Wall clock time and date at job start Tue Mar 31 2020 14:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47443 * 274.96220 * 3 2 1 5 5 H 1.48506 * 109.46963 * 34.96413 * 3 2 1 6 6 H 1.48504 * 109.46911 * 154.95852 * 3 2 1 7 7 C 1.39935 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00211 * 196.79528 * 7 2 1 9 9 C 1.41410 * 119.99577 * 16.80060 * 7 2 1 10 10 C 1.40769 * 120.21442 * 25.16144 * 9 7 2 11 11 C 1.37641 * 119.89062 * 180.02562 * 10 9 7 12 12 C 1.38538 * 120.31877 * 0.02562 * 11 10 9 13 13 C 1.39248 * 120.42664 * 359.96333 * 12 11 10 14 14 N 1.39938 * 119.94680 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00345 * 145.78595 * 14 13 12 16 16 O 1.21283 * 119.99745 * 354.89580 * 15 14 13 17 17 C 1.50696 * 120.00154 * 174.88772 * 15 14 13 18 18 N 1.46505 * 109.47081 * 180.02562 * 17 15 14 19 19 C 1.46446 * 126.08316 * 274.94799 * 18 17 15 20 20 C 1.53205 * 113.70305 * 181.76317 * 19 18 17 21 21 C 1.55557 * 106.23841 * 332.45540 * 20 19 18 22 22 S 1.67290 * 126.08071 * 95.00474 * 18 17 15 23 23 O 1.42098 * 105.40724 * 84.99588 * 22 18 17 24 24 O 1.42101 * 105.40710 * 314.73198 * 22 18 17 25 25 C 1.38280 * 120.10784 * 0.26722 * 13 12 11 26 26 H 0.97004 * 119.99404 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.05432 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.84325 * 180.02562 * 11 10 9 29 29 H 1.08000 * 119.78576 * 179.97438 * 12 11 10 30 30 H 0.97001 * 119.99684 * 325.79067 * 14 13 12 31 31 H 1.09000 * 109.46913 * 60.00581 * 17 15 14 32 32 H 1.09001 * 109.47243 * 300.00654 * 17 15 14 33 33 H 1.09004 * 108.64698 * 60.65278 * 19 18 17 34 34 H 1.08997 * 108.50950 * 302.77508 * 19 18 17 35 35 H 1.08999 * 110.10219 * 213.25577 * 20 19 18 36 36 H 1.09007 * 110.09727 * 91.64677 * 20 19 18 37 37 H 1.09007 * 111.36518 * 279.38489 * 21 20 19 38 38 H 1.09000 * 111.36877 * 154.59271 * 21 20 19 39 39 H 1.07997 * 120.16038 * 179.72439 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3850 2.1070 -1.3948 5 1 1.4962 2.6201 0.8024 6 1 3.5884 1.4120 0.5926 7 6 2.0080 -1.2119 0.0005 8 1 3.0534 -1.2317 0.2708 9 6 1.3461 -2.4105 -0.3529 10 6 0.2109 -2.3742 -1.1845 11 6 -0.4285 -3.5448 -1.5239 12 6 0.0394 -4.7599 -1.0506 13 6 1.1613 -4.8112 -0.2274 14 7 1.6250 -6.0440 0.2455 15 6 2.9465 -6.2467 0.4155 16 8 3.7396 -5.3959 0.0722 17 6 3.4386 -7.5306 1.0323 18 7 4.9015 -7.5069 1.1076 19 6 5.8264 -7.8903 0.0389 20 6 7.3024 -7.7966 0.4387 21 6 7.3861 -6.7012 1.5399 22 16 5.8126 -7.0383 2.4300 23 8 5.9152 -8.1962 3.2472 24 8 5.2115 -5.8381 2.8964 25 6 1.8144 -3.6455 0.1286 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1578 -1.4293 -1.5556 28 1 -1.2992 -3.5161 -2.1623 29 1 -0.4692 -5.6732 -1.3220 30 1 0.9952 -6.7526 0.4508 31 1 3.1196 -8.3737 0.4196 32 1 3.0251 -7.6336 2.0356 33 1 5.6559 -7.2404 -0.8195 34 1 5.6094 -8.9173 -0.2547 35 1 7.9062 -7.5094 -0.4221 36 1 7.6446 -8.7528 0.8347 37 1 7.3905 -5.7012 1.1059 38 1 8.2494 -6.8541 2.1876 39 1 2.6820 -3.6840 0.7706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412974019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:22 Heat of formation + Delta-G solvation = -65.615263 kcal Electronic energy + Delta-G solvation = -25183.682935 eV Core-core repulsion = 21411.811165 eV Total energy + Delta-G solvation = -3771.871771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.70774 -37.65553 -37.19873 -36.70079 -35.92320 -34.39427 -33.32069 -32.94332 -29.77544 -29.00803 -27.33710 -25.88865 -25.23206 -22.33072 -21.65676 -20.82340 -19.71426 -18.99149 -17.84758 -17.26280 -17.08721 -16.78884 -15.85417 -15.59091 -15.23180 -15.03265 -14.79764 -14.62898 -14.36568 -13.93540 -13.49987 -13.28668 -13.23687 -12.85306 -12.75446 -12.22876 -12.15238 -12.00613 -11.91799 -11.78895 -11.60801 -11.24612 -11.10438 -11.07833 -10.86848 -10.65910 -10.41843 -10.19766 -9.76187 -9.52623 -9.21900 -9.01554 -8.70463 -7.40593 -6.87834 -6.66870 -4.28951 0.08898 2.25465 2.61403 2.87181 3.12542 3.18263 3.23311 3.38743 3.44401 3.56598 3.68422 4.00695 4.05271 4.32572 4.60481 4.67016 4.72309 4.97871 5.04847 5.12426 5.23525 5.29664 5.44737 5.54105 5.74066 5.78511 6.23764 6.28586 6.42913 6.80249 7.06848 7.09371 7.14138 7.30332 7.60493 7.77977 8.01157 8.15244 8.21737 8.30812 8.67045 8.77696 8.99053 9.03377 10.26173 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.003562 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.257147 B = 7859.913274 C = 8982.579248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.078 0.922 9 C 0.119 3.881 10 C -0.172 4.172 11 C -0.093 4.093 12 C -0.262 4.262 13 C 0.151 3.849 14 N -0.669 5.669 15 C 0.480 3.520 16 O -0.501 6.501 17 C 0.145 3.855 18 N -0.970 5.970 19 C 0.080 3.920 20 C -0.121 4.121 21 C -0.591 4.591 22 S 2.563 3.437 23 O -0.956 6.956 24 O -0.939 6.939 25 C -0.209 4.209 26 H 0.279 0.721 27 H 0.118 0.882 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.398 0.602 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.137 0.863 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.325 -15.846 0.359 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.192 4.192 11 C -0.113 4.113 12 C -0.283 4.283 13 C 0.060 3.940 14 N -0.315 5.315 15 C 0.264 3.736 16 O -0.375 6.375 17 C 0.017 3.983 18 N -0.809 5.809 19 C -0.046 4.046 20 C -0.160 4.160 21 C -0.722 4.722 22 S 2.659 3.341 23 O -0.945 6.945 24 O -0.929 6.929 25 C -0.230 4.230 26 H 0.090 0.910 27 H 0.136 0.864 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.232 0.768 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.164 0.836 38 H 0.156 0.844 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.364 -15.035 1.148 18.297 hybrid contribution 0.261 0.462 -0.564 0.774 sum 10.625 -14.574 0.584 18.045 Atomic orbital electron populations 1.69836 1.07523 1.29017 1.35780 1.25898 0.94730 1.01248 0.92267 0.86295 0.80708 0.80655 0.79040 1.19398 1.20326 1.18531 1.19613 0.97850 0.90943 1.40314 0.90336 1.17500 0.90884 0.91669 0.88333 1.21340 0.99388 0.96832 1.01601 1.20454 0.98510 0.92755 0.99535 1.20025 1.02438 0.96842 1.09031 1.17423 0.96126 0.83399 0.97099 1.43451 1.06959 1.15294 1.65752 1.21224 0.82755 0.89636 0.80000 1.90728 1.54457 1.44734 1.47536 1.20768 0.78012 0.96476 1.03081 1.56589 1.11241 1.83021 1.30091 1.21584 0.87577 1.02460 0.92970 1.22370 0.95604 0.98141 0.99897 1.30748 1.20859 1.08574 1.11972 1.06733 0.78098 0.75147 0.74132 1.93637 1.86248 1.49666 1.64981 1.93682 1.73056 1.46984 1.79145 1.21034 1.04456 0.90960 1.06576 0.91010 0.86371 0.89128 0.89355 0.76837 0.87368 0.87538 0.90115 0.90329 0.87172 0.88806 0.83568 0.84428 0.87383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.12 10.94 55.55 0.61 -20.52 16 2 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 3 Si 0.91 19.52 29.59 -169.99 -5.03 14.49 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.46 -12.89 9.05 -37.74 -0.34 -13.23 16 8 H 0.08 2.20 7.90 -52.49 -0.41 1.78 16 9 C 0.12 3.35 5.57 -106.85 -0.59 2.76 16 10 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 11 C -0.09 -2.21 10.02 -39.69 -0.40 -2.60 16 12 C -0.26 -5.78 9.97 -39.10 -0.39 -6.17 16 13 C 0.15 3.46 6.25 -83.77 -0.52 2.93 16 14 N -0.67 -11.70 5.34 -9.91 -0.05 -11.76 16 15 C 0.48 8.30 7.63 -10.99 -0.08 8.22 16 16 O -0.50 -10.90 14.18 5.56 0.08 -10.82 16 17 C 0.15 1.69 6.72 -5.19 -0.03 1.66 16 18 N -0.97 -11.36 2.82 -115.58 -0.33 -11.69 16 19 C 0.08 0.69 6.84 -3.97 -0.03 0.66 16 20 C -0.12 -0.77 6.62 -25.27 -0.17 -0.94 16 21 C -0.59 -4.76 7.65 38.52 0.29 -4.46 16 22 S 2.56 31.99 6.19 -107.50 -0.67 31.32 16 23 O -0.96 -13.41 18.14 -57.37 -1.04 -14.45 16 24 O -0.94 -16.57 18.04 -57.37 -1.03 -17.61 16 25 C -0.21 -5.56 8.39 -38.68 -0.32 -5.89 16 26 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 27 H 0.12 3.23 6.17 -52.48 -0.32 2.90 16 28 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.40 5.12 8.82 -40.82 -0.36 4.76 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.15 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 3.03 6.48 -52.49 -0.34 2.69 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -37.78 344.03 -10.10 -47.88 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.80 Total: 8.06 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -3.02 Total: -20.10 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.23 Total: -43.96 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -2.00 Total: -42.88 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Atomic # 16 Polarization: 31.99 SS G_CDS: -0.67 Total: 31.32 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.78 -10.10 -47.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412974019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.738 kcal (2) G-P(sol) polarization free energy of solvation -37.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds