Wall clock time and date at job start Tue Mar 31 2020 14:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47443 * 274.96220 * 3 2 1 5 5 H 1.48506 * 109.46963 * 34.96413 * 3 2 1 6 6 H 1.48504 * 109.46911 * 154.95852 * 3 2 1 7 7 C 1.39935 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00211 * 196.79528 * 7 2 1 9 9 C 1.41410 * 119.99577 * 16.80060 * 7 2 1 10 10 C 1.40769 * 120.21442 * 25.16144 * 9 7 2 11 11 C 1.37641 * 119.89062 * 180.02562 * 10 9 7 12 12 C 1.38538 * 120.31877 * 0.02562 * 11 10 9 13 13 C 1.39248 * 120.42664 * 359.96333 * 12 11 10 14 14 N 1.39938 * 119.94680 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00345 * 145.78595 * 14 13 12 16 16 O 1.21283 * 119.99745 * 354.89580 * 15 14 13 17 17 C 1.50696 * 120.00154 * 174.88772 * 15 14 13 18 18 N 1.46505 * 109.47081 * 180.02562 * 17 15 14 19 19 C 1.46446 * 126.08316 * 274.94799 * 18 17 15 20 20 C 1.53205 * 113.70305 * 181.76317 * 19 18 17 21 21 C 1.55557 * 106.23841 * 332.45540 * 20 19 18 22 22 S 1.67290 * 126.08071 * 95.00474 * 18 17 15 23 23 O 1.42098 * 105.40724 * 84.99588 * 22 18 17 24 24 O 1.42101 * 105.40710 * 314.73198 * 22 18 17 25 25 C 1.38280 * 120.10784 * 0.26722 * 13 12 11 26 26 H 0.97004 * 119.99404 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.05432 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.84325 * 180.02562 * 11 10 9 29 29 H 1.08000 * 119.78576 * 179.97438 * 12 11 10 30 30 H 0.97001 * 119.99684 * 325.79067 * 14 13 12 31 31 H 1.09000 * 109.46913 * 60.00581 * 17 15 14 32 32 H 1.09001 * 109.47243 * 300.00654 * 17 15 14 33 33 H 1.09004 * 108.64698 * 60.65278 * 19 18 17 34 34 H 1.08997 * 108.50950 * 302.77508 * 19 18 17 35 35 H 1.08999 * 110.10219 * 213.25577 * 20 19 18 36 36 H 1.09007 * 110.09727 * 91.64677 * 20 19 18 37 37 H 1.09007 * 111.36518 * 279.38489 * 21 20 19 38 38 H 1.09000 * 111.36877 * 154.59271 * 21 20 19 39 39 H 1.07997 * 120.16038 * 179.72439 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3850 2.1070 -1.3948 5 1 1.4962 2.6201 0.8024 6 1 3.5884 1.4120 0.5926 7 6 2.0080 -1.2119 0.0005 8 1 3.0534 -1.2317 0.2708 9 6 1.3461 -2.4105 -0.3529 10 6 0.2109 -2.3742 -1.1845 11 6 -0.4285 -3.5448 -1.5239 12 6 0.0394 -4.7599 -1.0506 13 6 1.1613 -4.8112 -0.2274 14 7 1.6250 -6.0440 0.2455 15 6 2.9465 -6.2467 0.4155 16 8 3.7396 -5.3959 0.0722 17 6 3.4386 -7.5306 1.0323 18 7 4.9015 -7.5069 1.1076 19 6 5.8264 -7.8903 0.0389 20 6 7.3024 -7.7966 0.4387 21 6 7.3861 -6.7012 1.5399 22 16 5.8126 -7.0383 2.4300 23 8 5.9152 -8.1962 3.2472 24 8 5.2115 -5.8381 2.8964 25 6 1.8144 -3.6455 0.1286 26 1 -0.4849 0.8401 -0.0004 27 1 -0.1578 -1.4293 -1.5556 28 1 -1.2992 -3.5161 -2.1623 29 1 -0.4692 -5.6732 -1.3220 30 1 0.9952 -6.7526 0.4508 31 1 3.1196 -8.3737 0.4196 32 1 3.0251 -7.6336 2.0356 33 1 5.6559 -7.2404 -0.8195 34 1 5.6094 -8.9173 -0.2547 35 1 7.9062 -7.5094 -0.4221 36 1 7.6446 -8.7528 0.8347 37 1 7.3905 -5.7012 1.1059 38 1 8.2494 -6.8541 2.1876 39 1 2.6820 -3.6840 0.7706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412974019.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:21 Heat of formation + Delta-G solvation = -95.414453 kcal Electronic energy + Delta-G solvation = -25184.975125 eV Core-core repulsion = 21411.811165 eV Total energy + Delta-G solvation = -3773.163960 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19087 -39.11227 -38.34568 -37.77424 -37.00219 -36.15097 -34.82739 -34.09944 -31.75109 -30.49683 -28.50462 -27.26714 -26.74403 -23.46095 -22.90821 -22.65762 -21.30776 -20.03409 -19.51985 -18.49844 -18.10117 -17.83415 -17.38865 -16.83611 -16.75063 -16.46904 -16.29362 -15.76943 -15.57929 -15.15761 -14.93933 -14.66578 -14.22744 -14.18719 -13.98737 -13.74375 -13.52534 -13.26194 -13.10495 -13.05772 -12.92883 -12.78402 -12.74688 -12.42877 -12.18929 -12.04163 -11.95277 -11.53051 -11.44709 -11.18692 -10.96357 -10.77840 -9.88459 -9.39729 -8.74817 -8.60575 -6.38240 -0.79877 0.87545 0.99819 1.33928 1.37896 1.46844 1.48215 1.83210 2.19814 2.30217 2.57143 2.72263 2.91013 3.32877 3.59588 3.70761 3.85269 3.96509 4.03117 4.26484 4.42374 4.47689 4.54975 4.64749 4.68844 4.87406 4.98816 5.05378 5.09524 5.11573 5.13166 5.24950 5.32864 5.47460 5.77514 5.88153 6.07823 6.11470 6.35410 6.67369 6.70429 6.93266 7.01141 7.38532 8.32315 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.003562 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.257147 B = 7859.913274 C = 8982.579248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.256 1.256 5 H -0.261 1.261 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.088 3.912 10 C -0.198 4.198 11 C -0.092 4.092 12 C -0.248 4.248 13 C 0.160 3.840 14 N -0.660 5.660 15 C 0.472 3.528 16 O -0.552 6.552 17 C 0.148 3.852 18 N -0.975 5.975 19 C 0.070 3.930 20 C -0.118 4.118 21 C -0.563 4.563 22 S 2.546 3.454 23 O -0.978 6.978 24 O -1.008 7.008 25 C -0.240 4.240 26 H 0.289 0.711 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.136 0.864 30 H 0.423 0.577 31 H 0.161 0.839 32 H 0.122 0.878 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.121 0.879 37 H 0.142 0.858 38 H 0.172 0.828 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -18.361 -0.870 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.181 1.181 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.535 4.535 8 H 0.076 0.924 9 C 0.086 3.914 10 C -0.218 4.218 11 C -0.110 4.110 12 C -0.269 4.269 13 C 0.066 3.934 14 N -0.308 5.308 15 C 0.258 3.742 16 O -0.428 6.428 17 C 0.020 3.980 18 N -0.815 5.815 19 C -0.055 4.055 20 C -0.157 4.157 21 C -0.698 4.698 22 S 2.647 3.353 23 O -0.967 6.967 24 O -0.998 6.998 25 C -0.262 4.262 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.142 0.858 29 H 0.154 0.846 30 H 0.262 0.738 31 H 0.178 0.822 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.139 0.861 37 H 0.160 0.840 38 H 0.190 0.810 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.747 -17.624 -0.048 20.642 hybrid contribution 0.152 1.063 -0.240 1.100 sum 10.899 -16.560 -0.288 19.827 Atomic orbital electron populations 1.69859 1.08676 1.30521 1.35761 1.26686 0.95618 1.04174 0.91155 0.85219 0.78856 0.76030 0.79706 1.18082 1.18471 1.19178 1.19738 0.97402 0.92912 1.43450 0.92381 1.17831 0.92022 0.92306 0.89275 1.21293 0.99968 0.97686 1.02822 1.20860 0.98874 0.92213 0.99100 1.20495 1.01408 0.98113 1.06852 1.17519 0.95493 0.84403 0.95977 1.43401 1.08017 1.14067 1.65321 1.22462 0.82014 0.91031 0.78682 1.90713 1.55681 1.46956 1.49490 1.21004 0.78236 0.94428 1.04325 1.56591 1.11585 1.82664 1.30615 1.21902 0.88381 1.03769 0.91472 1.22588 0.94426 0.98583 1.00084 1.30596 1.17776 1.09320 1.12098 1.06983 0.79867 0.73753 0.74722 1.93599 1.87081 1.49656 1.66411 1.93605 1.75811 1.49338 1.81064 1.20942 1.04711 0.92586 1.07937 0.89981 0.87812 0.85781 0.84626 0.73808 0.82155 0.85991 0.91802 0.87108 0.84663 0.86085 0.83980 0.81033 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.11 10.94 21.82 0.24 -44.88 16 2 C 0.04 2.09 5.16 85.25 0.44 2.53 16 3 Si 0.98 41.44 29.59 68.60 2.03 43.46 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.51 -30.57 9.05 23.46 0.21 -30.36 16 8 H 0.06 3.58 7.90 -2.91 -0.02 3.55 16 9 C 0.09 5.27 5.57 -21.31 -0.12 5.16 16 10 C -0.20 -10.89 8.69 22.75 0.20 -10.69 16 11 C -0.09 -4.23 10.02 22.20 0.22 -4.01 16 12 C -0.25 -10.38 9.97 22.58 0.23 -10.15 16 13 C 0.16 7.29 6.25 38.10 0.24 7.53 16 14 N -0.66 -22.32 5.34 -303.66 -1.62 -23.95 16 15 C 0.47 16.23 7.63 87.66 0.67 16.90 16 16 O -0.55 -25.07 14.18 -3.04 -0.04 -25.12 16 17 C 0.15 3.18 6.72 85.63 0.58 3.75 16 18 N -0.97 -21.54 2.82 -519.59 -1.47 -23.01 16 19 C 0.07 1.01 6.84 86.46 0.59 1.60 16 20 C -0.12 -1.07 6.62 31.54 0.21 -0.86 16 21 C -0.56 -7.94 7.65 72.86 0.56 -7.38 16 22 S 2.55 63.57 6.19 -56.49 -0.35 63.22 16 23 O -0.98 -26.91 18.14 -127.81 -2.32 -29.23 16 24 O -1.01 -38.13 18.04 -127.81 -2.31 -40.44 16 25 C -0.24 -13.54 8.39 22.85 0.19 -13.35 16 26 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 27 H 0.10 5.90 6.17 -2.91 -0.02 5.89 16 28 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 29 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.42 9.68 8.82 -92.71 -0.82 8.86 16 31 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.17 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 4.74 6.48 -2.91 -0.02 4.73 16 Total: -1.00 -91.31 344.03 -1.35 -92.66 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.27 Total: 26.59 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 4.21 Total: -39.33 kcal Atomic # 7 Polarization: -88.98 SS G_CDS: -2.85 Total: -91.83 kcal Atomic # 8 Polarization: -90.12 SS G_CDS: -4.67 Total: -94.78 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 16 Polarization: 63.57 SS G_CDS: -0.35 Total: 63.22 kcal Total: -91.31 -1.35 -92.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412974019.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.756 kcal (2) G-P(sol) polarization free energy of solvation -91.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds