Wall clock time and date at job start Tue Mar 31 2020 14:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99859 * 2 1 4 4 H 1.48503 * 109.46792 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47375 * 299.99709 * 3 2 1 6 6 H 1.48495 * 109.47022 * 60.00347 * 3 2 1 7 7 C 1.39926 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00279 * 168.95626 * 7 2 1 9 9 C 1.41411 * 119.99762 * 348.94969 * 7 2 1 10 10 C 1.40782 * 120.21236 * 331.80722 * 9 7 2 11 11 C 1.37638 * 119.89122 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.32630 * 359.72364 * 11 10 9 13 13 C 1.39271 * 120.42460 * 0.55535 * 12 11 10 14 14 N 1.39844 * 119.94858 * 179.72093 * 13 12 11 15 15 C 1.34777 * 120.00258 * 145.96694 * 14 13 12 16 16 O 1.21505 * 119.99528 * 354.64877 * 15 14 13 17 17 C 1.48299 * 120.00510 * 174.93266 * 15 14 13 18 18 C 1.41737 * 126.81796 * 179.97438 * 17 15 14 19 19 C 1.37147 * 103.80078 * 179.97438 * 18 17 15 20 20 C 1.47006 * 126.86079 * 179.97438 * 19 18 17 21 21 C 1.36340 * 125.96764 * 179.97438 * 20 19 18 22 22 C 1.40692 * 106.72123 * 180.02562 * 21 20 19 23 23 C 1.34889 * 107.08362 * 0.02562 * 22 21 20 24 24 O 1.34234 * 108.73148 * 359.73533 * 23 22 21 25 25 O 1.34587 * 106.28149 * 0.02562 * 19 18 17 26 26 N 1.20873 * 111.70068 * 359.71164 * 25 19 18 27 27 C 1.38308 * 120.09814 * 359.44957 * 13 12 11 28 28 H 0.97005 * 119.99879 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.04934 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.83591 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.78946 * 180.27145 * 12 11 10 32 32 H 0.96998 * 120.00432 * 325.95438 * 14 13 12 33 33 H 1.08000 * 128.09702 * 359.97438 * 18 17 15 34 34 H 1.08003 * 126.63929 * 359.97438 * 21 20 19 35 35 H 1.08004 * 126.46045 * 179.97438 * 22 21 20 36 36 H 1.07997 * 125.63981 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.15807 * 180.25071 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0729 -1.2204 -0.1797 9 6 1.3205 -2.4252 0.2337 10 6 0.1515 -2.4371 1.0181 11 6 -0.5120 -3.6220 1.2423 12 6 -0.0386 -4.8032 0.6949 13 6 1.1197 -4.8077 -0.0784 14 7 1.5919 -6.0068 -0.6214 15 6 2.2017 -6.0084 -1.8233 16 8 2.2551 -4.9867 -2.4787 17 6 2.8020 -7.2586 -2.3487 18 6 3.4730 -7.4239 -3.5861 19 6 3.8299 -8.7482 -3.5904 20 6 4.5570 -9.4621 -4.6500 21 6 4.9032 -10.7807 -4.6349 22 6 5.5818 -11.0349 -5.8409 23 6 5.6184 -9.8742 -6.5272 24 8 4.9942 -8.9283 -5.8079 25 8 3.3803 -9.2638 -2.4314 26 7 2.8220 -8.4298 -1.7579 27 6 1.8004 -3.6272 -0.3149 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2239 -1.5180 1.4433 30 1 -1.4089 -3.6300 1.8438 31 1 -0.5686 -5.7273 0.8727 32 1 1.4808 -6.8374 -0.1329 33 1 3.6596 -6.6810 -4.3475 34 1 4.6971 -11.4923 -3.8489 35 1 5.9961 -11.9809 -6.1572 36 1 6.0707 -9.7308 -7.4973 37 1 2.6965 -3.6290 -0.9178 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468127840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:14 Heat of formation + Delta-G solvation = 75.401400 kcal Electronic energy + Delta-G solvation = -24931.605577 eV Core-core repulsion = 21030.404796 eV Total energy + Delta-G solvation = -3901.200780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.28573 -42.97669 -39.74349 -37.24614 -34.59818 -34.27801 -33.75993 -33.19074 -32.75704 -29.84858 -29.17662 -28.38657 -25.37379 -24.91835 -23.69669 -22.57209 -21.78642 -21.21731 -20.77629 -19.68446 -18.88189 -18.11595 -17.73937 -16.96190 -16.73949 -16.43513 -15.64490 -15.18585 -15.14223 -14.73402 -14.48224 -14.29547 -13.92071 -13.38913 -13.21712 -13.10821 -12.93099 -12.80392 -12.21006 -11.94903 -11.76184 -11.35528 -11.14049 -10.89504 -10.76108 -10.60745 -10.50418 -10.32705 -10.31266 -9.80779 -9.70727 -9.24585 -8.97094 -8.57649 -7.45470 -6.96633 -6.68102 -4.36346 0.30432 1.15688 1.66447 1.76698 2.33931 2.69879 2.84140 3.10369 3.12404 3.16819 3.18582 3.31339 3.49553 3.78947 3.97674 4.13576 4.46824 4.51363 4.65207 4.67103 4.92738 5.09657 5.34027 5.38155 5.50318 5.62132 5.68188 5.93932 6.20758 6.35087 6.51641 6.61822 6.91833 6.99034 7.04575 7.24675 7.44804 7.65394 7.70155 7.91378 8.05278 8.08482 8.19005 8.48658 8.66000 8.92324 8.95269 10.25730 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.002428 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.858461 B =11530.773728 C =12682.195310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.456 4.456 8 H 0.077 0.923 9 C 0.118 3.882 10 C -0.163 4.163 11 C -0.094 4.094 12 C -0.253 4.253 13 C 0.145 3.855 14 N -0.648 5.648 15 C 0.585 3.415 16 O -0.491 6.491 17 C -0.008 4.008 18 C -0.147 4.147 19 C 0.030 3.970 20 C 0.045 3.955 21 C -0.159 4.159 22 C -0.215 4.215 23 C -0.015 4.015 24 O -0.157 6.157 25 O 0.142 5.858 26 N -0.324 5.324 27 C -0.207 4.207 28 H 0.279 0.721 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.405 0.595 33 H 0.189 0.811 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.213 0.787 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.728 -19.061 -9.211 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.486 4.486 8 H 0.096 0.904 9 C 0.115 3.885 10 C -0.183 4.183 11 C -0.113 4.113 12 C -0.275 4.275 13 C 0.054 3.946 14 N -0.292 5.292 15 C 0.368 3.632 16 O -0.362 6.362 17 C -0.166 4.166 18 C -0.169 4.169 19 C -0.033 4.033 20 C -0.005 4.005 21 C -0.179 4.179 22 C -0.234 4.234 23 C -0.083 4.083 24 O -0.053 6.053 25 O 0.063 5.937 26 N -0.023 5.023 27 C -0.228 4.228 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.240 0.760 33 H 0.206 0.794 34 H 0.178 0.822 35 H 0.175 0.825 36 H 0.229 0.771 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.038 -18.197 -8.579 21.664 hybrid contribution 0.471 0.459 -0.555 0.860 sum 8.509 -17.738 -9.135 21.691 Atomic orbital electron populations 1.69806 1.07431 1.28906 1.36480 1.25894 0.94850 1.01260 0.92388 0.86200 0.80830 0.80852 0.78463 1.18466 1.19973 1.19794 1.19578 0.96041 0.90332 1.42658 0.90438 1.17512 0.91468 0.91645 0.87899 1.21444 0.98749 0.96682 1.01425 1.20493 0.98457 0.92749 0.99579 1.20073 0.98669 0.97667 1.11041 1.17422 0.94855 0.84168 0.98187 1.43246 1.56744 1.10750 1.18477 1.16837 0.79387 0.85229 0.81753 1.90895 1.56808 1.31331 1.57197 1.23533 1.03981 0.94057 0.95054 1.22778 1.00165 0.95491 0.98489 1.20432 1.02482 0.91573 0.88845 1.18040 1.04766 0.91103 0.86627 1.21996 1.01474 0.94482 0.99930 1.21824 1.05782 0.99997 0.95770 1.24371 0.99265 0.86556 0.98139 1.84085 1.57253 1.38590 1.25334 1.84917 1.52621 1.33564 1.22589 1.74178 1.12172 0.99733 1.16217 1.20998 1.03155 0.91818 1.06863 0.91015 0.85902 0.88788 0.89071 0.76041 0.79371 0.82184 0.82510 0.77057 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.18 10.81 55.55 0.60 -20.58 16 2 C 0.07 1.88 5.25 -17.35 -0.09 1.78 16 3 Si 0.91 19.26 29.57 -169.99 -5.03 14.23 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.46 -12.54 9.06 -37.74 -0.34 -12.88 16 8 H 0.08 2.07 7.87 -52.49 -0.41 1.66 16 9 C 0.12 3.25 5.55 -106.85 -0.59 2.66 16 10 C -0.16 -4.30 8.66 -38.84 -0.34 -4.63 16 11 C -0.09 -2.20 10.01 -39.69 -0.40 -2.60 16 12 C -0.25 -5.67 9.97 -39.09 -0.39 -6.06 16 13 C 0.14 3.36 6.26 -83.79 -0.52 2.84 16 14 N -0.65 -12.53 5.33 -10.64 -0.06 -12.59 16 15 C 0.58 11.39 7.57 -12.12 -0.09 11.29 16 16 O -0.49 -11.34 14.66 5.36 0.08 -11.27 16 17 C -0.01 -0.13 7.17 -82.67 -0.59 -0.72 16 18 C -0.15 -1.97 10.96 -38.64 -0.42 -2.39 16 19 C 0.03 0.35 7.30 -36.43 -0.27 0.08 16 20 C 0.05 0.45 7.17 -36.71 -0.26 0.19 16 21 C -0.16 -1.24 10.86 -39.34 -0.43 -1.67 16 22 C -0.21 -1.30 10.88 -39.84 -0.43 -1.74 16 23 C -0.01 -0.09 12.08 29.54 0.36 0.27 16 24 O -0.16 -1.47 10.67 4.54 0.05 -1.43 16 25 O 0.14 1.70 11.21 15.71 0.18 1.88 16 26 N -0.32 -4.55 11.82 33.35 0.39 -4.16 16 27 C -0.21 -5.42 8.39 -38.67 -0.32 -5.74 16 28 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 29 H 0.12 3.31 6.18 -52.48 -0.32 2.98 16 30 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 32 H 0.40 6.55 8.58 -40.82 -0.35 6.20 16 33 H 0.19 2.31 8.06 -52.49 -0.42 1.88 16 34 H 0.16 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.16 0.55 8.06 -52.48 -0.42 0.13 16 36 H 0.21 0.41 8.06 -52.49 -0.42 -0.01 16 37 H 0.11 2.86 6.44 -52.48 -0.34 2.52 16 LS Contribution 338.26 15.07 5.10 5.10 Total: -1.00 -31.66 338.26 -6.93 -38.59 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.10 Total: 9.54 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -5.14 Total: -19.32 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.94 Total: -37.33 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.30 Total: -10.81 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.66 -6.93 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468127840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.989 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds