Wall clock time and date at job start Tue Mar 31 2020 14:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86806 * 119.99797 * 2 1 4 4 H 1.48498 * 109.46952 * 270.00088 * 3 2 1 5 5 H 1.48504 * 109.46816 * 29.99698 * 3 2 1 6 6 H 1.48492 * 109.46894 * 150.00085 * 3 2 1 7 7 C 1.39921 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00170 * 189.88042 * 7 2 1 9 9 C 1.41411 * 119.99959 * 9.87488 * 7 2 1 10 10 C 1.40781 * 120.20812 * 209.12946 * 9 7 2 11 11 C 1.37642 * 119.88304 * 180.02562 * 10 9 7 12 12 C 1.38535 * 120.32163 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42845 * 359.97207 * 12 11 10 14 14 N 1.39952 * 119.94989 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00351 * 143.84197 * 14 13 12 16 16 O 1.21585 * 119.99838 * 4.61183 * 15 14 13 17 17 N 1.34780 * 120.00005 * 184.61964 * 15 14 13 18 18 C 1.46389 * 119.69631 * 174.71058 * 17 15 14 19 19 C 1.53181 * 109.50324 * 244.31413 * 18 17 15 20 20 S 1.81662 * 108.95069 * 301.74136 * 19 18 17 21 21 O 1.42103 * 108.65496 * 169.91825 * 20 19 18 22 22 O 1.42101 * 108.65241 * 301.13353 * 20 19 18 23 23 C 1.81664 * 101.47922 * 55.52529 * 20 19 18 24 24 C 1.46381 * 119.69930 * 354.72355 * 17 15 14 25 25 C 1.38272 * 120.10677 * 0.28251 * 13 12 11 26 26 H 0.97000 * 120.00041 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.06263 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.84312 * 179.97438 * 11 10 9 29 29 H 1.08000 * 119.78491 * 180.02562 * 12 11 10 30 30 H 0.97004 * 119.99665 * 323.84549 * 14 13 12 31 31 H 1.08993 * 109.46778 * 124.30306 * 18 17 15 32 32 H 1.08997 * 109.45956 * 4.31851 * 18 17 15 33 33 H 1.09006 * 109.55338 * 181.90252 * 19 18 17 34 34 H 1.08999 * 109.56116 * 61.58582 * 19 18 17 35 35 H 1.09002 * 109.55386 * 64.31706 * 23 20 19 36 36 H 1.08997 * 109.56364 * 184.63929 * 23 20 19 37 37 H 1.09001 * 109.46539 * 235.69486 * 24 17 15 38 38 H 1.08994 * 109.46789 * 355.67592 * 24 17 15 39 39 H 1.07997 * 120.16302 * 179.72355 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2117 0.0005 8 1 3.0760 -1.2186 0.1610 9 6 1.3167 -2.4274 -0.2089 10 6 1.7960 -3.6221 0.3610 11 6 1.1181 -4.8017 0.1523 12 6 -0.0341 -4.8197 -0.6167 13 6 -0.5199 -3.6457 -1.1866 14 7 -1.6851 -3.6753 -1.9612 15 6 -2.5514 -2.6438 -1.9152 16 8 -2.2812 -1.6516 -1.2664 17 7 -3.7172 -2.7123 -2.5881 18 6 -4.7034 -1.6404 -2.4411 19 6 -5.9706 -2.1978 -1.7854 20 16 -6.6199 -3.5494 -2.8109 21 8 -7.6486 -4.2134 -2.0896 22 8 -6.8973 -3.0420 -4.1090 23 6 -5.1784 -4.6502 -2.9132 24 6 -3.9857 -3.8578 -3.4589 25 6 0.1500 -2.4517 -0.9928 26 1 -0.4850 0.8400 -0.0004 27 1 2.6941 -3.6132 0.9609 28 1 1.4866 -5.7179 0.5895 29 1 -0.5593 -5.7500 -0.7744 30 1 -1.8693 -4.4382 -2.5313 31 1 -4.9500 -1.2366 -3.4230 32 1 -4.2892 -0.8490 -1.8165 33 1 -6.7179 -1.4082 -1.7063 34 1 -5.7310 -2.5764 -0.7917 35 1 -4.9384 -5.0302 -1.9202 36 1 -5.4017 -5.4829 -3.5801 37 1 -4.2162 -3.5040 -4.4638 38 1 -3.1071 -4.5018 -3.4933 39 1 -0.2236 -1.5415 -1.4381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365199117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:04 Heat of formation + Delta-G solvation = -49.760247 kcal Electronic energy + Delta-G solvation = -25577.351714 eV Core-core repulsion = 21806.167469 eV Total energy + Delta-G solvation = -3771.184245 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38942 -37.83480 -37.24196 -36.31704 -36.16121 -34.49765 -33.28589 -32.17877 -30.57832 -29.51021 -28.00895 -25.25470 -24.52909 -23.76474 -21.40293 -20.83795 -19.61591 -18.94901 -18.52409 -17.35068 -16.72343 -16.48636 -16.14109 -16.01283 -15.61527 -15.30518 -14.66515 -14.62797 -14.24889 -13.96063 -13.53633 -13.30568 -13.05665 -12.78111 -12.64957 -12.49212 -12.40290 -12.28627 -12.23357 -12.07650 -11.59554 -11.19109 -11.08685 -11.04049 -10.77361 -10.53408 -10.53110 -10.11331 -9.74715 -9.34439 -9.08745 -9.03708 -8.86676 -7.32126 -6.97439 -6.50247 -4.29890 -0.28814 2.35023 2.54569 2.76403 2.98549 3.13307 3.16115 3.22399 3.33825 3.51911 3.78324 3.98022 4.01990 4.05003 4.42989 4.48506 4.68112 4.73283 4.77447 4.99877 5.19516 5.32601 5.53677 5.66333 5.72362 6.17077 6.26614 6.40337 6.62304 6.70775 6.96356 7.15398 7.18808 7.37539 7.68246 7.82698 7.87991 8.11325 8.28664 8.45695 8.64902 8.97184 9.01191 9.03655 10.34918 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.003650 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.155861 B = 7670.077949 C = 8823.853892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.466 4.466 8 H 0.076 0.924 9 C 0.118 3.882 10 C -0.234 4.234 11 C -0.083 4.083 12 C -0.264 4.264 13 C 0.149 3.851 14 N -0.681 5.681 15 C 0.689 3.311 16 O -0.517 6.517 17 N -0.648 5.648 18 C 0.139 3.861 19 C -0.619 4.619 20 S 2.421 3.579 21 O -0.944 6.944 22 O -0.936 6.936 23 C -0.627 4.627 24 C 0.122 3.878 25 C -0.150 4.150 26 H 0.279 0.721 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.390 0.610 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.918 -5.563 -7.164 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.150 4.150 3 Si 0.730 3.270 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.496 4.496 8 H 0.094 0.906 9 C 0.115 3.885 10 C -0.254 4.254 11 C -0.101 4.101 12 C -0.285 4.285 13 C 0.057 3.943 14 N -0.330 5.330 15 C 0.391 3.609 16 O -0.388 6.388 17 N -0.389 5.389 18 C 0.014 3.986 19 C -0.750 4.750 20 S 2.602 3.398 21 O -0.941 6.941 22 O -0.933 6.933 23 C -0.757 4.757 24 C -0.004 4.004 25 C -0.171 4.171 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.227 0.773 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.792 -4.725 -7.022 14.515 hybrid contribution 0.834 0.156 0.259 0.887 sum -10.958 -4.570 -6.763 13.664 Atomic orbital electron populations 1.69889 1.06647 1.28877 1.33487 1.25941 0.94940 1.00926 0.93176 0.86369 0.80362 0.81189 0.79067 1.19548 1.20415 1.18826 1.19514 0.95593 0.90384 1.44073 0.90610 1.17527 0.91012 0.92104 0.87847 1.21042 1.03325 0.93616 1.07465 1.20276 0.95217 0.96510 0.98142 1.19996 1.02503 0.95395 1.10655 1.17433 0.85659 0.95515 0.95692 1.42742 1.22052 1.20849 1.47349 1.16056 0.79828 0.84503 0.80541 1.91186 1.74514 1.29633 1.43448 1.47420 1.18436 1.23391 1.49623 1.21000 0.84678 0.90780 1.02136 1.30589 1.09463 1.19263 1.15646 1.07932 0.77072 0.78301 0.76446 1.93599 1.52452 1.73790 1.74221 1.93592 1.83142 1.79286 1.37312 1.30642 1.17888 1.15225 1.11947 1.21189 0.97208 0.87672 0.94288 1.21595 0.97033 0.96450 1.02049 0.90946 0.89003 0.89172 0.89541 0.77338 0.89211 0.85882 0.83681 0.84368 0.84330 0.83690 0.88644 0.88110 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.51 10.84 55.55 0.60 -19.91 16 2 C 0.07 1.79 5.26 -17.34 -0.09 1.70 16 3 Si 0.91 19.15 29.57 -169.99 -5.03 14.13 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.47 -12.50 9.06 -37.74 -0.34 -12.84 16 8 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 9 C 0.12 3.17 5.55 -106.85 -0.59 2.58 16 10 C -0.23 -5.72 9.79 -38.84 -0.38 -6.10 16 11 C -0.08 -1.81 10.02 -39.69 -0.40 -2.20 16 12 C -0.26 -5.59 9.97 -39.10 -0.39 -5.98 16 13 C 0.15 3.34 6.27 -83.76 -0.53 2.81 16 14 N -0.68 -11.93 5.23 -14.27 -0.07 -12.01 16 15 C 0.69 12.29 8.09 -86.91 -0.70 11.58 16 16 O -0.52 -11.76 13.16 5.29 0.07 -11.69 16 17 N -0.65 -8.00 2.80 -179.35 -0.50 -8.50 16 18 C 0.14 1.50 6.20 -4.01 -0.02 1.48 16 19 C -0.62 -5.22 6.55 37.25 0.24 -4.98 16 20 S 2.42 21.35 5.28 -107.50 -0.57 20.78 16 21 O -0.94 -11.61 18.10 -57.82 -1.05 -12.66 16 22 O -0.94 -10.66 18.02 -57.82 -1.04 -11.70 16 23 C -0.63 -4.32 6.56 37.28 0.24 -4.07 16 24 C 0.12 1.03 6.16 -3.98 -0.02 1.01 16 25 C -0.15 -3.90 7.28 -38.69 -0.28 -4.18 16 26 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 27 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.39 5.16 6.20 -40.82 -0.25 4.91 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.12 1.60 6.88 -51.93 -0.36 1.25 16 33 H 0.15 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.14 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.15 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.75 5.47 -51.93 -0.28 0.47 16 39 H 0.14 4.00 4.49 -52.49 -0.24 3.76 16 LS Contribution 333.34 15.07 5.02 5.02 Total: -1.00 -35.95 333.34 -10.31 -46.26 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -4.48 Total: 9.49 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -3.26 Total: -19.21 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.02 Total: -40.42 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -2.02 Total: -36.05 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal Atomic # 16 Polarization: 21.35 SS G_CDS: -0.57 Total: 20.78 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.95 -10.31 -46.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365199117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.499 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds