Wall clock time and date at job start Tue Mar 31 2020 14:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86794 * 120.00207 * 2 1 4 4 H 1.48499 * 109.47018 * 270.00151 * 3 2 1 5 5 H 1.48497 * 109.47289 * 30.00119 * 3 2 1 6 6 H 1.48502 * 109.47130 * 150.00108 * 3 2 1 7 7 C 1.40278 * 119.99435 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99748 * 182.46308 * 7 2 1 9 9 C 1.40869 * 120.00400 * 2.46295 * 7 2 1 10 10 C 1.40704 * 120.32993 * 323.11617 * 9 7 2 11 11 C 1.37584 * 119.88501 * 180.02562 * 10 9 7 12 12 C 1.38839 * 120.57493 * 359.72447 * 11 10 9 13 13 C 1.38195 * 120.67885 * 0.55605 * 12 11 10 14 14 C 1.39254 * 120.09075 * 359.44640 * 13 12 11 15 15 C 1.47383 * 120.28620 * 180.29419 * 14 13 12 16 16 O 1.21629 * 119.99805 * 174.37927 * 15 14 13 17 17 N 1.34781 * 120.00076 * 354.38056 * 15 14 13 18 18 C 1.39965 * 119.99756 * 184.60741 * 17 15 14 19 19 C 1.39267 * 119.88305 * 143.81182 * 18 17 15 20 20 C 1.37902 * 120.39628 * 179.97438 * 19 18 17 21 21 C 1.38595 * 119.98657 * 0.02562 * 20 19 18 22 22 O 1.35347 * 133.71947 * 179.97438 * 21 20 19 23 23 C 1.34367 * 108.19577 * 180.02562 * 22 21 20 24 24 O 1.35184 * 124.93221 * 179.97438 * 23 22 21 25 25 N 1.30625 * 110.14059 * 359.97438 * 23 22 21 26 26 C 1.36173 * 108.72745 * 0.02562 * 25 23 22 27 27 C 1.38392 * 119.88222 * 323.52820 * 18 17 15 28 28 H 0.97006 * 119.99604 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.05963 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.71492 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.65947 * 180.28105 * 12 11 10 32 32 H 1.08003 * 119.95642 * 179.71727 * 13 12 11 33 33 H 0.97002 * 119.99656 * 4.60605 * 17 15 14 34 34 H 1.08005 * 119.80463 * 359.94838 * 19 18 17 35 35 H 1.08002 * 120.00705 * 180.02562 * 20 19 18 36 36 H 0.96695 * 113.99785 * 270.00074 * 24 23 22 37 37 H 1.08000 * 120.16171 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0463 -1.4001 5 1 1.4378 2.6526 0.7000 6 1 3.5379 1.4400 0.7000 7 6 2.0075 -1.2149 -0.0005 8 1 3.0868 -1.2154 0.0397 9 6 1.3041 -2.4343 -0.0535 10 6 0.0814 -2.5793 0.6273 11 6 -0.5977 -3.7745 0.5698 12 6 -0.0901 -4.8408 -0.1602 13 6 1.1115 -4.7261 -0.8331 14 6 1.8222 -3.5292 -0.7940 15 6 3.1009 -3.4000 -1.5154 16 8 3.6663 -2.3242 -1.5630 17 7 3.6437 -4.4741 -2.1223 18 6 4.9033 -4.3753 -2.7245 19 6 5.7831 -5.4538 -2.6740 20 6 7.0265 -5.3682 -3.2641 21 6 7.4071 -4.2036 -3.9120 22 8 8.5274 -3.8217 -4.5683 23 6 8.3496 -2.5634 -5.0049 24 8 9.2612 -1.8503 -5.7034 25 7 7.1679 -2.1293 -4.6565 26 6 6.5265 -3.1128 -3.9669 27 6 5.2679 -3.2084 -3.3731 28 1 -0.4850 0.8401 0.0004 29 1 -0.3234 -1.7539 1.1941 30 1 -1.5363 -3.8827 1.0932 31 1 -0.6377 -5.7709 -0.1990 32 1 1.4978 -5.5645 -1.3938 33 1 3.1614 -5.3155 -2.1418 34 1 5.4899 -6.3625 -2.1692 35 1 7.7036 -6.2086 -3.2215 36 1 9.8630 -1.3331 -5.1509 37 1 4.5832 -2.3743 -3.4152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001440303109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:37 Heat of formation + Delta-G solvation = -25.104892 kcal Electronic energy + Delta-G solvation = -25843.364860 eV Core-core repulsion = 21937.805800 eV Total energy + Delta-G solvation = -3905.559060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.31290 -41.34383 -39.52320 -38.86779 -38.08601 -36.06997 -35.63371 -34.95686 -32.09758 -31.53218 -30.93952 -29.66266 -27.34613 -25.22686 -24.35646 -23.55385 -23.13794 -22.63253 -21.23418 -20.51883 -19.70560 -19.15061 -18.61148 -18.24422 -17.72802 -17.15567 -16.67101 -16.05522 -15.97345 -15.94882 -15.68940 -15.48187 -15.05039 -14.61673 -14.49822 -14.22001 -13.87778 -13.74320 -13.68723 -13.40836 -12.94468 -12.84521 -12.69335 -12.54158 -12.48589 -12.28293 -11.89532 -11.64590 -11.52661 -11.24339 -11.15291 -10.30838 -9.54893 -9.49164 -9.21742 -9.09035 -8.64977 -6.40085 -0.46089 0.00949 0.52152 0.81897 1.02226 1.22226 1.30267 1.42697 1.47341 2.07533 2.18067 2.19790 2.48075 2.61944 2.79806 3.40578 3.69193 3.81591 3.98421 4.16042 4.17392 4.28287 4.36998 4.57289 4.61159 4.81280 4.93083 5.00021 5.10478 5.11334 5.21868 5.22655 5.27103 5.34631 5.62039 5.78591 5.81538 6.07116 6.11476 6.18248 6.32593 6.39729 6.57519 6.73736 6.89124 6.96404 7.49615 8.28834 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.013352 B = 0.003794 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.563429 B = 7377.721328 C = 9289.444198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.033 3.967 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.255 1.255 6 H -0.267 1.267 7 C -0.453 4.453 8 H 0.076 0.924 9 C 0.113 3.887 10 C -0.174 4.174 11 C -0.093 4.093 12 C -0.229 4.229 13 C -0.054 4.054 14 C -0.274 4.274 15 C 0.558 3.442 16 O -0.553 6.553 17 N -0.665 5.665 18 C 0.158 3.842 19 C -0.098 4.098 20 C -0.053 4.053 21 C -0.012 4.012 22 O -0.224 6.224 23 C 0.428 3.572 24 O -0.404 6.404 25 N -0.508 5.508 26 C 0.024 3.976 27 C -0.103 4.103 28 H 0.288 0.712 29 H 0.107 0.893 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.141 0.859 33 H 0.425 0.575 34 H 0.192 0.808 35 H 0.186 0.814 36 H 0.445 0.555 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.125 -12.037 -5.083 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.181 4.181 3 Si 0.797 3.203 4 H -0.202 1.202 5 H -0.179 1.179 6 H -0.191 1.191 7 C -0.482 4.482 8 H 0.094 0.906 9 C 0.110 3.890 10 C -0.194 4.194 11 C -0.111 4.111 12 C -0.248 4.248 13 C -0.072 4.072 14 C -0.279 4.279 15 C 0.353 3.647 16 O -0.432 6.432 17 N -0.313 5.313 18 C 0.061 3.939 19 C -0.117 4.117 20 C -0.072 4.072 21 C -0.062 4.062 22 O -0.118 6.118 23 C 0.177 3.823 24 O -0.216 6.216 25 N -0.252 5.252 26 C -0.088 4.088 27 C -0.125 4.125 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.159 0.841 33 H 0.266 0.734 34 H 0.209 0.791 35 H 0.203 0.797 36 H 0.311 0.689 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.861 -10.735 -5.702 16.984 hybrid contribution 0.469 0.957 0.259 1.096 sum 12.330 -9.779 -5.443 16.652 Atomic orbital electron populations 1.69710 1.08250 1.30320 1.36866 1.26661 0.95636 1.03964 0.91834 0.85319 0.79116 0.76999 0.78912 1.20181 1.17858 1.19084 1.20015 0.95280 0.91067 1.41863 0.90585 1.17849 0.91895 0.91823 0.87451 1.21481 0.97821 0.97282 1.02808 1.21260 0.98641 0.93228 0.98010 1.20871 0.98613 0.99611 1.05656 1.21116 0.94361 0.94901 0.96854 1.19691 0.99078 0.98809 1.10284 1.18658 0.85351 0.83008 0.77692 1.90726 1.63083 1.27957 1.61476 1.43371 1.17315 1.15200 1.55459 1.17689 0.87342 0.94770 0.94078 1.21259 0.90801 0.99365 1.00297 1.20116 0.96810 0.94234 0.96078 1.20361 0.85327 0.98660 1.01863 1.84450 1.37742 1.30690 1.58907 1.22503 0.88712 0.80420 0.90618 1.84874 1.46253 1.59332 1.31134 1.71003 1.06317 1.30090 1.17797 1.19428 0.96716 0.91024 1.01629 1.20232 0.94455 0.99764 0.98040 0.90137 0.87509 0.86215 0.84567 0.84096 0.73414 0.79124 0.79680 0.68931 0.86935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.99 10.81 21.88 0.24 -43.76 16 2 C 0.03 1.79 5.40 85.37 0.46 2.25 16 3 Si 0.97 43.17 29.56 68.60 2.03 45.20 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.45 -25.90 7.57 23.41 0.18 -25.72 16 8 H 0.08 4.59 6.06 -2.91 -0.02 4.57 16 9 C 0.11 6.09 5.54 -21.11 -0.12 5.97 16 10 C -0.17 -8.76 8.63 22.72 0.20 -8.57 16 11 C -0.09 -3.83 10.01 22.26 0.22 -3.61 16 12 C -0.23 -8.21 10.03 22.40 0.22 -7.99 16 13 C -0.05 -1.95 9.53 22.50 0.21 -1.74 16 14 C -0.27 -12.61 5.92 -19.70 -0.12 -12.73 16 15 C 0.56 24.78 7.55 86.65 0.65 25.43 16 16 O -0.55 -29.43 11.15 -4.12 -0.05 -29.48 16 17 N -0.67 -21.18 5.28 -306.46 -1.62 -22.80 16 18 C 0.16 4.83 6.27 38.13 0.24 5.07 16 19 C -0.10 -1.93 9.95 22.44 0.22 -1.71 16 20 C -0.05 -1.02 10.05 22.28 0.22 -0.80 16 21 C -0.01 -0.33 7.42 22.85 0.17 -0.16 16 22 O -0.22 -5.75 10.79 8.53 0.09 -5.66 16 23 C 0.43 11.37 9.54 130.42 1.24 12.62 16 24 O -0.40 -7.09 13.62 -62.36 -0.85 -7.94 16 25 N -0.51 -17.74 11.38 -422.77 -4.81 -22.55 16 26 C 0.02 0.83 7.23 39.27 0.28 1.12 16 27 C -0.10 -3.91 8.73 22.61 0.20 -3.71 16 28 H 0.29 13.96 8.29 -92.70 -0.77 13.19 16 29 H 0.11 5.69 6.39 -2.91 -0.02 5.67 16 30 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 31 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 32 H 0.14 3.61 6.42 -2.91 -0.02 3.59 16 33 H 0.43 9.80 6.87 -92.71 -0.64 9.16 16 34 H 0.19 2.02 8.06 -2.91 -0.02 2.00 16 35 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.45 2.19 9.06 -74.06 -0.67 1.51 16 37 H 0.11 5.23 6.31 -2.91 -0.02 5.21 16 Total: -1.00 -78.44 324.91 -0.59 -79.03 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.12 Total: 22.24 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.50 Total: -14.28 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -6.19 Total: -89.11 kcal Atomic # 8 Polarization: -42.28 SS G_CDS: -0.80 Total: -43.08 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -78.44 -0.59 -79.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001440303109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.929 kcal (2) G-P(sol) polarization free energy of solvation -78.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds