Wall clock time and date at job start Tue Mar 31 2020 14:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48499 * 109.46922 * 270.00327 * 3 2 1 5 5 H 1.48496 * 109.47175 * 30.00255 * 3 2 1 6 6 H 1.48495 * 109.46987 * 150.00088 * 3 2 1 7 7 C 1.39944 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00265 * 162.22166 * 7 2 1 9 9 C 1.41398 * 120.00164 * 342.22372 * 7 2 1 10 10 C 1.40735 * 120.24463 * 335.27384 * 9 7 2 11 11 C 1.37588 * 119.75053 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24887 * 359.72206 * 11 10 9 13 13 C 1.38621 * 120.49716 * 0.55221 * 12 11 10 14 14 S 1.76201 * 119.87627 * 179.71923 * 13 12 11 15 15 O 1.42097 * 106.40273 * 156.18987 * 14 13 12 16 16 O 1.42104 * 106.39927 * 23.27288 * 14 13 12 17 17 N 1.65596 * 107.21703 * 269.73182 * 14 13 12 18 18 C 1.46502 * 120.00275 * 65.00377 * 17 14 13 19 19 C 1.53001 * 109.47179 * 164.99568 * 18 17 14 20 20 H 1.08997 * 110.85705 * 305.70148 * 19 18 17 21 21 C 1.54481 * 110.96820 * 181.90759 * 19 18 17 22 22 N 1.46766 * 105.47388 * 216.46776 * 21 19 18 23 23 C 1.34413 * 111.29789 * 17.01767 * 22 21 19 24 24 O 1.21291 * 124.93718 * 179.62495 * 23 22 21 25 25 C 1.51336 * 110.13438 * 359.56000 * 23 22 21 26 26 C 1.37642 * 120.24601 * 359.45225 * 13 12 11 27 27 H 0.96996 * 119.99345 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.12266 * 359.97438 * 10 9 7 29 29 H 1.08005 * 119.88194 * 180.02562 * 11 10 9 30 30 H 1.07994 * 119.75546 * 180.30114 * 12 11 10 31 31 H 0.97004 * 120.00140 * 244.99190 * 17 14 13 32 32 H 1.08999 * 109.46967 * 44.99604 * 18 17 14 33 33 H 1.09006 * 109.46801 * 284.99607 * 18 17 14 34 34 H 1.09006 * 110.24477 * 335.46522 * 21 19 18 35 35 H 1.09003 * 110.24458 * 97.46507 * 21 19 18 36 36 H 0.96996 * 124.34479 * 197.03725 * 22 21 19 37 37 H 1.08994 * 110.52646 * 225.11781 * 25 23 22 38 38 H 1.09000 * 110.47828 * 102.45998 * 25 23 22 39 39 H 1.08003 * 120.12459 * 180.25053 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0493 -1.2342 -0.2861 9 6 1.3516 -2.4074 0.3728 10 6 0.2235 -2.3641 1.2131 11 6 -0.4070 -3.5337 1.5703 12 6 0.0616 -4.7514 1.1011 13 6 1.1752 -4.8065 0.2775 14 16 1.7611 -6.3634 -0.3033 15 8 2.4869 -6.0994 -1.4961 16 8 0.6555 -7.2544 -0.2474 17 7 2.8633 -6.9158 0.8022 18 6 2.4323 -7.2511 2.1617 19 6 3.5222 -8.0714 2.8546 20 1 3.7883 -8.9447 2.2591 21 6 3.0830 -8.4849 4.2767 22 7 4.2987 -8.4198 5.0964 23 6 5.2586 -7.7005 4.4899 24 8 6.3595 -7.4835 4.9503 25 6 4.7667 -7.2020 3.1483 26 6 1.8218 -3.6491 -0.0927 27 1 -0.4849 0.8401 0.0004 28 1 -0.1454 -1.4164 1.5767 29 1 -1.2732 -3.5028 2.2148 30 1 -0.4423 -5.6641 1.3827 31 1 3.7944 -7.0176 0.5497 32 1 1.5119 -7.8333 2.1178 33 1 2.2556 -6.3337 2.7234 34 1 2.3340 -7.7902 4.6571 35 1 2.6872 -9.5005 4.2689 36 1 4.3968 -8.8419 5.9642 37 1 5.5272 -7.3532 2.3822 38 1 4.4907 -6.1494 3.2105 39 1 2.6868 -3.6941 -0.7377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463878924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:57 Heat of formation + Delta-G solvation = -99.969177 kcal Electronic energy + Delta-G solvation = -24863.969013 eV Core-core repulsion = 21090.607545 eV Total energy + Delta-G solvation = -3773.361468 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53817 -37.68976 -37.23830 -36.69154 -35.36779 -35.01495 -33.88199 -31.26405 -30.12246 -29.84151 -28.29260 -25.54494 -25.17946 -21.97281 -21.23452 -20.98141 -20.83841 -19.09276 -17.99778 -17.64777 -17.21742 -16.77626 -15.97981 -15.58414 -15.22061 -15.17809 -14.87359 -14.50708 -14.40206 -13.82371 -13.65168 -13.50407 -13.37826 -12.94449 -12.66513 -12.61997 -11.97047 -11.78261 -11.62434 -11.58979 -11.43480 -11.41963 -11.39472 -11.23229 -11.08727 -10.91423 -10.63688 -10.07817 -9.86813 -9.74749 -9.41076 -9.37700 -9.26928 -8.08986 -7.74727 -6.96079 -4.57315 0.93801 2.14254 2.39161 2.59569 2.98404 2.99518 3.06088 3.07913 3.46622 3.80567 4.04150 4.12513 4.20135 4.34457 4.39882 4.70646 4.96485 4.99289 5.12560 5.24177 5.34407 5.39220 5.50000 5.56452 5.78782 5.92721 6.00870 6.12363 6.50915 6.61355 6.71408 6.71803 6.78688 6.98657 7.08748 7.17740 7.33304 7.67594 7.76447 7.90005 8.00549 8.35938 8.63096 8.67505 9.99529 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.003648 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.754422 B = 7673.352983 C = 8776.827094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.118 4.118 11 C -0.121 4.121 12 C -0.151 4.151 13 C -0.631 4.631 14 S 2.690 3.310 15 O -0.970 6.970 16 O -0.974 6.974 17 N -1.122 6.122 18 C 0.129 3.871 19 C -0.108 4.108 20 H 0.101 0.899 21 C 0.106 3.894 22 N -0.734 5.734 23 C 0.521 3.479 24 O -0.537 6.537 25 C -0.158 4.158 26 C -0.125 4.125 27 H 0.284 0.716 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.414 0.586 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.410 0.590 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -12.203 7.641 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.137 4.137 11 C -0.140 4.140 12 C -0.172 4.172 13 C -0.723 4.723 14 S 2.786 3.214 15 O -0.961 6.961 16 O -0.964 6.964 17 N -0.880 5.880 18 C 0.002 3.998 19 C -0.128 4.128 20 H 0.119 0.881 21 C -0.020 4.020 22 N -0.390 5.390 23 C 0.307 3.693 24 O -0.414 6.414 25 C -0.198 4.198 26 C -0.147 4.147 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.248 0.752 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.248 0.752 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.856 -12.317 7.025 14.464 hybrid contribution 0.488 1.257 0.687 1.514 sum 3.345 -11.060 7.712 13.892 Atomic orbital electron populations 1.69780 1.07690 1.29712 1.34570 1.25939 0.94776 1.01594 0.92009 0.86255 0.80620 0.80164 0.79466 1.19278 1.19981 1.18290 1.19615 0.98379 0.91012 1.39926 0.89911 1.17681 0.91809 0.92035 0.89646 1.21635 0.97603 0.97125 0.97385 1.20808 0.99312 0.93191 1.00709 1.20077 0.97346 0.97440 1.02330 1.29709 1.09141 1.17807 1.15668 1.01650 0.72740 0.74461 0.72553 1.93550 1.72775 1.86223 1.43506 1.93512 1.52359 1.64113 1.86437 1.55586 1.24168 1.83566 1.24669 1.21229 0.96911 0.99394 0.82268 1.22385 0.95237 0.99382 0.95819 0.88068 1.22094 0.87258 1.02883 0.89739 1.46225 1.15288 1.54867 1.22585 1.20973 0.83793 0.77145 0.87374 1.90767 1.21062 1.58935 1.70610 1.22535 0.98824 1.02428 0.95989 1.20753 1.01117 0.91731 1.01066 0.90507 0.85828 0.88407 0.87575 0.75215 0.89487 0.90591 0.90116 0.89646 0.75175 0.87663 0.86738 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.40 10.97 55.55 0.61 -18.79 16 2 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.75 29.60 -169.99 -5.03 12.71 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.46 -11.53 9.05 -37.74 -0.34 -11.87 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.09 2.29 5.57 -106.82 -0.60 1.70 16 10 C -0.12 -2.81 8.70 -38.88 -0.34 -3.15 16 11 C -0.12 -2.56 10.02 -39.66 -0.40 -2.96 16 12 C -0.15 -3.02 9.53 -39.28 -0.37 -3.40 16 13 C -0.63 -12.80 5.94 -39.66 -0.24 -13.04 16 14 S 2.69 45.61 5.74 -107.50 -0.62 44.99 16 15 O -0.97 -19.23 17.27 -57.17 -0.99 -20.22 16 16 O -0.97 -18.13 16.73 -57.17 -0.96 -19.08 16 17 N -1.12 -13.06 5.93 -10.61 -0.06 -13.13 16 18 C 0.13 1.20 5.51 -4.04 -0.02 1.18 16 19 C -0.11 -0.76 3.24 -88.99 -0.29 -1.04 16 20 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 21 C 0.11 0.60 7.35 -3.12 -0.02 0.58 16 22 N -0.73 -5.59 6.24 -59.18 -0.37 -5.96 16 23 C 0.52 5.71 8.43 -10.84 -0.09 5.62 16 24 O -0.54 -8.33 18.03 5.55 0.10 -8.23 16 25 C -0.16 -1.37 6.09 -26.72 -0.16 -1.53 16 26 C -0.13 -2.87 9.26 -38.87 -0.36 -3.23 16 27 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 28 H 0.12 3.03 6.18 -52.48 -0.32 2.70 16 29 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.11 1.87 7.59 -52.49 -0.40 1.47 16 31 H 0.41 3.94 8.42 -34.47 -0.29 3.65 16 32 H 0.09 0.77 7.75 -51.93 -0.40 0.37 16 33 H 0.08 0.72 8.01 -51.93 -0.42 0.31 16 34 H 0.08 0.42 7.89 -51.93 -0.41 0.01 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.41 2.52 8.96 -40.82 -0.37 2.15 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.11 1.04 7.81 -51.93 -0.41 0.63 16 39 H 0.11 2.46 7.60 -52.48 -0.40 2.06 16 LS Contribution 344.55 15.07 5.19 5.19 Total: -1.00 -33.33 344.55 -10.09 -43.42 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.65 Total: 8.53 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: -3.32 Total: -29.45 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.18 Total: -37.87 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -1.84 Total: -47.53 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 16 Polarization: 45.61 SS G_CDS: -0.62 Total: 44.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.33 -10.09 -43.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463878924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.546 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds