Wall clock time and date at job start Tue Mar 31 2020 14:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86797 * 120.00546 * 2 1 4 4 H 1.48500 * 109.47049 * 84.66502 * 3 2 1 5 5 H 1.48494 * 109.47569 * 204.66742 * 3 2 1 6 6 H 1.48506 * 109.47164 * 324.66755 * 3 2 1 7 7 C 1.39956 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99900 * 330.09415 * 7 2 1 9 9 C 1.41385 * 119.99841 * 150.09096 * 7 2 1 10 10 C 1.40735 * 120.24728 * 329.45579 * 9 7 2 11 11 C 1.37597 * 119.74858 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24433 * 0.03193 * 11 10 9 13 13 C 1.38604 * 120.50331 * 359.97438 * 12 11 10 14 14 C 1.37643 * 120.24873 * 359.67487 * 13 12 11 15 15 S 1.76200 * 120.12765 * 180.32092 * 14 13 12 16 16 O 1.42107 * 106.39772 * 228.46514 * 15 14 13 17 17 O 1.42104 * 106.40286 * 1.38219 * 15 14 13 18 18 N 1.65589 * 107.21731 * 114.92657 * 15 14 13 19 19 C 1.47430 * 125.64890 * 276.72518 * 18 15 14 20 20 C 1.55132 * 104.72401 * 155.81964 * 19 18 15 21 21 C 1.55167 * 101.48431 * 37.29670 * 20 19 18 22 22 C 1.47029 * 125.64827 * 97.03638 * 18 15 14 23 23 H 1.08991 * 109.88263 * 300.43468 * 22 18 15 24 24 C 1.50696 * 109.88430 * 61.60619 * 22 18 15 25 25 N 1.34772 * 120.00056 * 180.02562 * 24 22 18 26 26 O 1.21284 * 119.99839 * 359.97438 * 24 22 18 27 27 H 0.97003 * 119.99041 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.12823 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87660 * 180.02562 * 11 10 9 30 30 H 1.08001 * 119.74569 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.87369 * 179.97438 * 13 12 11 32 32 H 1.08999 * 110.36635 * 274.74473 * 19 18 15 33 33 H 1.08998 * 110.36721 * 37.07171 * 19 18 15 34 34 H 1.09000 * 111.19396 * 279.19667 * 20 19 18 35 35 H 1.08997 * 110.93799 * 155.28836 * 20 19 18 36 36 H 1.09000 * 110.71830 * 205.96937 * 21 20 19 37 37 H 1.08995 * 110.87311 * 82.76952 * 21 20 19 38 38 H 0.96994 * 120.00184 * 359.97438 * 25 24 22 39 39 H 0.97005 * 119.99792 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3772 2.1114 1.3940 5 1 3.5917 1.4101 -0.5843 6 1 1.5008 2.6175 -0.8097 7 6 2.0080 -1.2121 0.0005 8 1 1.5758 -2.0849 0.4672 9 6 3.2806 -1.2939 -0.6100 10 6 3.5915 -0.4771 -1.7131 11 6 4.8331 -0.5655 -2.2997 12 6 5.7759 -1.4556 -1.8083 13 6 5.4806 -2.2650 -0.7225 14 6 4.2476 -2.1883 -0.1155 15 16 3.8786 -3.2127 1.2698 16 8 2.6140 -3.8047 1.0054 17 8 5.0518 -3.9703 1.5325 18 7 3.6644 -2.2150 2.5739 19 6 4.7387 -1.6644 3.4202 20 6 4.1320 -0.3787 4.0410 21 6 2.6645 -0.8179 4.2883 22 6 2.3709 -1.7366 3.0835 23 1 1.8514 -1.1750 2.3072 24 6 1.5292 -2.9064 3.5242 25 7 0.2965 -2.6980 4.0275 26 8 1.9609 -4.0355 3.4251 27 1 -0.4849 0.8402 -0.0004 28 1 2.8582 0.2159 -2.0982 29 1 5.0740 0.0606 -3.1460 30 1 6.7477 -1.5187 -2.2751 31 1 6.2225 -2.9550 -0.3484 32 1 5.0079 -2.3751 4.2016 33 1 5.6103 -1.4176 2.8141 34 1 4.1773 0.4559 3.3414 35 1 4.6278 -0.1274 4.9785 36 1 1.9983 0.0448 4.2869 37 1 2.5767 -1.3695 5.2243 38 1 -0.0489 -1.7951 4.1064 39 1 -0.2453 -3.4510 4.3108 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364841434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:17 Heat of formation + Delta-G solvation = -112.618874 kcal Electronic energy + Delta-G solvation = -27432.291895 eV Core-core repulsion = 23658.381895 eV Total energy + Delta-G solvation = -3773.910000 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.95683 -39.53540 -38.39579 -38.00834 -36.60504 -35.67777 -34.66903 -32.48103 -31.73518 -31.66945 -30.28506 -27.19171 -24.48127 -23.64897 -22.91050 -22.36944 -21.64472 -19.85496 -19.54616 -18.96830 -18.24789 -17.90608 -17.66084 -17.05029 -16.69614 -16.04300 -15.89353 -15.65165 -15.42228 -15.10676 -14.82930 -14.61089 -14.49738 -14.12910 -13.93396 -13.64205 -13.49730 -13.11579 -12.92557 -12.89905 -12.73560 -12.67758 -12.55209 -12.31438 -12.08877 -12.04732 -11.66775 -11.61898 -11.11053 -11.08076 -10.94887 -10.58222 -9.93625 -9.78580 -9.47865 -9.02718 -6.66748 -0.25177 0.40738 0.81996 1.35378 1.42858 1.52930 1.70997 2.19154 2.24254 2.45316 2.67481 3.13140 3.35611 3.43107 3.61595 3.95664 4.06545 4.23103 4.26633 4.36012 4.45083 4.63265 4.65405 4.76440 4.79062 4.90935 4.94000 5.02792 5.07786 5.17448 5.24314 5.37834 5.43922 5.54041 5.66519 5.76700 5.88451 5.97572 6.11239 6.29550 6.49930 6.58792 6.72028 7.41289 7.99689 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.011893 B = 0.008571 C = 0.006610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.687874 B = 3266.066504 C = 4234.832963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.237 1.237 5 H -0.228 1.228 6 H -0.264 1.264 7 C -0.492 4.492 8 H 0.093 0.907 9 C 0.148 3.852 10 C -0.226 4.226 11 C -0.052 4.052 12 C -0.250 4.250 13 C -0.008 4.008 14 C -0.794 4.794 15 S 2.729 3.271 16 O -0.992 6.992 17 O -1.015 7.015 18 N -0.989 5.989 19 C 0.106 3.894 20 C -0.116 4.116 21 C -0.112 4.112 22 C 0.118 3.882 23 H 0.113 0.887 24 C 0.501 3.499 25 N -0.832 5.832 26 O -0.582 6.582 27 H 0.304 0.696 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.093 0.907 38 H 0.417 0.583 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 9.564 9.024 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.148 4.148 3 Si 0.733 3.267 4 H -0.160 1.160 5 H -0.151 1.151 6 H -0.188 1.188 7 C -0.518 4.518 8 H 0.111 0.889 9 C 0.144 3.856 10 C -0.246 4.246 11 C -0.070 4.070 12 C -0.270 4.270 13 C -0.027 4.027 14 C -0.888 4.888 15 S 2.828 3.172 16 O -0.982 6.982 17 O -1.006 7.006 18 N -0.826 5.826 19 C -0.019 4.019 20 C -0.155 4.155 21 C -0.151 4.151 22 C 0.008 3.992 23 H 0.130 0.870 24 C 0.284 3.716 25 N -0.397 5.397 26 O -0.462 6.462 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.137 0.863 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.111 0.889 38 H 0.248 0.752 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.725 8.004 8.885 12.265 hybrid contribution -0.570 0.575 -0.734 1.093 sum 2.155 8.579 8.152 12.029 Atomic orbital electron populations 1.69825 1.09460 1.32632 1.29199 1.26803 0.94863 1.03737 0.89408 0.86137 0.82626 0.76224 0.81728 1.16044 1.15068 1.18843 1.20111 0.99319 0.99098 1.33301 0.88916 1.17164 0.90177 0.88501 0.89781 1.21302 0.98514 1.05231 0.99562 1.21253 0.92502 0.95731 0.97494 1.20921 1.01090 1.03005 1.01936 1.20646 0.93176 0.94907 0.94007 1.30192 1.04054 1.28732 1.25791 1.00053 0.71587 0.72759 0.72751 1.93451 1.43612 1.75932 1.85212 1.93374 1.51573 1.69594 1.86073 1.58131 1.12684 1.67831 1.43948 1.22349 0.89495 0.96146 0.93882 1.22852 0.94219 0.95681 1.02721 1.22738 0.98978 0.98614 0.94728 1.21742 0.84511 0.92830 1.00098 0.87000 1.21460 0.83455 0.90866 0.75774 1.43485 1.16295 1.13744 1.66168 1.90684 1.73505 1.26364 1.55599 0.88463 0.87611 0.84585 0.84791 0.86344 0.91076 0.90410 0.90034 0.86100 0.86656 0.88891 0.75235 0.76244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.76 13.93 21.83 0.30 -35.46 16 2 C 0.08 3.37 4.78 85.26 0.41 3.78 16 3 Si 0.91 32.74 26.25 68.60 1.80 34.54 16 4 H -0.24 -7.40 7.11 99.48 0.71 -6.69 16 5 H -0.23 -8.53 5.30 99.48 0.53 -8.00 16 6 H -0.26 -9.01 7.11 99.48 0.71 -8.31 16 7 C -0.49 -24.76 6.47 23.46 0.15 -24.61 16 8 H 0.09 5.30 5.07 -2.91 -0.01 5.28 16 9 C 0.15 7.30 4.99 -21.29 -0.11 7.19 16 10 C -0.23 -10.07 6.71 22.73 0.15 -9.92 16 11 C -0.05 -2.01 10.02 22.22 0.22 -1.78 16 12 C -0.25 -9.75 10.05 22.46 0.23 -9.52 16 13 C -0.01 -0.33 9.53 22.22 0.21 -0.12 16 14 C -0.79 -38.63 5.96 22.73 0.14 -38.50 16 15 S 2.73 135.99 4.77 -56.49 -0.27 135.72 16 16 O -0.99 -56.95 12.87 -119.45 -1.54 -58.49 16 17 O -1.02 -52.62 16.65 -128.00 -2.13 -54.76 16 18 N -0.99 -39.61 3.07 -487.69 -1.50 -41.10 16 19 C 0.11 3.18 7.06 86.93 0.61 3.79 16 20 C -0.12 -2.42 7.10 32.07 0.23 -2.20 16 21 C -0.11 -2.46 6.40 31.79 0.20 -2.25 16 22 C 0.12 4.16 2.94 44.59 0.13 4.29 16 23 H 0.11 4.36 5.13 -2.39 -0.01 4.35 16 24 C 0.50 19.13 6.73 87.66 0.59 19.72 16 25 N -0.83 -22.39 8.81 -173.54 -1.53 -23.92 16 26 O -0.58 -28.29 15.03 17.68 0.27 -28.02 16 27 H 0.30 11.93 8.30 -92.71 -0.77 11.16 16 28 H 0.11 4.46 5.92 -2.91 -0.02 4.45 16 29 H 0.14 4.20 8.06 -2.91 -0.02 4.17 16 30 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.12 4.94 7.33 -2.91 -0.02 4.92 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.12 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.09 1.74 7.84 -2.39 -0.02 1.73 16 38 H 0.42 8.17 8.81 -92.71 -0.82 7.36 16 39 H 0.41 9.79 8.93 -92.70 -0.83 8.96 16 Total: -1.00 -76.51 323.78 -2.13 -78.64 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -0.70 Total: 42.99 kcal Atomic # 6 Polarization: -53.30 SS G_CDS: 3.17 Total: -50.13 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -2.72 Total: -100.48 kcal Atomic # 8 Polarization: -137.86 SS G_CDS: -3.40 Total: -141.27 kcal Atomic # 14 Polarization: 32.74 SS G_CDS: 1.80 Total: 34.54 kcal Atomic # 16 Polarization: 135.99 SS G_CDS: -0.27 Total: 135.72 kcal Total: -76.51 -2.13 -78.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364841434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.981 kcal (2) G-P(sol) polarization free energy of solvation -76.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds