Wall clock time and date at job start Tue Mar 31 2020 14:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86794 * 120.00207 * 2 1 4 4 H 1.48499 * 109.47018 * 270.00151 * 3 2 1 5 5 H 1.48497 * 109.47289 * 30.00119 * 3 2 1 6 6 H 1.48502 * 109.47130 * 150.00108 * 3 2 1 7 7 C 1.40278 * 119.99435 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99748 * 182.46308 * 7 2 1 9 9 C 1.40869 * 120.00400 * 2.46295 * 7 2 1 10 10 C 1.40704 * 120.32993 * 323.11617 * 9 7 2 11 11 C 1.37584 * 119.88501 * 180.02562 * 10 9 7 12 12 C 1.38839 * 120.57493 * 359.72447 * 11 10 9 13 13 C 1.38195 * 120.67885 * 0.55605 * 12 11 10 14 14 C 1.39254 * 120.09075 * 359.44640 * 13 12 11 15 15 C 1.47383 * 120.28620 * 180.29419 * 14 13 12 16 16 O 1.21629 * 119.99805 * 174.37927 * 15 14 13 17 17 N 1.34781 * 120.00076 * 354.38056 * 15 14 13 18 18 C 1.39965 * 119.99756 * 184.60741 * 17 15 14 19 19 C 1.39267 * 119.88305 * 143.81182 * 18 17 15 20 20 C 1.37902 * 120.39628 * 179.97438 * 19 18 17 21 21 C 1.38595 * 119.98657 * 0.02562 * 20 19 18 22 22 O 1.35347 * 133.71947 * 179.97438 * 21 20 19 23 23 C 1.34367 * 108.19577 * 180.02562 * 22 21 20 24 24 O 1.35184 * 124.93221 * 179.97438 * 23 22 21 25 25 N 1.30625 * 110.14059 * 359.97438 * 23 22 21 26 26 C 1.36173 * 108.72745 * 0.02562 * 25 23 22 27 27 C 1.38392 * 119.88222 * 323.52820 * 18 17 15 28 28 H 0.97006 * 119.99604 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.05963 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.71492 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.65947 * 180.28105 * 12 11 10 32 32 H 1.08003 * 119.95642 * 179.71727 * 13 12 11 33 33 H 0.97002 * 119.99656 * 4.60605 * 17 15 14 34 34 H 1.08005 * 119.80463 * 359.94838 * 19 18 17 35 35 H 1.08002 * 120.00705 * 180.02562 * 20 19 18 36 36 H 0.96695 * 113.99785 * 270.00074 * 24 23 22 37 37 H 1.08000 * 120.16171 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0463 -1.4001 5 1 1.4378 2.6526 0.7000 6 1 3.5379 1.4400 0.7000 7 6 2.0075 -1.2149 -0.0005 8 1 3.0868 -1.2154 0.0397 9 6 1.3041 -2.4343 -0.0535 10 6 0.0814 -2.5793 0.6273 11 6 -0.5977 -3.7745 0.5698 12 6 -0.0901 -4.8408 -0.1602 13 6 1.1115 -4.7261 -0.8331 14 6 1.8222 -3.5292 -0.7940 15 6 3.1009 -3.4000 -1.5154 16 8 3.6663 -2.3242 -1.5630 17 7 3.6437 -4.4741 -2.1223 18 6 4.9033 -4.3753 -2.7245 19 6 5.7831 -5.4538 -2.6740 20 6 7.0265 -5.3682 -3.2641 21 6 7.4071 -4.2036 -3.9120 22 8 8.5274 -3.8217 -4.5683 23 6 8.3496 -2.5634 -5.0049 24 8 9.2612 -1.8503 -5.7034 25 7 7.1679 -2.1293 -4.6565 26 6 6.5265 -3.1128 -3.9669 27 6 5.2679 -3.2084 -3.3731 28 1 -0.4850 0.8401 0.0004 29 1 -0.3234 -1.7539 1.1941 30 1 -1.5363 -3.8827 1.0932 31 1 -0.6377 -5.7709 -0.1990 32 1 1.4978 -5.5645 -1.3938 33 1 3.1614 -5.3155 -2.1418 34 1 5.4899 -6.3625 -2.1692 35 1 7.7036 -6.2086 -3.2215 36 1 9.8630 -1.3331 -5.1509 37 1 4.5832 -2.3743 -3.4152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001440303109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:38 Heat of formation + Delta-G solvation = 0.419910 kcal Electronic energy + Delta-G solvation = -25842.258021 eV Core-core repulsion = 21937.805800 eV Total energy + Delta-G solvation = -3904.452222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.20565 -39.85500 -38.33572 -37.64910 -36.59613 -34.79185 -34.03015 -33.45024 -30.55505 -29.84872 -29.61721 -28.38863 -25.56852 -23.92513 -23.15726 -22.11631 -21.94619 -20.94751 -19.77372 -19.42684 -18.35531 -17.67260 -17.36047 -16.99163 -16.26012 -15.58736 -15.25770 -14.86341 -14.70231 -14.34840 -14.31388 -14.05355 -13.58824 -13.08808 -13.00517 -12.78533 -12.76520 -12.45016 -12.28546 -11.69175 -11.56633 -11.38401 -11.18671 -11.08758 -10.78985 -10.62666 -10.49541 -10.11569 -9.86534 -9.80583 -9.37903 -8.62621 -8.39299 -7.93445 -7.66689 -7.42188 -6.82766 -4.49904 0.58905 1.22461 1.82351 2.19428 2.31597 2.74947 3.08377 3.16010 3.21212 3.28641 3.60942 3.67994 3.94618 4.04349 4.51161 4.61484 4.88072 5.01282 5.07492 5.28784 5.49623 5.53755 5.77563 5.85805 6.02414 6.04784 6.19442 6.23818 6.30327 6.44631 6.52774 6.86868 6.87841 7.00363 7.07615 7.17524 7.36832 7.50032 7.51333 7.77928 7.86780 8.05183 8.12940 8.57052 8.72113 8.78833 9.10352 10.09044 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.003794 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.563429 B = 7377.721328 C = 9289.444198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.068 3.932 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.412 4.412 8 H 0.102 0.898 9 C 0.144 3.856 10 C -0.142 4.142 11 C -0.097 4.097 12 C -0.239 4.239 13 C -0.060 4.060 14 C -0.262 4.262 15 C 0.561 3.439 16 O -0.514 6.514 17 N -0.686 5.686 18 C 0.170 3.830 19 C -0.116 4.116 20 C -0.075 4.075 21 C -0.008 4.008 22 O -0.230 6.230 23 C 0.408 3.592 24 O -0.410 6.410 25 N -0.458 5.458 26 C 0.050 3.950 27 C -0.067 4.067 28 H 0.283 0.717 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.407 0.593 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.418 0.582 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.908 -7.959 -4.565 14.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.150 4.150 3 Si 0.746 3.254 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.440 4.440 8 H 0.120 0.880 9 C 0.140 3.860 10 C -0.161 4.161 11 C -0.116 4.116 12 C -0.258 4.258 13 C -0.079 4.079 14 C -0.267 4.267 15 C 0.357 3.643 16 O -0.390 6.390 17 N -0.333 5.333 18 C 0.072 3.928 19 C -0.136 4.136 20 C -0.095 4.095 21 C -0.057 4.057 22 O -0.124 6.124 23 C 0.158 3.842 24 O -0.218 6.218 25 N -0.201 5.201 26 C -0.063 4.063 27 C -0.089 4.089 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.244 0.756 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.278 0.722 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.627 -6.625 -5.187 13.555 hybrid contribution 0.731 -0.081 0.233 0.771 sum 11.357 -6.706 -4.954 14.090 Atomic orbital electron populations 1.69680 1.07705 1.29629 1.35074 1.26114 0.94868 1.01904 0.92077 0.86069 0.80241 0.79475 0.79592 1.19154 1.20353 1.18314 1.20107 0.96338 0.89360 1.38179 0.88047 1.17492 0.90908 0.91045 0.86585 1.21575 0.97060 0.96149 1.01353 1.20880 0.98132 0.94056 0.98524 1.20326 0.98839 0.98768 1.07897 1.20633 0.94895 0.94905 0.97419 1.19319 0.98277 0.98195 1.10859 1.18663 0.85588 0.82468 0.77568 1.90724 1.62098 1.25920 1.60248 1.43813 1.16848 1.15950 1.56720 1.17459 0.87178 0.94116 0.94046 1.20841 0.91873 0.99539 1.01384 1.19517 0.96635 0.94362 0.98944 1.19954 0.85828 0.98440 1.01515 1.84429 1.38197 1.30754 1.59064 1.22423 0.88858 0.80408 0.92534 1.84893 1.46486 1.59481 1.30950 1.71059 1.04605 1.28762 1.15656 1.19363 0.96455 0.89602 1.00858 1.20475 0.93971 0.99577 0.94863 0.90629 0.85504 0.88900 0.88914 0.89153 0.75618 0.83812 0.84437 0.72230 0.82473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.01 10.81 55.56 0.60 -19.41 16 2 C 0.07 1.72 5.40 -17.30 -0.09 1.62 16 3 Si 0.92 19.68 29.56 -169.99 -5.03 14.65 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.41 -10.91 7.57 -37.82 -0.29 -11.20 16 8 H 0.10 2.78 6.06 -52.49 -0.32 2.46 16 9 C 0.14 3.69 5.54 -106.54 -0.59 3.10 16 10 C -0.14 -3.46 8.63 -38.89 -0.34 -3.80 16 11 C -0.10 -2.08 10.01 -39.60 -0.40 -2.48 16 12 C -0.24 -4.76 10.03 -39.37 -0.39 -5.15 16 13 C -0.06 -1.18 9.53 -39.22 -0.37 -1.55 16 14 C -0.26 -5.98 5.92 -104.37 -0.62 -6.60 16 15 C 0.56 12.14 7.55 -12.54 -0.09 12.04 16 16 O -0.51 -12.69 11.15 5.25 0.06 -12.63 16 17 N -0.69 -11.37 5.28 -10.84 -0.06 -11.42 16 18 C 0.17 2.68 6.27 -83.70 -0.52 2.15 16 19 C -0.12 -1.39 9.95 -39.32 -0.39 -1.79 16 20 C -0.08 -0.88 10.05 -39.57 -0.40 -1.28 16 21 C -0.01 -0.11 7.42 -38.68 -0.29 -0.40 16 22 O -0.23 -3.20 10.79 -20.72 -0.22 -3.43 16 23 C 0.41 5.60 9.54 52.25 0.50 6.10 16 24 O -0.41 -3.96 13.62 -40.54 -0.55 -4.51 16 25 N -0.46 -7.74 11.38 -12.80 -0.15 -7.89 16 26 C 0.05 0.85 7.23 -84.70 -0.61 0.24 16 27 C -0.07 -1.21 8.73 -39.06 -0.34 -1.55 16 28 H 0.28 6.50 8.29 -40.82 -0.34 6.16 16 29 H 0.13 3.18 6.39 -52.49 -0.34 2.85 16 30 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.09 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.09 1.40 6.42 -52.48 -0.34 1.07 16 33 H 0.41 5.42 6.87 -40.82 -0.28 5.14 16 34 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.42 1.47 9.06 45.56 0.41 1.88 16 37 H 0.16 3.27 6.31 -52.49 -0.33 2.93 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -31.81 324.91 -7.70 -39.51 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -2.01 Total: 10.77 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -5.24 Total: -10.54 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.40 Total: -38.72 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.72 Total: -20.57 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.81 -7.70 -39.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440303109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.931 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds