Wall clock time and date at job start Tue Mar 31 2020 14:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 120.00546 * 2 1 4 4 H 1.48500 * 109.47049 * 84.66502 * 3 2 1 5 5 H 1.48494 * 109.47569 * 204.66742 * 3 2 1 6 6 H 1.48506 * 109.47164 * 324.66755 * 3 2 1 7 7 C 1.39956 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99900 * 330.09415 * 7 2 1 9 9 C 1.41385 * 119.99841 * 150.09096 * 7 2 1 10 10 C 1.40735 * 120.24728 * 329.45579 * 9 7 2 11 11 C 1.37597 * 119.74858 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24433 * 0.03193 * 11 10 9 13 13 C 1.38604 * 120.50331 * 359.97438 * 12 11 10 14 14 C 1.37643 * 120.24873 * 359.67487 * 13 12 11 15 15 S 1.76200 * 120.12765 * 180.32092 * 14 13 12 16 16 O 1.42107 * 106.39772 * 228.46514 * 15 14 13 17 17 O 1.42104 * 106.40286 * 1.38219 * 15 14 13 18 18 N 1.65589 * 107.21731 * 114.92657 * 15 14 13 19 19 C 1.47430 * 125.64890 * 276.72518 * 18 15 14 20 20 C 1.55132 * 104.72401 * 155.81964 * 19 18 15 21 21 C 1.55167 * 101.48431 * 37.29670 * 20 19 18 22 22 C 1.47029 * 125.64827 * 97.03638 * 18 15 14 23 23 H 1.08991 * 109.88263 * 300.43468 * 22 18 15 24 24 C 1.50696 * 109.88430 * 61.60619 * 22 18 15 25 25 N 1.34772 * 120.00056 * 180.02562 * 24 22 18 26 26 O 1.21284 * 119.99839 * 359.97438 * 24 22 18 27 27 H 0.97003 * 119.99041 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.12823 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87660 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.74569 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.87369 * 179.97438 * 13 12 11 32 32 H 1.08999 * 110.36635 * 274.74473 * 19 18 15 33 33 H 1.08998 * 110.36721 * 37.07171 * 19 18 15 34 34 H 1.09000 * 111.19396 * 279.19667 * 20 19 18 35 35 H 1.08997 * 110.93799 * 155.28836 * 20 19 18 36 36 H 1.09000 * 110.71830 * 205.96937 * 21 20 19 37 37 H 1.08995 * 110.87311 * 82.76952 * 21 20 19 38 38 H 0.96994 * 120.00184 * 359.97438 * 25 24 22 39 39 H 0.97005 * 119.99792 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3772 2.1114 1.3940 5 1 3.5917 1.4101 -0.5843 6 1 1.5008 2.6175 -0.8097 7 6 2.0080 -1.2121 0.0005 8 1 1.5758 -2.0849 0.4672 9 6 3.2806 -1.2939 -0.6100 10 6 3.5915 -0.4771 -1.7131 11 6 4.8331 -0.5655 -2.2997 12 6 5.7759 -1.4556 -1.8083 13 6 5.4806 -2.2650 -0.7225 14 6 4.2476 -2.1883 -0.1155 15 16 3.8786 -3.2127 1.2698 16 8 2.6140 -3.8047 1.0054 17 8 5.0518 -3.9703 1.5325 18 7 3.6644 -2.2150 2.5739 19 6 4.7387 -1.6644 3.4202 20 6 4.1320 -0.3787 4.0410 21 6 2.6645 -0.8179 4.2883 22 6 2.3709 -1.7366 3.0835 23 1 1.8514 -1.1750 2.3072 24 6 1.5292 -2.9064 3.5242 25 7 0.2965 -2.6980 4.0275 26 8 1.9609 -4.0355 3.4251 27 1 -0.4849 0.8402 -0.0004 28 1 2.8582 0.2159 -2.0982 29 1 5.0740 0.0606 -3.1460 30 1 6.7477 -1.5187 -2.2751 31 1 6.2225 -2.9550 -0.3484 32 1 5.0079 -2.3751 4.2016 33 1 5.6103 -1.4176 2.8141 34 1 4.1773 0.4559 3.3414 35 1 4.6278 -0.1274 4.9785 36 1 1.9983 0.0448 4.2869 37 1 2.5767 -1.3695 5.2243 38 1 -0.0489 -1.7951 4.1064 39 1 -0.2453 -3.4510 4.3108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364841434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:18 Heat of formation + Delta-G solvation = -86.484354 kcal Electronic energy + Delta-G solvation = -27431.158617 eV Core-core repulsion = 23658.381895 eV Total energy + Delta-G solvation = -3772.776722 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.57195 -37.82843 -37.04107 -36.13513 -34.68759 -33.96605 -33.30009 -30.79780 -30.39066 -30.02959 -29.05006 -25.45672 -23.16315 -21.97762 -21.24800 -21.18774 -20.24692 -18.31721 -17.81885 -17.30563 -16.81218 -16.49684 -16.08988 -15.37626 -15.16129 -14.52973 -14.27316 -14.20999 -13.77216 -13.43959 -13.40233 -13.12879 -12.94953 -12.87716 -12.29546 -12.22730 -11.98678 -11.54641 -11.32243 -11.22920 -11.09147 -11.00304 -10.99479 -10.87461 -10.64634 -10.61056 -10.37032 -10.03022 -9.62077 -9.42294 -9.27250 -9.22740 -8.38897 -8.16867 -7.74956 -7.34399 -4.88758 1.47861 2.13691 2.50771 2.88291 2.95279 3.05424 3.14055 3.72843 3.75201 4.04089 4.14025 4.65832 4.77940 4.87932 5.08055 5.15699 5.39394 5.49906 5.62127 5.78673 5.82319 5.87097 5.93039 5.96766 5.98859 6.20487 6.24360 6.36709 6.45900 6.55176 6.60644 6.89779 6.98316 7.13579 7.17565 7.32900 7.47069 7.59778 7.71026 7.83637 8.08596 8.33729 8.49643 8.71378 9.62180 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.008571 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.687874 B = 3266.066504 C = 4234.832963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.098 3.902 3 Si 0.864 3.136 4 H -0.263 1.263 5 H -0.217 1.217 6 H -0.272 1.272 7 C -0.474 4.474 8 H 0.129 0.871 9 C 0.165 3.835 10 C -0.207 4.207 11 C -0.055 4.055 12 C -0.256 4.256 13 C 0.011 3.989 14 C -0.777 4.777 15 S 2.725 3.275 16 O -0.948 6.948 17 O -0.991 6.991 18 N -0.985 5.985 19 C 0.123 3.877 20 C -0.128 4.128 21 C -0.120 4.120 22 C 0.127 3.873 23 H 0.130 0.870 24 C 0.510 3.490 25 N -0.855 5.855 26 O -0.527 6.527 27 H 0.291 0.709 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.399 0.601 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 6.297 8.312 10.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.128 4.128 3 Si 0.685 3.315 4 H -0.189 1.189 5 H -0.139 1.139 6 H -0.197 1.197 7 C -0.500 4.500 8 H 0.146 0.854 9 C 0.160 3.840 10 C -0.227 4.227 11 C -0.073 4.073 12 C -0.276 4.276 13 C -0.009 4.009 14 C -0.870 4.870 15 S 2.823 3.177 16 O -0.938 6.938 17 O -0.982 6.982 18 N -0.819 5.819 19 C -0.003 4.003 20 C -0.167 4.167 21 C -0.159 4.159 22 C 0.016 3.984 23 H 0.147 0.853 24 C 0.294 3.706 25 N -0.420 5.420 26 O -0.401 6.401 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.227 0.773 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.853 4.719 8.145 9.594 hybrid contribution -0.256 1.635 -0.483 1.724 sum 1.597 6.355 7.662 10.082 Atomic orbital electron populations 1.69844 1.08388 1.31005 1.29024 1.26226 0.94406 1.01791 0.90338 0.86896 0.84573 0.79816 0.80189 1.18871 1.13935 1.19736 1.20291 0.98614 0.99115 1.31971 0.85373 1.16987 0.90159 0.87746 0.89091 1.21136 0.97190 1.04799 0.99580 1.20819 0.93559 0.95922 0.97027 1.20488 0.99659 1.04389 1.03113 1.20376 0.93423 0.93990 0.93099 1.30160 1.03204 1.28472 1.25153 1.00614 0.72821 0.72313 0.71960 1.93513 1.41937 1.74170 1.84190 1.93428 1.51098 1.68177 1.85501 1.58467 1.10554 1.68213 1.44679 1.21943 0.90087 0.94165 0.94073 1.22820 0.94802 0.97902 1.01197 1.22616 0.98014 0.98680 0.96638 1.21520 0.85598 0.92711 0.98530 0.85267 1.21073 0.82234 0.91253 0.76082 1.43694 1.17849 1.12267 1.68167 1.90713 1.72037 1.24428 1.52971 0.89820 0.88230 0.88448 0.88257 0.87050 0.91644 0.90550 0.90122 0.90140 0.89667 0.90636 0.77314 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.28 13.93 55.55 0.77 -16.50 16 2 C 0.10 2.20 4.78 -17.34 -0.08 2.12 16 3 Si 0.86 16.69 26.25 -169.99 -4.46 12.23 16 4 H -0.26 -4.74 7.11 56.52 0.40 -4.33 16 5 H -0.22 -4.35 5.30 56.52 0.30 -4.05 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.47 -11.61 6.47 -37.74 -0.24 -11.85 16 8 H 0.13 3.44 5.07 -52.49 -0.27 3.18 16 9 C 0.16 4.01 4.99 -106.83 -0.53 3.48 16 10 C -0.21 -4.73 6.71 -38.87 -0.26 -4.99 16 11 C -0.05 -1.14 10.02 -39.66 -0.40 -1.54 16 12 C -0.26 -5.31 10.05 -39.29 -0.39 -5.71 16 13 C 0.01 0.24 9.53 -39.66 -0.38 -0.13 16 14 C -0.78 -18.51 5.96 -38.87 -0.23 -18.74 16 15 S 2.73 64.89 4.77 -107.50 -0.51 64.37 16 16 O -0.95 -25.47 12.87 -66.12 -0.85 -26.32 16 17 O -0.99 -24.59 16.65 -57.17 -0.95 -25.54 16 18 N -0.98 -19.40 3.07 -105.50 -0.32 -19.72 16 19 C 0.12 1.91 7.06 -2.41 -0.02 1.89 16 20 C -0.13 -1.56 7.10 -24.46 -0.17 -1.73 16 21 C -0.12 -1.50 6.40 -24.89 -0.16 -1.66 16 22 C 0.13 2.24 2.94 -68.10 -0.20 2.04 16 23 H 0.13 2.48 5.13 -51.93 -0.27 2.21 16 24 C 0.51 9.56 6.73 -10.99 -0.07 9.48 16 25 N -0.86 -11.65 8.81 31.22 0.28 -11.38 16 26 O -0.53 -12.21 15.03 -16.12 -0.24 -12.45 16 27 H 0.29 5.84 8.30 -40.82 -0.34 5.50 16 28 H 0.10 2.17 5.92 -52.49 -0.31 1.85 16 29 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.11 2.31 7.33 -52.48 -0.38 1.92 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 38 H 0.40 4.19 8.81 -40.82 -0.36 3.83 16 39 H 0.40 4.83 8.93 -40.82 -0.36 4.46 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -33.20 323.78 -9.12 -42.32 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -4.55 Total: 15.45 kcal Atomic # 6 Polarization: -24.20 SS G_CDS: -3.15 Total: -27.34 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.72 Total: -47.60 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -2.04 Total: -64.31 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -4.46 Total: 12.23 kcal Atomic # 16 Polarization: 64.89 SS G_CDS: -0.51 Total: 64.37 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.20 -9.12 -42.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364841434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.166 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds