Wall clock time and date at job start Tue Mar 31 2020 14:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86806 * 119.99797 * 2 1 4 4 H 1.48498 * 109.46952 * 270.00088 * 3 2 1 5 5 H 1.48504 * 109.46816 * 29.99698 * 3 2 1 6 6 H 1.48492 * 109.46894 * 150.00085 * 3 2 1 7 7 C 1.39921 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00170 * 189.88042 * 7 2 1 9 9 C 1.41411 * 119.99959 * 9.87488 * 7 2 1 10 10 C 1.40781 * 120.20812 * 209.12946 * 9 7 2 11 11 C 1.37642 * 119.88304 * 180.02562 * 10 9 7 12 12 C 1.38535 * 120.32163 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42845 * 359.97207 * 12 11 10 14 14 N 1.39952 * 119.94989 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00351 * 143.84197 * 14 13 12 16 16 O 1.21585 * 119.99838 * 4.61183 * 15 14 13 17 17 N 1.34780 * 120.00005 * 184.61964 * 15 14 13 18 18 C 1.46389 * 119.69631 * 174.71058 * 17 15 14 19 19 C 1.53181 * 109.50324 * 244.31413 * 18 17 15 20 20 S 1.81662 * 108.95069 * 301.74136 * 19 18 17 21 21 O 1.42103 * 108.65496 * 169.91825 * 20 19 18 22 22 O 1.42101 * 108.65241 * 301.13353 * 20 19 18 23 23 C 1.81664 * 101.47922 * 55.52529 * 20 19 18 24 24 C 1.46381 * 119.69930 * 354.72355 * 17 15 14 25 25 C 1.38272 * 120.10677 * 0.28251 * 13 12 11 26 26 H 0.97000 * 120.00041 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.06263 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.84312 * 179.97438 * 11 10 9 29 29 H 1.08000 * 119.78491 * 180.02562 * 12 11 10 30 30 H 0.97004 * 119.99665 * 323.84549 * 14 13 12 31 31 H 1.08993 * 109.46778 * 124.30306 * 18 17 15 32 32 H 1.08997 * 109.45956 * 4.31851 * 18 17 15 33 33 H 1.09006 * 109.55338 * 181.90252 * 19 18 17 34 34 H 1.08999 * 109.56116 * 61.58582 * 19 18 17 35 35 H 1.09002 * 109.55386 * 64.31706 * 23 20 19 36 36 H 1.08997 * 109.56364 * 184.63929 * 23 20 19 37 37 H 1.09001 * 109.46539 * 235.69486 * 24 17 15 38 38 H 1.08994 * 109.46789 * 355.67592 * 24 17 15 39 39 H 1.07997 * 120.16302 * 179.72355 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4898 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2117 0.0005 8 1 3.0760 -1.2186 0.1610 9 6 1.3167 -2.4274 -0.2089 10 6 1.7960 -3.6221 0.3610 11 6 1.1181 -4.8017 0.1523 12 6 -0.0341 -4.8197 -0.6167 13 6 -0.5199 -3.6457 -1.1866 14 7 -1.6851 -3.6753 -1.9612 15 6 -2.5514 -2.6438 -1.9152 16 8 -2.2812 -1.6516 -1.2664 17 7 -3.7172 -2.7123 -2.5881 18 6 -4.7034 -1.6404 -2.4411 19 6 -5.9706 -2.1978 -1.7854 20 16 -6.6199 -3.5494 -2.8109 21 8 -7.6486 -4.2134 -2.0896 22 8 -6.8973 -3.0420 -4.1090 23 6 -5.1784 -4.6502 -2.9132 24 6 -3.9857 -3.8578 -3.4589 25 6 0.1500 -2.4517 -0.9928 26 1 -0.4850 0.8400 -0.0004 27 1 2.6941 -3.6132 0.9609 28 1 1.4866 -5.7179 0.5895 29 1 -0.5593 -5.7500 -0.7744 30 1 -1.8693 -4.4382 -2.5313 31 1 -4.9500 -1.2366 -3.4230 32 1 -4.2892 -0.8490 -1.8165 33 1 -6.7179 -1.4082 -1.7063 34 1 -5.7310 -2.5764 -0.7917 35 1 -4.9384 -5.0302 -1.9202 36 1 -5.4017 -5.4829 -3.5801 37 1 -4.2162 -3.5040 -4.4638 38 1 -3.1071 -4.5018 -3.4933 39 1 -0.2236 -1.5415 -1.4381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365199117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:03 Heat of formation + Delta-G solvation = -76.483534 kcal Electronic energy + Delta-G solvation = -25578.510523 eV Core-core repulsion = 21806.167469 eV Total energy + Delta-G solvation = -3772.343054 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.69305 -39.34817 -38.19383 -37.39329 -37.12049 -36.11209 -35.00923 -33.04794 -31.62373 -31.32085 -29.58405 -27.14447 -25.31307 -24.83010 -23.04087 -22.42600 -20.86618 -20.15154 -19.58513 -18.93064 -17.75839 -17.41324 -17.27227 -16.91754 -16.87537 -16.56259 -16.33303 -16.06342 -15.44752 -15.28587 -14.66552 -14.57414 -14.22078 -14.07377 -14.05087 -13.52207 -13.40227 -13.28325 -13.21001 -13.06901 -12.91056 -12.85838 -12.80868 -12.60937 -12.20884 -11.91547 -11.80666 -11.51873 -11.23200 -11.09812 -10.83569 -10.64348 -9.98978 -9.19188 -8.71968 -8.35144 -6.28126 -0.99545 0.94839 1.17131 1.37747 1.49095 1.50483 1.53451 1.67308 2.17863 2.25049 2.66152 2.82336 2.86628 3.00321 3.32880 3.69649 3.80633 3.86383 4.05427 4.07078 4.25246 4.52417 4.58163 4.71139 4.74762 4.76844 4.85153 4.93348 5.15038 5.28235 5.29476 5.37347 5.49338 5.65538 5.92758 6.04341 6.10491 6.25618 6.50908 6.75806 6.97443 7.05826 7.12523 7.65817 8.46950 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018164 B = 0.003650 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.155861 B = 7670.077949 C = 8823.853892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.027 3.973 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.506 4.506 8 H 0.072 0.928 9 C 0.083 3.917 10 C -0.254 4.254 11 C -0.082 4.082 12 C -0.250 4.250 13 C 0.153 3.847 14 N -0.670 5.670 15 C 0.685 3.315 16 O -0.573 6.573 17 N -0.637 5.637 18 C 0.132 3.868 19 C -0.615 4.615 20 S 2.440 3.560 21 O -0.979 6.979 22 O -0.962 6.962 23 C -0.610 4.610 24 C 0.109 3.891 25 C -0.180 4.180 26 H 0.278 0.722 27 H 0.095 0.905 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.414 0.586 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.165 0.835 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.181 0.819 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 -7.749 -8.200 16.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.189 4.189 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.080 3.920 10 C -0.274 4.274 11 C -0.101 4.101 12 C -0.271 4.271 13 C 0.059 3.941 14 N -0.322 5.322 15 C 0.387 3.613 16 O -0.448 6.448 17 N -0.376 5.376 18 C 0.008 3.992 19 C -0.745 4.745 20 S 2.625 3.375 21 O -0.976 6.976 22 O -0.959 6.959 23 C -0.742 4.742 24 C -0.015 4.015 25 C -0.201 4.201 26 H 0.089 0.911 27 H 0.113 0.887 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.254 0.746 31 H 0.130 0.870 32 H 0.113 0.887 33 H 0.183 0.817 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.198 0.802 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.656 -6.957 -8.107 16.562 hybrid contribution 1.010 0.640 0.522 1.305 sum -11.646 -6.318 -7.585 15.267 Atomic orbital electron populations 1.70024 1.08045 1.29428 1.34960 1.26733 0.95674 1.04092 0.92355 0.85298 0.79030 0.76691 0.79194 1.19019 1.19768 1.18192 1.19749 0.95647 0.91724 1.46513 0.90998 1.17907 0.92036 0.93145 0.88877 1.21247 1.04037 0.94123 1.07973 1.20712 0.94925 0.96922 0.97530 1.20476 1.01864 0.96409 1.08400 1.17540 0.86412 0.94797 0.95340 1.42502 1.20641 1.21809 1.47207 1.16286 0.80990 0.83637 0.80433 1.91173 1.76004 1.31661 1.45918 1.47353 1.16732 1.24753 1.48793 1.21129 0.84937 0.90077 1.03095 1.30561 1.08573 1.20052 1.15364 1.07240 0.77168 0.77921 0.75216 1.93558 1.54823 1.74410 1.74815 1.93557 1.84106 1.79893 1.38330 1.30528 1.15028 1.15122 1.13551 1.21601 0.98542 0.86753 0.94564 1.21486 0.97956 0.97193 1.03495 0.91119 0.88717 0.85379 0.85231 0.74584 0.86999 0.88712 0.81744 0.84408 0.83299 0.80160 0.86347 0.86540 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.26 10.84 21.82 0.24 -45.02 16 2 C 0.03 1.45 5.26 85.25 0.45 1.90 16 3 Si 0.98 40.87 29.57 68.60 2.03 42.90 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.51 -28.54 9.06 23.46 0.21 -28.33 16 8 H 0.07 3.90 7.86 -2.91 -0.02 3.88 16 9 C 0.08 4.62 5.55 -21.30 -0.12 4.51 16 10 C -0.25 -12.47 9.79 22.75 0.22 -12.25 16 11 C -0.08 -3.41 10.02 22.20 0.22 -3.19 16 12 C -0.25 -9.82 9.97 22.58 0.23 -9.60 16 13 C 0.15 6.70 6.27 38.10 0.24 6.94 16 14 N -0.67 -22.30 5.23 -317.33 -1.66 -23.97 16 15 C 0.69 24.15 8.09 179.05 1.45 25.60 16 16 O -0.57 -27.12 13.16 -3.99 -0.05 -27.17 16 17 N -0.64 -14.69 2.80 -839.61 -2.35 -17.04 16 18 C 0.13 2.76 6.20 86.46 0.54 3.29 16 19 C -0.61 -9.59 6.55 72.04 0.47 -9.11 16 20 S 2.44 37.45 5.28 -56.49 -0.30 37.15 16 21 O -0.98 -22.43 18.10 -127.38 -2.31 -24.73 16 22 O -0.96 -19.77 18.02 -127.38 -2.30 -22.06 16 23 C -0.61 -5.91 6.56 72.06 0.47 -5.43 16 24 C 0.11 1.44 6.16 86.48 0.53 1.98 16 25 C -0.18 -9.65 7.28 22.85 0.17 -9.48 16 26 H 0.28 14.79 8.30 -92.71 -0.77 14.02 16 27 H 0.09 4.43 8.06 -2.91 -0.02 4.41 16 28 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 29 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.41 9.46 6.20 -92.70 -0.57 8.89 16 31 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 2.59 6.88 -2.39 -0.02 2.58 16 33 H 0.16 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.14 2.20 8.14 -2.39 -0.02 2.19 16 35 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.18 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.12 1.21 5.47 -2.39 -0.01 1.20 16 39 H 0.12 6.94 4.49 -2.91 -0.01 6.93 16 Total: -1.00 -83.11 333.34 -1.10 -84.21 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.52 Total: 28.92 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 5.08 Total: -33.18 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -3.78 Total: -86.03 kcal Atomic # 8 Polarization: -69.31 SS G_CDS: -4.65 Total: -73.96 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 37.45 SS G_CDS: -0.30 Total: 37.15 kcal Total: -83.11 -1.10 -84.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365199117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.722 kcal (2) G-P(sol) polarization free energy of solvation -83.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds