Wall clock time and date at job start Tue Mar 31 2020 14:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 119.99913 * 2 1 4 4 H 1.48498 * 109.47475 * 270.00175 * 3 2 1 5 5 H 1.48501 * 109.47094 * 30.00724 * 3 2 1 6 6 H 1.48505 * 109.47043 * 150.00452 * 3 2 1 7 7 C 1.39931 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99692 * 196.79242 * 7 2 1 9 9 C 1.41402 * 120.00332 * 16.78578 * 7 2 1 10 10 C 1.40784 * 120.20957 * 25.18442 * 9 7 2 11 11 C 1.37647 * 119.89286 * 179.97438 * 10 9 7 12 12 C 1.38521 * 120.32241 * 0.02562 * 11 10 9 13 13 C 1.39270 * 120.42592 * 359.97438 * 12 11 10 14 14 N 1.39868 * 119.94625 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00035 * 145.78244 * 14 13 12 16 16 O 1.21583 * 120.00072 * 354.87639 * 15 14 13 17 17 C 1.47680 * 119.99963 * 174.88475 * 15 14 13 18 18 C 1.40002 * 119.96548 * 0.02562 * 17 15 14 19 19 C 1.36601 * 120.45769 * 180.02562 * 18 17 15 20 20 C 1.38798 * 120.21477 * 359.96073 * 19 18 17 21 21 O 1.35186 * 133.65695 * 180.02562 * 20 19 18 22 22 C 1.34390 * 108.25024 * 179.97438 * 21 20 19 23 23 O 1.35175 * 124.90912 * 179.97438 * 22 21 20 24 24 N 1.30588 * 110.18216 * 359.97438 * 22 21 20 25 25 C 1.36221 * 108.68100 * 0.02562 * 24 22 21 26 26 C 1.39210 * 133.66285 * 179.97438 * 25 24 22 27 27 C 1.38293 * 120.10408 * 0.27686 * 13 12 11 28 28 H 0.96999 * 119.99972 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.05301 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.83535 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.78860 * 179.97438 * 12 11 10 32 32 H 0.97002 * 120.00032 * 325.77199 * 14 13 12 33 33 H 1.07998 * 119.77539 * 359.97438 * 18 17 15 34 34 H 1.08001 * 119.89696 * 179.97438 * 19 18 17 35 35 H 0.96698 * 113.99946 * 359.97356 * 23 22 21 36 36 H 1.07994 * 120.26836 * 359.72593 * 26 25 24 37 37 H 1.08002 * 120.16470 * 179.73182 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4398 2.6526 0.7002 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2118 -0.0005 8 1 3.0534 -1.2319 0.2697 9 6 1.3462 -2.4102 -0.3547 10 6 0.2109 -2.3733 -1.1865 11 6 -0.4279 -3.5439 -1.5276 12 6 0.0403 -4.7592 -1.0559 13 6 1.1621 -4.8112 -0.2323 14 7 1.6266 -6.0439 0.2378 15 6 2.9483 -6.2458 0.4078 16 8 3.7427 -5.3914 0.0654 17 6 3.4316 -7.5047 1.0098 18 6 2.5162 -8.4883 1.4032 19 6 2.9521 -9.6563 1.9616 20 6 4.3099 -9.8793 2.1437 21 8 5.0269 -10.9057 2.6537 22 6 6.3300 -10.5844 2.5840 23 8 7.3446 -11.3729 3.0036 24 7 6.4742 -9.4004 2.0523 25 6 5.2417 -8.9032 1.7533 26 6 4.7977 -7.7127 1.1847 27 6 1.8145 -3.6456 0.1257 28 1 -0.4850 0.8400 0.0004 29 1 -0.1581 -1.4281 -1.5564 30 1 -1.2990 -3.5144 -2.1654 31 1 -0.4679 -5.6724 -1.3287 32 1 0.9974 -6.7536 0.4417 33 1 1.4581 -8.3222 1.2651 34 1 2.2381 -10.4087 2.2622 35 1 7.0581 -12.2192 3.3732 36 1 5.5063 -6.9546 0.8858 37 1 2.6819 -3.6844 0.7679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001449729821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:55 Heat of formation + Delta-G solvation = -32.251784 kcal Electronic energy + Delta-G solvation = -25088.408257 eV Core-core repulsion = 21182.539284 eV Total energy + Delta-G solvation = -3905.868973 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.48927 -41.52475 -39.66157 -39.03555 -38.23053 -36.31169 -35.92434 -34.85833 -32.14472 -31.74149 -31.05641 -29.54588 -27.26087 -25.79169 -24.54109 -23.42196 -23.01639 -22.69222 -21.77129 -20.59161 -19.71502 -19.02333 -18.72415 -18.41033 -17.47386 -17.08435 -16.66274 -16.47167 -16.32643 -16.11597 -15.65469 -15.18405 -15.08904 -14.90377 -14.79118 -14.62206 -14.20739 -13.95353 -13.60040 -13.49831 -13.02564 -12.92999 -12.77438 -12.76274 -12.24939 -12.17552 -11.99382 -11.63943 -11.52865 -11.21666 -10.94306 -10.75944 -10.04939 -9.51867 -9.38484 -8.75752 -8.60431 -6.36241 -0.50592 -0.38246 0.74859 0.91179 1.01782 1.24634 1.36485 1.49181 1.49713 1.78204 1.85631 2.18374 2.22227 2.58444 2.75913 3.22874 3.51498 3.73835 3.74903 3.79528 3.94531 4.08409 4.48340 4.52721 4.65985 4.78384 4.92223 4.94747 5.02972 5.05628 5.10944 5.13090 5.22200 5.30503 5.35651 5.75265 5.77754 5.86669 6.09285 6.11676 6.34583 6.57886 6.63620 6.69250 6.94229 7.01496 7.23076 8.33637 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.022221 B = 0.002477 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.774778 B =11301.443154 C =12320.105663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.503 4.503 8 H 0.060 0.940 9 C 0.088 3.912 10 C -0.196 4.196 11 C -0.091 4.091 12 C -0.244 4.244 13 C 0.158 3.842 14 N -0.644 5.644 15 C 0.549 3.451 16 O -0.562 6.562 17 C -0.123 4.123 18 C -0.058 4.058 19 C -0.065 4.065 20 C 0.023 3.977 21 O -0.228 6.228 22 C 0.456 3.544 23 O -0.381 6.381 24 N -0.522 5.522 25 C 0.019 3.981 26 C -0.025 4.025 27 C -0.238 4.238 28 H 0.289 0.711 29 H 0.104 0.896 30 H 0.126 0.874 31 H 0.139 0.861 32 H 0.424 0.576 33 H 0.184 0.816 34 H 0.190 0.810 35 H 0.453 0.547 36 H 0.127 0.873 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.988 -24.416 6.188 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.110 4.110 12 C -0.265 4.265 13 C 0.065 3.935 14 N -0.291 5.291 15 C 0.339 3.661 16 O -0.441 6.441 17 C -0.128 4.128 18 C -0.077 4.077 19 C -0.083 4.083 20 C -0.027 4.027 21 O -0.125 6.125 22 C 0.206 3.794 23 O -0.186 6.186 24 N -0.270 5.270 25 C -0.091 4.091 26 C -0.045 4.045 27 C -0.259 4.259 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.264 0.736 33 H 0.201 0.799 34 H 0.207 0.793 35 H 0.317 0.683 36 H 0.145 0.855 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.329 -23.100 5.783 24.045 hybrid contribution -0.080 -0.026 0.511 0.518 sum 3.249 -23.127 6.293 24.187 Atomic orbital electron populations 1.69847 1.08593 1.30525 1.35687 1.26658 0.95618 1.04101 0.91257 0.85248 0.78904 0.76153 0.79635 1.18475 1.18481 1.19099 1.19728 0.97451 0.92785 1.43310 0.92133 1.17828 0.92042 0.92323 0.89328 1.21335 0.99910 0.97762 1.02603 1.20862 0.98942 0.92131 0.99059 1.20508 1.01253 0.98260 1.06485 1.17453 0.95769 0.83838 0.96480 1.43101 1.07054 1.14315 1.64597 1.18628 0.82375 0.86919 0.78210 1.90845 1.55908 1.46756 1.50564 1.19537 0.93603 0.94968 1.04649 1.21216 1.00953 0.90517 0.94981 1.19946 0.89232 0.99067 1.00019 1.20432 0.95068 0.86184 1.01049 1.84488 1.18276 1.41141 1.68571 1.23043 0.77347 0.88217 0.90834 1.85225 1.21736 1.34723 1.76963 1.70842 1.24494 1.07912 1.23722 1.19447 0.88084 0.97107 1.04448 1.20217 0.95059 0.94241 0.95005 1.20956 1.04603 0.92409 1.07952 0.89984 0.87782 0.85654 0.84360 0.73610 0.79906 0.79274 0.68328 0.85519 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.89 10.94 21.82 0.24 -43.65 16 2 C 0.04 2.05 5.16 85.25 0.44 2.49 16 3 Si 0.98 40.66 29.59 68.60 2.03 42.69 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.50 -29.54 9.05 23.46 0.21 -29.32 16 8 H 0.06 3.60 7.90 -2.91 -0.02 3.58 16 9 C 0.09 5.06 5.57 -21.31 -0.12 4.94 16 10 C -0.20 -10.50 8.69 22.75 0.20 -10.31 16 11 C -0.09 -4.06 10.02 22.20 0.22 -3.84 16 12 C -0.24 -9.81 9.97 22.59 0.23 -9.58 16 13 C 0.16 6.91 6.25 38.12 0.24 7.15 16 14 N -0.64 -21.19 5.28 -306.37 -1.62 -22.80 16 15 C 0.55 19.81 7.49 86.74 0.65 20.46 16 16 O -0.56 -26.75 14.08 -3.98 -0.06 -26.81 16 17 C -0.12 -3.28 5.87 -20.10 -0.12 -3.40 16 18 C -0.06 -0.91 9.47 22.31 0.21 -0.70 16 19 C -0.06 -0.83 9.99 22.02 0.22 -0.61 16 20 C 0.02 0.44 7.42 22.95 0.17 0.61 16 21 O -0.23 -3.62 10.78 10.02 0.11 -3.51 16 22 C 0.46 8.27 9.53 130.43 1.24 9.51 16 23 O -0.38 -3.59 13.62 -62.27 -0.85 -4.44 16 24 N -0.52 -14.23 11.38 -422.85 -4.81 -19.04 16 25 C 0.02 0.51 7.22 39.24 0.28 0.80 16 26 C -0.02 -0.74 9.64 22.76 0.22 -0.52 16 27 C -0.24 -12.85 8.39 22.85 0.19 -12.66 16 28 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 29 H 0.10 5.78 6.17 -2.91 -0.02 5.76 16 30 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 31 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.42 9.08 6.84 -92.71 -0.63 8.45 16 33 H 0.18 1.46 6.38 -2.91 -0.02 1.44 16 34 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 35 H 0.45 -2.39 9.06 -74.06 -0.67 -3.06 16 36 H 0.13 4.31 7.64 -2.91 -0.02 4.29 16 37 H 0.08 4.74 6.48 -2.91 -0.02 4.72 16 Total: -1.00 -83.47 329.65 -0.59 -84.06 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.12 Total: 18.48 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 4.49 Total: -24.98 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -6.19 Total: -85.49 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.80 Total: -34.75 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -83.47 -0.59 -84.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001449729821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.812 kcal (2) G-P(sol) polarization free energy of solvation -83.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds