Wall clock time and date at job start Tue Mar 31 2020 14:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86804 * 119.99879 * 2 1 4 4 H 1.48501 * 109.47299 * 269.99604 * 3 2 1 5 5 H 1.48498 * 109.47244 * 29.99835 * 3 2 1 6 6 H 1.48507 * 109.46914 * 149.99751 * 3 2 1 7 7 C 1.39940 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00086 * 197.84875 * 7 2 1 9 9 C 1.41395 * 120.00190 * 17.84754 * 7 2 1 10 10 C 1.40735 * 120.24236 * 24.39490 * 9 7 2 11 11 C 1.37593 * 119.74249 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.25051 * 359.74708 * 11 10 9 13 13 C 1.38616 * 120.50350 * 0.51241 * 12 11 10 14 14 S 1.76196 * 119.87845 * 179.76288 * 13 12 11 15 15 O 1.42099 * 106.40086 * 156.18511 * 14 13 12 16 16 O 1.42101 * 106.40398 * 23.26390 * 14 13 12 17 17 N 1.65606 * 107.21994 * 269.72472 * 14 13 12 18 18 C 1.47743 * 125.82242 * 269.90885 * 17 14 13 19 19 C 1.54905 * 104.83940 * 155.82738 * 18 17 14 20 20 C 1.55153 * 101.58132 * 37.09626 * 19 18 17 21 21 C 1.47022 * 125.64429 * 90.00003 * 17 14 13 22 22 H 1.08994 * 109.88533 * 300.59547 * 21 17 14 23 23 C 1.50699 * 109.88442 * 61.61146 * 21 17 14 24 24 N 1.34768 * 119.99823 * 179.67962 * 23 21 17 25 25 O 1.21280 * 119.99638 * 359.68303 * 23 21 17 26 26 C 1.37640 * 120.24164 * 359.49051 * 13 12 11 27 27 H 0.97008 * 119.99649 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.12493 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.87510 * 180.02562 * 11 10 9 30 30 H 1.08009 * 119.75217 * 180.25326 * 12 11 10 31 31 H 1.09007 * 110.28818 * 37.02328 * 18 17 14 32 32 H 1.09000 * 110.52853 * 274.75430 * 18 17 14 33 33 H 1.08999 * 111.00562 * 279.01532 * 19 18 17 34 34 H 1.09005 * 111.03615 * 155.18269 * 19 18 17 35 35 H 1.09005 * 110.71739 * 206.13199 * 20 19 18 36 36 H 1.08998 * 110.87539 * 82.93340 * 20 19 18 37 37 H 0.97008 * 119.99879 * 179.97438 * 24 23 21 38 38 H 0.97000 * 120.00774 * 359.72525 * 24 23 21 39 39 H 1.08000 * 120.12314 * 180.23450 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3520 -2.4072 -0.3742 10 6 0.2206 -2.3628 -1.2101 11 6 -0.4094 -3.5322 -1.5687 12 6 0.0695 -4.7514 -1.1142 13 6 1.1798 -4.8068 -0.2863 14 16 1.7707 -6.3647 0.2867 15 8 3.1440 -6.1816 0.6022 16 8 1.3095 -7.3354 -0.6429 17 7 1.0008 -6.6849 1.7176 18 6 1.4791 -6.3007 3.0617 19 6 0.2022 -6.2484 3.9371 20 6 -0.6151 -7.4378 3.3674 21 6 -0.2744 -7.4020 1.8626 22 1 -1.0589 -6.8774 1.3174 23 6 -0.1354 -8.8068 1.3351 24 7 -1.1868 -9.6488 1.3754 25 8 0.9228 -9.1795 0.8744 26 6 1.8258 -3.6496 0.0854 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1511 -1.4145 -1.5692 29 1 -1.2775 -3.5007 -2.2104 30 1 -0.4288 -5.6648 -1.4041 31 1 1.9561 -5.3211 3.0274 32 1 2.1736 -7.0468 3.4479 33 1 -0.3289 -5.3068 3.7976 34 1 0.4419 -6.4071 4.9886 35 1 -1.6825 -7.2828 3.5249 36 1 -0.2936 -8.3789 3.8133 37 1 -1.0975 -10.5530 1.0355 38 1 -2.0320 -9.3520 1.7475 39 1 2.6930 -3.6953 0.7275 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363969824.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:38 Heat of formation + Delta-G solvation = -116.049757 kcal Electronic energy + Delta-G solvation = -25966.916121 eV Core-core repulsion = 22192.857347 eV Total energy + Delta-G solvation = -3774.058774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.01151 -39.47831 -38.51613 -38.14413 -36.84414 -35.68995 -34.68427 -31.94442 -31.85056 -31.59413 -30.36787 -27.36587 -24.58298 -23.64362 -22.84671 -22.44096 -21.71244 -20.24419 -19.70355 -18.70399 -18.26621 -17.75095 -17.64999 -16.98341 -16.72130 -16.49275 -16.03540 -15.67005 -15.31313 -15.11483 -14.86408 -14.70650 -14.34173 -14.17238 -13.74986 -13.58792 -13.31401 -13.15054 -13.09084 -13.03186 -12.81588 -12.78068 -12.63063 -12.58116 -12.21699 -12.10882 -11.72649 -11.57347 -11.38296 -11.16084 -11.02642 -10.56426 -10.06637 -9.85106 -9.59442 -8.74791 -6.47373 -0.59283 0.37226 0.81305 1.37656 1.46191 1.50451 1.68314 2.04752 2.17588 2.54978 2.56590 2.92435 3.20825 3.45650 3.54483 3.80803 4.02191 4.15899 4.25079 4.28911 4.39587 4.56675 4.71271 4.80011 4.85795 4.89274 4.92803 4.96161 5.05085 5.13266 5.17834 5.34061 5.37977 5.44647 5.54532 5.85085 5.90998 5.98218 6.07833 6.49806 6.52740 6.77088 6.82166 7.42973 8.23212 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.020043 B = 0.003970 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.630495 B = 7051.920315 C = 7281.017005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.042 3.958 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.077 0.923 9 C 0.066 3.934 10 C -0.139 4.139 11 C -0.119 4.119 12 C -0.150 4.150 13 C -0.639 4.639 14 S 2.724 3.276 15 O -1.000 7.000 16 O -0.969 6.969 17 N -0.995 5.995 18 C 0.103 3.897 19 C -0.119 4.119 20 C -0.104 4.104 21 C 0.119 3.881 22 H 0.117 0.883 23 C 0.495 3.505 24 N -0.830 5.830 25 O -0.574 6.574 26 C -0.149 4.149 27 H 0.293 0.707 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.408 0.592 38 H 0.421 0.579 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 -10.146 9.726 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.175 4.175 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.063 3.937 10 C -0.159 4.159 11 C -0.138 4.138 12 C -0.170 4.170 13 C -0.729 4.729 14 S 2.819 3.181 15 O -0.990 6.990 16 O -0.960 6.960 17 N -0.834 5.834 18 C -0.021 4.021 19 C -0.158 4.158 20 C -0.143 4.143 21 C 0.009 3.991 22 H 0.135 0.865 23 C 0.277 3.723 24 N -0.395 5.395 25 O -0.452 6.452 26 C -0.170 4.170 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.239 0.761 38 H 0.253 0.747 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.056 -10.584 9.006 16.064 hybrid contribution -0.040 1.191 -0.444 1.272 sum -8.097 -9.393 8.562 15.070 Atomic orbital electron populations 1.69799 1.08803 1.31093 1.34523 1.26700 0.95560 1.04290 0.90924 0.85192 0.79112 0.75783 0.79628 1.18712 1.18632 1.18468 1.19858 0.98520 0.92287 1.42015 0.90519 1.18026 0.92625 0.92683 0.90367 1.21656 0.98172 0.97752 0.98321 1.21140 0.99909 0.92387 1.00322 1.20399 0.96888 0.98034 1.01720 1.30376 1.09436 1.19133 1.13908 1.00640 0.72413 0.72988 0.72040 1.93450 1.33355 1.87651 1.84589 1.93507 1.81966 1.58739 1.61747 1.58355 1.35084 1.69059 1.20877 1.22400 0.98936 1.00332 0.80420 1.22818 0.93555 0.99280 1.00136 1.22732 1.03724 1.00178 0.87693 1.21685 0.86434 0.88758 1.02244 0.86529 1.21348 0.84247 0.88943 0.77718 1.43496 1.14221 1.16369 1.65462 1.90770 1.30154 1.78107 1.46177 1.20812 1.01042 0.92197 1.02969 0.89563 0.86520 0.85160 0.85501 0.91323 0.90800 0.89957 0.86571 0.85107 0.88925 0.76063 0.74745 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.14 10.95 21.82 0.24 -39.90 16 2 C 0.04 2.01 5.14 85.26 0.44 2.45 16 3 Si 0.98 36.82 29.59 68.60 2.03 38.85 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 5 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 6 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 7 C -0.50 -26.56 9.05 23.46 0.21 -26.34 16 8 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 9 C 0.07 3.58 5.57 -21.29 -0.12 3.46 16 10 C -0.14 -7.10 8.70 22.73 0.20 -6.90 16 11 C -0.12 -5.32 10.02 22.22 0.22 -5.09 16 12 C -0.15 -6.62 9.53 22.46 0.21 -6.40 16 13 C -0.64 -29.87 5.97 22.22 0.13 -29.74 16 14 S 2.72 118.14 5.58 -56.49 -0.31 117.82 16 15 O -1.00 -49.04 16.86 -128.00 -2.16 -51.20 16 16 O -0.97 -45.17 14.12 -119.00 -1.68 -46.85 16 17 N -1.00 -32.63 3.14 -487.38 -1.53 -34.16 16 18 C 0.10 2.75 7.01 86.79 0.61 3.36 16 19 C -0.12 -1.93 7.08 31.98 0.23 -1.71 16 20 C -0.10 -1.36 6.38 31.78 0.20 -1.15 16 21 C 0.12 2.81 3.46 44.59 0.15 2.97 16 22 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 23 C 0.49 13.26 6.78 87.66 0.59 13.86 16 24 N -0.83 -12.33 8.80 -173.54 -1.53 -13.86 16 25 O -0.57 -22.47 14.70 18.94 0.28 -22.19 16 26 C -0.15 -7.67 9.26 22.73 0.21 -7.46 16 27 H 0.29 12.86 8.30 -92.70 -0.77 12.09 16 28 H 0.12 6.04 6.16 -2.91 -0.02 6.02 16 29 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 30 H 0.13 4.97 7.59 -2.91 -0.02 4.94 16 31 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.13 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.09 1.02 7.84 -2.39 -0.02 1.00 16 37 H 0.41 5.50 8.93 -92.70 -0.83 4.67 16 38 H 0.42 2.58 8.80 -92.71 -0.82 1.76 16 39 H 0.10 5.31 7.60 -2.91 -0.02 5.28 16 Total: -1.00 -80.54 339.08 -1.90 -82.45 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.54 Total: 27.75 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 3.30 Total: -58.71 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -2.82 Total: -87.92 kcal Atomic # 8 Polarization: -116.68 SS G_CDS: -3.56 Total: -120.24 kcal Atomic # 14 Polarization: 36.82 SS G_CDS: 2.03 Total: 38.85 kcal Atomic # 16 Polarization: 118.14 SS G_CDS: -0.31 Total: 117.82 kcal Total: -80.54 -1.90 -82.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363969824.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.603 kcal (2) G-P(sol) polarization free energy of solvation -80.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds