Wall clock time and date at job start Tue Mar 31 2020 14:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48498 * 109.47475 * 270.00175 * 3 2 1 5 5 H 1.48501 * 109.47094 * 30.00724 * 3 2 1 6 6 H 1.48505 * 109.47043 * 150.00452 * 3 2 1 7 7 C 1.39931 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99692 * 196.79242 * 7 2 1 9 9 C 1.41402 * 120.00332 * 16.78578 * 7 2 1 10 10 C 1.40784 * 120.20957 * 25.18442 * 9 7 2 11 11 C 1.37647 * 119.89286 * 179.97438 * 10 9 7 12 12 C 1.38521 * 120.32241 * 0.02562 * 11 10 9 13 13 C 1.39270 * 120.42592 * 359.97438 * 12 11 10 14 14 N 1.39868 * 119.94625 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00035 * 145.78244 * 14 13 12 16 16 O 1.21583 * 120.00072 * 354.87639 * 15 14 13 17 17 C 1.47680 * 119.99963 * 174.88475 * 15 14 13 18 18 C 1.40002 * 119.96548 * 0.02562 * 17 15 14 19 19 C 1.36601 * 120.45769 * 180.02562 * 18 17 15 20 20 C 1.38798 * 120.21477 * 359.96073 * 19 18 17 21 21 O 1.35186 * 133.65695 * 180.02562 * 20 19 18 22 22 C 1.34390 * 108.25024 * 179.97438 * 21 20 19 23 23 O 1.35175 * 124.90912 * 179.97438 * 22 21 20 24 24 N 1.30588 * 110.18216 * 359.97438 * 22 21 20 25 25 C 1.36221 * 108.68100 * 0.02562 * 24 22 21 26 26 C 1.39210 * 133.66285 * 179.97438 * 25 24 22 27 27 C 1.38293 * 120.10408 * 0.27686 * 13 12 11 28 28 H 0.96999 * 119.99972 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.05301 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.83535 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.78860 * 179.97438 * 12 11 10 32 32 H 0.97002 * 120.00032 * 325.77199 * 14 13 12 33 33 H 1.07998 * 119.77539 * 359.97438 * 18 17 15 34 34 H 1.08001 * 119.89696 * 179.97438 * 19 18 17 35 35 H 0.96698 * 113.99946 * 359.97356 * 23 22 21 36 36 H 1.07994 * 120.26836 * 359.72593 * 26 25 24 37 37 H 1.08002 * 120.16470 * 179.73182 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2697 9 6 1.3462 -2.4102 -0.3547 10 6 0.2109 -2.3733 -1.1865 11 6 -0.4279 -3.5439 -1.5276 12 6 0.0403 -4.7592 -1.0559 13 6 1.1621 -4.8112 -0.2323 14 7 1.6266 -6.0439 0.2378 15 6 2.9483 -6.2458 0.4078 16 8 3.7427 -5.3914 0.0654 17 6 3.4316 -7.5047 1.0098 18 6 2.5162 -8.4883 1.4032 19 6 2.9521 -9.6563 1.9616 20 6 4.3099 -9.8793 2.1437 21 8 5.0269 -10.9057 2.6537 22 6 6.3300 -10.5844 2.5840 23 8 7.3446 -11.3729 3.0036 24 7 6.4742 -9.4004 2.0523 25 6 5.2417 -8.9032 1.7533 26 6 4.7977 -7.7127 1.1847 27 6 1.8145 -3.6456 0.1257 28 1 -0.4850 0.8400 0.0004 29 1 -0.1581 -1.4281 -1.5564 30 1 -1.2990 -3.5144 -2.1654 31 1 -0.4679 -5.6724 -1.3287 32 1 0.9974 -6.7536 0.4417 33 1 1.4581 -8.3222 1.2651 34 1 2.2381 -10.4087 2.2622 35 1 7.0581 -12.2192 3.3732 36 1 5.5063 -6.9546 0.8858 37 1 2.6819 -3.6844 0.7679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001449729821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:56 Heat of formation + Delta-G solvation = -4.250719 kcal Electronic energy + Delta-G solvation = -25087.194040 eV Core-core repulsion = 21182.539284 eV Total energy + Delta-G solvation = -3904.654755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.67358 -40.13428 -38.80432 -37.80572 -36.91197 -35.11122 -34.52775 -33.07986 -31.16034 -29.99464 -29.82646 -27.98891 -25.32894 -24.66222 -23.75572 -22.29136 -21.79422 -20.90351 -20.50277 -19.54621 -18.20244 -17.98641 -17.62458 -17.38950 -15.97867 -15.73992 -15.39283 -15.26269 -14.74492 -14.62038 -14.43383 -14.33211 -14.18152 -13.83690 -13.33525 -13.12388 -12.86350 -12.64038 -12.13645 -11.87737 -11.66018 -11.45553 -11.20100 -11.12778 -10.92721 -10.77847 -10.45472 -10.22532 -9.69543 -9.49725 -9.13993 -9.07038 -9.02645 -8.67941 -7.45748 -6.94199 -6.71250 -4.33406 0.42561 0.50069 1.49781 2.03082 2.56893 2.61703 2.83167 3.10117 3.11777 3.16067 3.23632 3.45436 3.76018 3.97913 4.09109 4.41614 4.60225 4.64734 4.67530 4.71090 5.01880 5.22835 5.66717 5.70655 5.71041 5.85287 5.91879 6.12905 6.23883 6.31385 6.37634 6.69688 6.99948 7.03182 7.07100 7.25467 7.30446 7.53184 7.70657 7.95113 8.09172 8.13251 8.23496 8.57392 8.69614 8.93996 8.98145 10.22129 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.002477 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.774778 B =11301.443154 C =12320.105663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.119 3.881 10 C -0.170 4.170 11 C -0.093 4.093 12 C -0.260 4.260 13 C 0.150 3.850 14 N -0.659 5.659 15 C 0.550 3.450 16 O -0.506 6.506 17 C -0.116 4.116 18 C -0.069 4.069 19 C -0.088 4.088 20 C 0.022 3.978 21 O -0.244 6.244 22 C 0.434 3.566 23 O -0.390 6.390 24 N -0.467 5.467 25 C 0.039 3.961 26 C -0.002 4.002 27 C -0.209 4.209 28 H 0.280 0.720 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.425 0.575 36 H 0.155 0.845 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -20.985 5.619 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.190 4.190 11 C -0.112 4.112 12 C -0.281 4.281 13 C 0.058 3.942 14 N -0.303 5.303 15 C 0.336 3.664 16 O -0.381 6.381 17 C -0.121 4.121 18 C -0.088 4.088 19 C -0.107 4.107 20 C -0.028 4.028 21 O -0.140 6.140 22 C 0.184 3.816 23 O -0.190 6.190 24 N -0.213 5.213 25 C -0.072 4.072 26 C -0.022 4.022 27 C -0.230 4.230 28 H 0.091 0.909 29 H 0.137 0.863 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.233 0.767 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.282 0.718 36 H 0.173 0.827 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.352 -19.571 5.183 20.941 hybrid contribution -0.763 -0.785 0.632 1.264 sum 4.589 -20.356 5.815 21.661 Atomic orbital electron populations 1.69824 1.07528 1.29134 1.35580 1.25906 0.94749 1.01301 0.92236 0.86297 0.80540 0.80473 0.79340 1.19260 1.20375 1.18557 1.19600 0.97836 0.90917 1.40316 0.90273 1.17493 0.90904 0.91629 0.88347 1.21369 0.99294 0.96903 1.01400 1.20461 0.98548 0.92684 0.99465 1.20030 1.02344 0.96949 1.08812 1.17392 0.96306 0.83048 0.97407 1.43300 1.06559 1.15314 1.65150 1.17966 0.82819 0.86155 0.79421 1.90863 1.54503 1.44437 1.48306 1.19905 0.93259 0.95801 1.03107 1.20895 1.00104 0.91584 0.96231 1.19461 0.89660 0.98975 1.02566 1.20074 0.94430 0.86691 1.01617 1.84453 1.18639 1.42002 1.68946 1.23041 0.76778 0.88785 0.92978 1.85196 1.22963 1.33311 1.77514 1.70937 1.23619 1.05696 1.21057 1.19461 0.87139 0.96805 1.03755 1.20398 0.94881 0.93799 0.93100 1.20988 1.04343 0.90962 1.06746 0.90935 0.86275 0.88985 0.89221 0.76730 0.83569 0.83982 0.71786 0.82706 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.61 10.94 55.55 0.61 -20.00 16 2 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 3 Si 0.91 19.13 29.59 -169.99 -5.03 14.10 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -12.51 9.05 -37.74 -0.34 -12.85 16 8 H 0.08 2.14 7.90 -52.49 -0.41 1.73 16 9 C 0.12 3.26 5.57 -106.85 -0.59 2.67 16 10 C -0.17 -4.42 8.69 -38.84 -0.34 -4.76 16 11 C -0.09 -2.13 10.02 -39.69 -0.40 -2.52 16 12 C -0.26 -5.58 9.97 -39.09 -0.39 -5.97 16 13 C 0.15 3.32 6.25 -83.79 -0.52 2.79 16 14 N -0.66 -11.31 5.28 -10.81 -0.06 -11.36 16 15 C 0.55 9.72 7.49 -12.40 -0.09 9.62 16 16 O -0.51 -11.19 14.08 5.29 0.07 -11.12 16 17 C -0.12 -1.57 5.87 -104.99 -0.62 -2.18 16 18 C -0.07 -0.67 9.47 -39.51 -0.37 -1.05 16 19 C -0.09 -0.77 9.99 -39.97 -0.40 -1.17 16 20 C 0.02 0.24 7.42 -38.53 -0.29 -0.05 16 21 O -0.24 -2.32 10.78 -20.31 -0.22 -2.54 16 22 C 0.43 4.34 9.53 52.23 0.50 4.84 16 23 O -0.39 -2.33 13.62 -40.51 -0.55 -2.89 16 24 N -0.47 -6.33 11.38 -12.82 -0.15 -6.48 16 25 C 0.04 0.52 7.22 -84.71 -0.61 -0.09 16 26 C 0.00 -0.03 9.64 -38.83 -0.37 -0.40 16 27 C -0.21 -5.36 8.39 -38.68 -0.32 -5.69 16 28 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 29 H 0.12 3.18 6.17 -52.48 -0.32 2.86 16 30 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 32 H 0.40 5.02 6.84 -40.82 -0.28 4.74 16 33 H 0.15 1.00 6.38 -52.49 -0.33 0.67 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.42 -0.36 9.06 45.56 0.41 0.06 16 36 H 0.16 2.29 7.64 -52.49 -0.40 1.89 16 37 H 0.11 2.81 6.48 -52.49 -0.34 2.47 16 LS Contribution 329.65 15.07 4.97 4.97 Total: -1.00 -34.47 329.65 -7.69 -42.16 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -2.08 Total: 8.14 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -5.26 Total: -14.98 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.40 Total: -37.84 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.70 Total: -16.54 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.47 -7.69 -42.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449729821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.910 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds