Wall clock time and date at job start Tue Mar 31 2020 14:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48499 * 109.46922 * 270.00327 * 3 2 1 5 5 H 1.48496 * 109.47175 * 30.00255 * 3 2 1 6 6 H 1.48495 * 109.46987 * 150.00088 * 3 2 1 7 7 C 1.39944 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00265 * 162.22166 * 7 2 1 9 9 C 1.41398 * 120.00164 * 342.22372 * 7 2 1 10 10 C 1.40735 * 120.24463 * 335.27384 * 9 7 2 11 11 C 1.37588 * 119.75053 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24887 * 359.72206 * 11 10 9 13 13 C 1.38621 * 120.49716 * 0.55221 * 12 11 10 14 14 S 1.76201 * 119.87627 * 179.71923 * 13 12 11 15 15 O 1.42097 * 106.40273 * 156.18987 * 14 13 12 16 16 O 1.42104 * 106.39927 * 23.27288 * 14 13 12 17 17 N 1.65596 * 107.21703 * 269.73182 * 14 13 12 18 18 C 1.46502 * 120.00275 * 65.00377 * 17 14 13 19 19 C 1.53001 * 109.47179 * 164.99568 * 18 17 14 20 20 H 1.08997 * 110.85705 * 305.70148 * 19 18 17 21 21 C 1.54481 * 110.96820 * 181.90759 * 19 18 17 22 22 N 1.46766 * 105.47388 * 216.46776 * 21 19 18 23 23 C 1.34413 * 111.29789 * 17.01767 * 22 21 19 24 24 O 1.21291 * 124.93718 * 179.62495 * 23 22 21 25 25 C 1.51336 * 110.13438 * 359.56000 * 23 22 21 26 26 C 1.37642 * 120.24601 * 359.45225 * 13 12 11 27 27 H 0.96996 * 119.99345 * 359.97438 * 1 2 3 28 28 H 1.08007 * 120.12266 * 359.97438 * 10 9 7 29 29 H 1.08005 * 119.88194 * 180.02562 * 11 10 9 30 30 H 1.07994 * 119.75546 * 180.30114 * 12 11 10 31 31 H 0.97004 * 120.00140 * 244.99190 * 17 14 13 32 32 H 1.08999 * 109.46967 * 44.99604 * 18 17 14 33 33 H 1.09006 * 109.46801 * 284.99607 * 18 17 14 34 34 H 1.09006 * 110.24477 * 335.46522 * 21 19 18 35 35 H 1.09003 * 110.24458 * 97.46507 * 21 19 18 36 36 H 0.96996 * 124.34479 * 197.03725 * 22 21 19 37 37 H 1.08994 * 110.52646 * 225.11781 * 25 23 22 38 38 H 1.09000 * 110.47828 * 102.45998 * 25 23 22 39 39 H 1.08003 * 120.12459 * 180.25053 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6526 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0080 -1.2120 -0.0005 8 1 3.0493 -1.2342 -0.2861 9 6 1.3516 -2.4074 0.3728 10 6 0.2235 -2.3641 1.2131 11 6 -0.4070 -3.5337 1.5703 12 6 0.0616 -4.7514 1.1011 13 6 1.1752 -4.8065 0.2775 14 16 1.7611 -6.3634 -0.3033 15 8 2.4869 -6.0994 -1.4961 16 8 0.6555 -7.2544 -0.2474 17 7 2.8633 -6.9158 0.8022 18 6 2.4323 -7.2511 2.1617 19 6 3.5222 -8.0714 2.8546 20 1 3.7883 -8.9447 2.2591 21 6 3.0830 -8.4849 4.2767 22 7 4.2987 -8.4198 5.0964 23 6 5.2586 -7.7005 4.4899 24 8 6.3595 -7.4835 4.9503 25 6 4.7667 -7.2020 3.1483 26 6 1.8218 -3.6491 -0.0927 27 1 -0.4849 0.8401 0.0004 28 1 -0.1454 -1.4164 1.5767 29 1 -1.2732 -3.5028 2.2148 30 1 -0.4423 -5.6641 1.3827 31 1 3.7944 -7.0176 0.5497 32 1 1.5119 -7.8333 2.1178 33 1 2.2556 -6.3337 2.7234 34 1 2.3340 -7.7902 4.6571 35 1 2.6872 -9.5005 4.2689 36 1 4.3968 -8.8419 5.9642 37 1 5.5272 -7.3532 2.3822 38 1 4.4907 -6.1494 3.2105 39 1 2.6868 -3.6941 -0.7377 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463878924.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:57 Heat of formation + Delta-G solvation = -126.220920 kcal Electronic energy + Delta-G solvation = -24865.107374 eV Core-core repulsion = 21090.607545 eV Total energy + Delta-G solvation = -3774.499829 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.27521 -39.40599 -38.28371 -37.98172 -36.84186 -35.91083 -35.63556 -32.03199 -31.87972 -31.54215 -28.98591 -27.32265 -25.92058 -23.62838 -22.77301 -21.85955 -21.57191 -20.47714 -19.54965 -18.48095 -18.27031 -17.80594 -17.66471 -16.90385 -16.58822 -16.48529 -15.97958 -15.71217 -15.31980 -15.16379 -15.01481 -14.58095 -14.28520 -14.23182 -13.75891 -13.70368 -13.57457 -13.21953 -13.11304 -13.03313 -12.99460 -12.82828 -12.59351 -12.55537 -12.19626 -12.18439 -11.97382 -11.53819 -11.33632 -11.12341 -10.94209 -10.37261 -10.05941 -9.80545 -9.51974 -8.72000 -6.43230 -0.43337 0.45399 0.87914 1.37517 1.44680 1.52133 1.56473 2.16050 2.19924 2.50250 2.58435 2.85737 3.34235 3.47483 3.55403 3.57312 3.83301 4.08260 4.33514 4.36123 4.50791 4.65543 4.68809 4.70330 4.82831 4.87865 4.89403 4.94262 5.05017 5.11175 5.23207 5.28577 5.45016 5.60606 5.88310 5.92735 5.97127 6.02857 6.13904 6.18592 6.55699 6.82307 6.87772 7.25922 8.26085 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.003648 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.754422 B = 7673.352983 C = 8776.827094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 0.980 3.020 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.501 4.501 8 H 0.079 0.921 9 C 0.061 3.939 10 C -0.141 4.141 11 C -0.124 4.124 12 C -0.142 4.142 13 C -0.639 4.639 14 S 2.724 3.276 15 O -1.000 7.000 16 O -0.983 6.983 17 N -1.104 6.104 18 C 0.118 3.882 19 C -0.095 4.095 20 H 0.120 0.880 21 C 0.104 3.896 22 N -0.721 5.721 23 C 0.511 3.489 24 O -0.594 6.594 25 C -0.159 4.159 26 C -0.146 4.146 27 H 0.291 0.709 28 H 0.109 0.891 29 H 0.127 0.873 30 H 0.140 0.860 31 H 0.427 0.573 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.417 0.583 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.265 -14.062 8.424 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.530 4.530 8 H 0.097 0.903 9 C 0.058 3.942 10 C -0.161 4.161 11 C -0.143 4.143 12 C -0.163 4.163 13 C -0.727 4.727 14 S 2.816 3.184 15 O -0.990 6.990 16 O -0.972 6.972 17 N -0.867 5.867 18 C -0.008 4.008 19 C -0.116 4.116 20 H 0.138 0.862 21 C -0.020 4.020 22 N -0.375 5.375 23 C 0.299 3.701 24 O -0.475 6.475 25 C -0.199 4.199 26 C -0.167 4.167 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.264 0.736 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.257 0.743 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.129 -14.171 7.819 16.325 hybrid contribution 0.634 1.617 0.502 1.808 sum 2.763 -12.554 8.321 15.313 Atomic orbital electron populations 1.69822 1.08935 1.30879 1.35469 1.26716 0.95490 1.04466 0.91099 0.85223 0.79213 0.75962 0.79500 1.18908 1.18865 1.18205 1.19866 0.98605 0.92402 1.42156 0.90335 1.18031 0.92731 0.92982 0.90467 1.21634 0.98268 0.97731 0.98443 1.21162 0.99763 0.92726 1.00616 1.20529 0.96664 0.98240 1.00835 1.30304 1.08793 1.19106 1.14475 1.00662 0.72623 0.72924 0.72190 1.93509 1.73296 1.86351 1.45839 1.93499 1.53619 1.63369 1.86762 1.55152 1.24112 1.82293 1.25141 1.21540 0.98382 1.00171 0.80689 1.22327 0.93400 0.99099 0.96748 0.86188 1.22321 0.86344 1.05080 0.88280 1.46258 1.15144 1.53267 1.22847 1.21365 0.83444 0.77111 0.88181 1.90733 1.23489 1.61239 1.72022 1.22564 0.99907 1.02401 0.95069 1.20828 1.01762 0.92269 1.01845 0.89844 0.87287 0.85518 0.84256 0.73630 0.87956 0.90624 0.88983 0.86544 0.74301 0.87079 0.87334 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.59 10.97 21.83 0.24 -41.35 16 2 C 0.04 1.83 5.14 85.26 0.44 2.27 16 3 Si 0.98 37.08 29.60 68.60 2.03 39.11 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 7 C -0.50 -26.20 9.05 23.46 0.21 -25.98 16 8 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 9 C 0.06 3.15 5.57 -21.29 -0.12 3.03 16 10 C -0.14 -6.89 8.70 22.73 0.20 -6.70 16 11 C -0.12 -5.11 10.02 22.22 0.22 -4.89 16 12 C -0.14 -5.39 9.53 22.46 0.21 -5.18 16 13 C -0.64 -25.24 5.94 22.22 0.13 -25.11 16 14 S 2.72 86.80 5.74 -56.49 -0.32 86.47 16 15 O -1.00 -38.63 17.27 -128.00 -2.21 -40.84 16 16 O -0.98 -33.47 16.73 -128.00 -2.14 -35.61 16 17 N -1.10 -22.63 5.93 -187.48 -1.11 -23.74 16 18 C 0.12 1.77 5.51 86.38 0.48 2.24 16 19 C -0.10 -0.99 3.24 -9.74 -0.03 -1.02 16 20 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 21 C 0.10 0.77 7.35 86.83 0.64 1.41 16 22 N -0.72 -9.25 6.24 -459.72 -2.87 -12.11 16 23 C 0.51 10.69 8.43 87.92 0.74 11.43 16 24 O -0.59 -18.64 18.03 -3.06 -0.06 -18.70 16 25 C -0.16 -2.49 6.09 30.60 0.19 -2.30 16 26 C -0.15 -6.83 9.26 22.73 0.21 -6.62 16 27 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 28 H 0.11 5.55 6.18 -2.91 -0.02 5.54 16 29 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 30 H 0.14 4.34 7.59 -2.91 -0.02 4.32 16 31 H 0.43 6.98 8.42 -96.74 -0.81 6.17 16 32 H 0.10 1.32 7.75 -2.39 -0.02 1.30 16 33 H 0.08 1.19 8.01 -2.38 -0.02 1.17 16 34 H 0.09 0.56 7.89 -2.38 -0.02 0.54 16 35 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.42 4.21 8.96 -92.71 -0.83 3.38 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 1.85 7.81 -2.39 -0.02 1.83 16 39 H 0.11 4.96 7.60 -2.91 -0.02 4.94 16 Total: -1.00 -74.79 344.55 -3.46 -78.25 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.54 Total: 25.92 kcal Atomic # 6 Polarization: -60.93 SS G_CDS: 3.52 Total: -57.41 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -3.74 Total: -77.20 kcal Atomic # 8 Polarization: -90.74 SS G_CDS: -4.41 Total: -95.14 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 16 Polarization: 86.80 SS G_CDS: -0.32 Total: 86.47 kcal Total: -74.79 -3.46 -78.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463878924.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.969 kcal (2) G-P(sol) polarization free energy of solvation -74.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds