Wall clock time and date at job start Tue Mar 31 2020 14:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99859 * 2 1 4 4 H 1.48503 * 109.46792 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47375 * 299.99709 * 3 2 1 6 6 H 1.48495 * 109.47022 * 60.00347 * 3 2 1 7 7 C 1.39926 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00279 * 168.95626 * 7 2 1 9 9 C 1.41411 * 119.99762 * 348.94969 * 7 2 1 10 10 C 1.40782 * 120.21236 * 331.80722 * 9 7 2 11 11 C 1.37638 * 119.89122 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.32630 * 359.72364 * 11 10 9 13 13 C 1.39271 * 120.42460 * 0.55535 * 12 11 10 14 14 N 1.39844 * 119.94858 * 179.72093 * 13 12 11 15 15 C 1.34777 * 120.00258 * 145.96694 * 14 13 12 16 16 O 1.21505 * 119.99528 * 354.64877 * 15 14 13 17 17 C 1.48299 * 120.00510 * 174.93266 * 15 14 13 18 18 C 1.41737 * 126.81796 * 179.97438 * 17 15 14 19 19 C 1.37147 * 103.80078 * 179.97438 * 18 17 15 20 20 C 1.47006 * 126.86079 * 179.97438 * 19 18 17 21 21 C 1.36340 * 125.96764 * 179.97438 * 20 19 18 22 22 C 1.40692 * 106.72123 * 180.02562 * 21 20 19 23 23 C 1.34889 * 107.08362 * 0.02562 * 22 21 20 24 24 O 1.34234 * 108.73148 * 359.73533 * 23 22 21 25 25 O 1.34587 * 106.28149 * 0.02562 * 19 18 17 26 26 N 1.20873 * 111.70068 * 359.71164 * 25 19 18 27 27 C 1.38308 * 120.09814 * 359.44957 * 13 12 11 28 28 H 0.97005 * 119.99879 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.04934 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.83591 * 180.02562 * 11 10 9 31 31 H 1.08005 * 119.78946 * 180.27145 * 12 11 10 32 32 H 0.96998 * 120.00432 * 325.95438 * 14 13 12 33 33 H 1.08000 * 128.09702 * 359.97438 * 18 17 15 34 34 H 1.08003 * 126.63929 * 359.97438 * 21 20 19 35 35 H 1.08004 * 126.46045 * 179.97438 * 22 21 20 36 36 H 1.07997 * 125.63981 * 180.02562 * 23 22 21 37 37 H 1.08003 * 120.15807 * 180.25071 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3464 0.0006 5 1 1.8836 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2118 -0.0005 8 1 3.0729 -1.2204 -0.1797 9 6 1.3205 -2.4252 0.2337 10 6 0.1515 -2.4371 1.0181 11 6 -0.5120 -3.6220 1.2423 12 6 -0.0386 -4.8032 0.6949 13 6 1.1197 -4.8077 -0.0784 14 7 1.5919 -6.0068 -0.6214 15 6 2.2017 -6.0084 -1.8233 16 8 2.2551 -4.9867 -2.4787 17 6 2.8020 -7.2586 -2.3487 18 6 3.4730 -7.4239 -3.5861 19 6 3.8299 -8.7482 -3.5904 20 6 4.5570 -9.4621 -4.6500 21 6 4.9032 -10.7807 -4.6349 22 6 5.5818 -11.0349 -5.8409 23 6 5.6184 -9.8742 -6.5272 24 8 4.9942 -8.9283 -5.8079 25 8 3.3803 -9.2638 -2.4314 26 7 2.8220 -8.4298 -1.7579 27 6 1.8004 -3.6272 -0.3149 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2239 -1.5180 1.4433 30 1 -1.4089 -3.6300 1.8438 31 1 -0.5686 -5.7273 0.8727 32 1 1.4808 -6.8374 -0.1329 33 1 3.6596 -6.6810 -4.3475 34 1 4.6971 -11.4923 -3.8489 35 1 5.9961 -11.9809 -6.1572 36 1 6.0707 -9.7308 -7.4973 37 1 2.6965 -3.6290 -0.9178 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468127840.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:13 Heat of formation + Delta-G solvation = 56.160883 kcal Electronic energy + Delta-G solvation = -24932.439908 eV Core-core repulsion = 21030.404796 eV Total energy + Delta-G solvation = -3902.035112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.37235 -43.56040 -41.41338 -39.10397 -36.39611 -35.45850 -34.92759 -34.45493 -33.68633 -31.81217 -30.26337 -29.82462 -27.33521 -26.30743 -24.61679 -23.70242 -22.93780 -22.46604 -22.35080 -20.99727 -19.99340 -19.48557 -19.18195 -18.17079 -17.77559 -17.37769 -17.07693 -16.96205 -16.53620 -16.22354 -16.11575 -15.57669 -15.12012 -14.99490 -14.69351 -14.06215 -13.88963 -13.72815 -13.68775 -13.50180 -13.19156 -13.04219 -12.87474 -12.65120 -12.24782 -12.15900 -11.83274 -11.74534 -11.66009 -11.52101 -11.13110 -10.89091 -10.83991 -9.43185 -9.26201 -8.85432 -8.61825 -6.42258 -0.56216 -0.06638 0.86467 0.88932 0.95380 1.13323 1.36045 1.46691 1.51669 1.67854 1.71962 1.91857 2.20755 2.58190 2.58904 2.71623 3.15372 3.57232 3.66712 3.86439 3.91408 3.99808 4.20280 4.40381 4.53983 4.57840 4.75360 4.85710 4.94917 5.00073 5.03879 5.04945 5.09909 5.28037 5.47684 5.62419 5.74610 5.95795 6.00552 6.04880 6.25365 6.29972 6.62195 6.67191 6.85020 6.93209 6.98229 8.34582 Molecular weight = 324.09amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.002428 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.858461 B =11530.773728 C =12682.195310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.032 3.968 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.498 4.498 8 H 0.067 0.933 9 C 0.087 3.913 10 C -0.187 4.187 11 C -0.090 4.090 12 C -0.243 4.243 13 C 0.149 3.851 14 N -0.641 5.641 15 C 0.587 3.413 16 O -0.535 6.535 17 C -0.026 4.026 18 C -0.168 4.168 19 C 0.058 3.942 20 C 0.000 4.000 21 C -0.141 4.141 22 C -0.223 4.223 23 C -0.001 4.001 24 O -0.178 6.178 25 O 0.162 5.838 26 N -0.326 5.326 27 C -0.232 4.232 28 H 0.289 0.711 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.422 0.578 33 H 0.191 0.809 34 H 0.177 0.823 35 H 0.186 0.814 36 H 0.251 0.749 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.323 -21.550 -10.045 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.528 4.528 8 H 0.085 0.915 9 C 0.085 3.915 10 C -0.206 4.206 11 C -0.109 4.109 12 C -0.264 4.264 13 C 0.057 3.943 14 N -0.286 5.286 15 C 0.373 3.627 16 O -0.409 6.409 17 C -0.183 4.183 18 C -0.190 4.190 19 C -0.005 4.005 20 C -0.050 4.050 21 C -0.161 4.161 22 C -0.241 4.241 23 C -0.069 4.069 24 O -0.074 6.074 25 O 0.080 5.920 26 N -0.022 5.022 27 C -0.254 4.254 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.260 0.740 33 H 0.208 0.792 34 H 0.195 0.805 35 H 0.204 0.796 36 H 0.267 0.733 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.609 -20.728 -9.375 24.324 hybrid contribution 0.357 0.906 -0.440 1.068 sum 8.967 -19.822 -9.815 23.867 Atomic orbital electron populations 1.69848 1.08731 1.30400 1.36626 1.26758 0.95745 1.04424 0.91280 0.85089 0.79034 0.75947 0.79163 1.18615 1.19065 1.18153 1.19777 0.95897 0.91846 1.45236 0.91491 1.17861 0.92559 0.92338 0.88777 1.21424 0.99218 0.97526 1.02473 1.20867 0.98980 0.91985 0.99089 1.20496 0.97819 0.98932 1.09191 1.17506 0.94658 0.84623 0.97532 1.43129 1.56564 1.10233 1.18664 1.17241 0.78324 0.85962 0.81192 1.90869 1.58267 1.33442 1.58368 1.22963 1.05794 0.93172 0.96327 1.22797 1.01411 0.96664 0.98164 1.20584 1.00658 0.90771 0.88469 1.17993 1.07787 0.91935 0.87309 1.22412 0.99362 0.93630 1.00686 1.22230 1.05659 1.01296 0.94957 1.25327 0.96903 0.85927 0.98706 1.84085 1.57913 1.39956 1.25482 1.84883 1.51795 1.32711 1.22648 1.74148 1.12434 0.99199 1.16437 1.20959 1.03492 0.93092 1.07866 0.90079 0.87163 0.85422 0.85066 0.74021 0.79180 0.80519 0.79630 0.73265 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.21 10.81 21.82 0.24 -44.97 16 2 C 0.03 1.69 5.25 85.25 0.45 2.13 16 3 Si 0.99 40.47 29.57 68.60 2.03 42.50 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.50 -28.98 9.06 23.46 0.21 -28.77 16 8 H 0.07 3.86 7.87 -2.91 -0.02 3.83 16 9 C 0.09 5.09 5.55 -21.31 -0.12 4.97 16 10 C -0.19 -10.11 8.66 22.75 0.20 -9.92 16 11 C -0.09 -4.18 10.01 22.20 0.22 -3.96 16 12 C -0.24 -10.57 9.97 22.59 0.23 -10.35 16 13 C 0.15 7.02 6.26 38.13 0.24 7.26 16 14 N -0.64 -24.93 5.33 -305.86 -1.63 -26.56 16 15 C 0.59 23.68 7.57 86.92 0.66 24.33 16 16 O -0.53 -26.19 14.66 -3.73 -0.05 -26.25 16 17 C -0.03 -0.83 7.17 42.78 0.31 -0.53 16 18 C -0.17 -4.59 10.96 22.88 0.25 -4.34 16 19 C 0.06 1.31 7.30 24.31 0.18 1.49 16 20 C 0.00 -0.01 7.17 24.13 0.17 0.17 16 21 C -0.14 -1.80 10.86 22.43 0.24 -1.56 16 22 C -0.22 -1.87 10.88 22.10 0.24 -1.63 16 23 C 0.00 -0.01 12.08 67.05 0.81 0.80 16 24 O -0.18 -3.04 10.67 -6.68 -0.07 -3.11 16 25 O 0.16 3.68 11.21 66.39 0.74 4.43 16 26 N -0.33 -8.95 11.82 -48.87 -0.58 -9.52 16 27 C -0.23 -12.83 8.39 22.86 0.19 -12.63 16 28 H 0.29 14.08 8.30 -92.70 -0.77 13.31 16 29 H 0.11 6.17 6.18 -2.91 -0.02 6.15 16 30 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 31 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 32 H 0.42 13.28 8.58 -92.71 -0.80 12.48 16 33 H 0.19 4.95 8.06 -2.91 -0.02 4.93 16 34 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.19 0.43 8.06 -2.91 -0.02 0.41 16 36 H 0.25 -0.11 8.06 -2.91 -0.02 -0.14 16 37 H 0.09 5.06 6.44 -2.91 -0.02 5.04 16 Total: -1.00 -73.27 338.26 5.51 -67.76 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.36 Total: 28.24 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.48 Total: -32.51 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -1.97 Total: -81.05 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: 0.62 Total: -24.94 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -73.27 5.51 -67.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468127840.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.925 kcal (2) G-P(sol) polarization free energy of solvation -73.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds