 1.00698 1.20058 0.97196 0.97182 1.02522 1.30028 1.09761 1.18671 1.14270 1.01450 0.72996 0.74016 0.71375 1.93505 1.30942 1.87465 1.83821 1.93542 1.81763 1.58791 1.59931 1.58732 1.33593 1.68964 1.21518 1.22055 0.96408 1.01002 0.81021 1.22804 0.95888 0.98756 0.99341 1.22617 1.01429 1.00081 0.91583 1.21180 0.88042 0.89766 0.98726 0.87883 1.21048 0.84233 0.88068 0.78389 1.43734 1.14569 1.16759 1.67234 1.90789 1.27581 1.76916 1.43022 1.20781 1.00408 0.91643 1.01889 0.90614 0.85733 0.88415 0.87804 0.89757 0.91315 0.89714 0.89703 0.89274 0.90278 0.76888 0.77318 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.44 10.95 55.55 0.61 -18.83 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 7 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 8 H 0.08 2.07 7.91 -52.48 -0.41 1.65 16 9 C 0.09 2.40 5.57 -106.83 -0.60 1.81 16 10 C -0.12 -2.97 8.70 -38.87 -0.34 -3.31 16 11 C -0.12 -2.74 10.02 -39.66 -0.40 -3.14 16 12 C -0.15 -3.32 9.53 -39.29 -0.37 -3.69 16 13 C -0.64 -14.56 5.97 -39.66 -0.24 -14.80 16 14 S 2.70 57.33 5.58 -107.50 -0.60 56.73 16 15 O -0.97 -22.68 16.86 -57.17 -0.96 -23.64 16 16 O -0.95 -21.86 14.12 -66.58 -0.94 -22.80 16 17 N -0.99 -16.45 3.14 -105.40 -0.33 -16.78 16 18 C 0.12 1.63 7.01 -2.36 -0.02 1.61 16 19 C -0.13 -1.24 7.08 -24.59 -0.17 -1.41 16 20 C -0.12 -1.01 6.38 -24.90 -0.16 -1.17 16 21 C 0.13 1.74 3.46 -68.11 -0.24 1.50 16 22 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 23 C 0.50 7.14 6.78 -10.99 -0.07 7.07 16 24 N -0.86 -7.62 8.80 31.22 0.27 -7.34 16 25 O -0.51 -9.99 14.70 -17.42 -0.26 -10.25 16 26 C -0.13 -3.10 9.26 -38.87 -0.36 -3.46 16 27 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 28 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 29 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.10 2.11 7.59 -52.48 -0.40 1.71 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.61 7.84 -51.93 -0.41 0.21 16 37 H 0.40 3.19 8.93 -40.82 -0.36 2.83 16 38 H 0.40 2.04 8.80 -40.82 -0.36 1.68 16 39 H 0.11 2.61 7.60 -52.49 -0.40 2.22 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -35.20 339.08 -10.28 -45.48 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -4.76 Total: 8.81 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -3.39 Total: -29.45 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.55 Total: -42.95 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -2.16 Total: -56.69 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Atomic # 16 Polarization: 57.33 SS G_CDS: -0.60 Total: 56.73 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.20 -10.28 -45.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363969824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.878 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds