Wall clock time and date at job start Tue Mar 31 2020 14:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00323 * 2 1 4 4 H 1.48504 * 109.47049 * 240.00296 * 3 2 1 5 5 H 1.48503 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47028 * 120.00238 * 3 2 1 7 7 C 1.39944 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99922 * 191.67410 * 7 2 1 9 9 C 1.41395 * 120.00179 * 11.67613 * 7 2 1 10 10 C 1.40739 * 120.24646 * 30.87591 * 9 7 2 11 11 C 1.37599 * 119.74768 * 180.27563 * 10 9 7 12 12 C 1.38657 * 120.24733 * 359.97438 * 11 10 9 13 13 C 1.38621 * 120.50237 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24530 * 359.97438 * 13 12 11 15 15 S 1.76199 * 120.12419 * 179.97438 * 14 13 12 16 16 O 1.42105 * 106.40376 * 358.00142 * 15 14 13 17 17 O 1.42103 * 106.40084 * 130.91855 * 15 14 13 18 18 N 1.65600 * 107.22036 * 244.45676 * 15 14 13 19 19 C 1.47431 * 125.64452 * 82.15545 * 18 15 14 20 20 C 1.54907 * 104.82958 * 204.09309 * 19 18 15 21 21 C 1.55154 * 101.58271 * 322.98692 * 20 19 18 22 22 C 1.47016 * 125.65376 * 261.84568 * 18 15 14 23 23 H 1.08995 * 109.87911 * 59.55735 * 22 18 15 24 24 C 1.50703 * 109.87971 * 298.39672 * 22 18 15 25 25 N 1.34776 * 119.99883 * 179.97438 * 24 22 18 26 26 O 1.21279 * 120.00064 * 359.97438 * 24 22 18 27 27 H 0.97001 * 119.99789 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.12446 * 0.25362 * 10 9 7 29 29 H 1.07995 * 119.87323 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.74959 * 180.02562 * 12 11 10 31 31 H 1.07991 * 119.87504 * 179.97438 * 13 12 11 32 32 H 1.09001 * 110.36517 * 322.92645 * 19 18 15 33 33 H 1.09001 * 110.36781 * 85.25136 * 19 18 15 34 34 H 1.08999 * 111.00901 * 81.06542 * 20 19 18 35 35 H 1.08999 * 111.00361 * 204.91115 * 20 19 18 36 36 H 1.09005 * 110.72027 * 153.86659 * 21 20 19 37 37 H 1.08997 * 110.72249 * 276.96341 * 21 20 19 38 38 H 0.97000 * 120.00141 * 359.97438 * 25 24 22 39 39 H 0.96999 * 120.00301 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6962 1.2124 7 6 2.0078 -1.2120 -0.0005 8 1 3.0711 -1.2218 0.1887 9 6 1.3228 -2.4237 -0.2489 10 6 0.1943 -2.4406 -1.0898 11 6 -0.4680 -3.6245 -1.3198 12 6 -0.0272 -4.7981 -0.7273 13 6 1.0830 -4.7933 0.1027 14 6 1.7610 -3.6206 0.3470 15 16 3.1714 -3.6180 1.4030 16 8 3.3216 -4.9499 1.8752 17 8 4.1942 -2.9211 0.7048 18 7 2.7933 -2.6934 2.7238 19 6 2.0342 -3.1490 3.9026 20 6 1.4295 -1.8577 4.5081 21 6 2.5741 -0.8373 4.2720 22 6 3.1645 -1.2842 2.9179 23 1 2.7469 -0.6769 2.1150 24 6 4.6652 -1.1479 2.9400 25 7 5.2293 0.0647 3.1070 26 8 5.3653 -2.1293 2.8074 27 1 -0.4850 0.8401 0.0004 28 1 -0.1506 -1.5277 -1.5524 29 1 -1.3339 -3.6399 -1.9651 30 1 -0.5529 -5.7228 -0.9137 31 1 1.4173 -5.7130 0.5593 32 1 1.2416 -3.8341 3.6018 33 1 2.6996 -3.6290 4.6202 34 1 0.5261 -1.5619 3.9747 35 1 1.2298 -1.9816 5.5725 36 1 2.1796 0.1768 4.2075 37 1 3.3232 -0.9087 5.0606 38 1 4.6694 0.8497 3.2127 39 1 6.1952 0.1524 3.1216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475497950.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:22 Heat of formation + Delta-G solvation = -90.550815 kcal Electronic energy + Delta-G solvation = -27406.110483 eV Core-core repulsion = 23633.157426 eV Total energy + Delta-G solvation = -3772.953057 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.61441 -37.62967 -37.04718 -36.11100 -34.67561 -33.95001 -33.38690 -30.51702 -30.17383 -29.58584 -29.06002 -25.57948 -23.17041 -21.70059 -21.26001 -21.11578 -20.26770 -18.33771 -17.79098 -17.17577 -16.81995 -16.53479 -15.87875 -15.40890 -15.11525 -14.48082 -14.38631 -14.22503 -13.51751 -13.44114 -13.24435 -13.08291 -12.87402 -12.75520 -12.29654 -11.98665 -11.64120 -11.46105 -11.33122 -11.21689 -11.07660 -11.00749 -10.96775 -10.84756 -10.65761 -10.58724 -10.40991 -9.91434 -9.66288 -9.51181 -9.35560 -9.16445 -8.34589 -8.03569 -7.61692 -7.11266 -4.83366 1.52985 2.32378 2.64875 2.85213 2.88077 3.01305 3.06395 3.65101 3.72473 4.03769 4.32209 4.69166 4.80994 4.94509 5.11593 5.30351 5.39045 5.53871 5.65338 5.81392 5.85022 5.99176 6.02686 6.03604 6.20657 6.22961 6.36351 6.44298 6.58001 6.73487 6.84137 6.97388 7.06947 7.14907 7.30859 7.48630 7.61550 7.65562 7.77048 7.89999 8.29201 8.45462 8.61329 8.63085 9.83252 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.009012 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.201612 B = 3106.081057 C = 4393.535934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.080 3.920 3 Si 0.903 3.097 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.482 4.482 8 H 0.111 0.889 9 C 0.197 3.803 10 C -0.156 4.156 11 C -0.076 4.076 12 C -0.245 4.245 13 C -0.006 4.006 14 C -0.777 4.777 15 S 2.726 3.274 16 O -0.992 6.992 17 O -0.955 6.955 18 N -0.982 5.982 19 C 0.124 3.876 20 C -0.126 4.126 21 C -0.119 4.119 22 C 0.127 3.873 23 H 0.127 0.873 24 C 0.507 3.493 25 N -0.859 5.859 26 O -0.524 6.524 27 H 0.287 0.713 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.398 0.602 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 5.610 8.092 9.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.511 4.511 8 H 0.128 0.872 9 C 0.193 3.807 10 C -0.176 4.176 11 C -0.095 4.095 12 C -0.265 4.265 13 C -0.025 4.025 14 C -0.871 4.871 15 S 2.825 3.175 16 O -0.983 6.983 17 O -0.946 6.946 18 N -0.816 5.816 19 C -0.001 4.001 20 C -0.165 4.165 21 C -0.158 4.158 22 C 0.017 3.983 23 H 0.144 0.856 24 C 0.290 3.710 25 N -0.424 5.424 26 O -0.399 6.399 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.226 0.774 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.874 4.508 7.811 9.060 hybrid contribution -0.445 1.411 -0.371 1.525 sum 0.429 5.919 7.440 9.516 Atomic orbital electron populations 1.69785 1.07562 1.30070 1.32754 1.25970 0.94826 1.01402 0.91906 0.86439 0.80267 0.79612 0.81069 1.18121 1.19860 1.18136 1.20345 0.97954 0.90581 1.42200 0.87173 1.16986 0.89297 0.89661 0.84792 1.21463 0.98704 0.96674 1.00762 1.20915 0.97562 0.93528 0.97503 1.20527 1.01347 0.97181 1.07441 1.20285 0.92876 0.95242 0.94141 1.30181 1.28779 1.01258 1.26873 1.00526 0.73866 0.71386 0.71743 1.93425 1.86883 1.36613 1.81365 1.93480 1.55407 1.73745 1.71973 1.58403 1.69523 1.20652 1.33021 1.21882 0.94533 0.96589 0.87136 1.22763 0.98338 0.94477 1.00934 1.22593 0.98266 1.00131 0.94820 1.21512 0.90367 0.85301 1.01156 0.85586 1.21194 0.91660 0.83173 0.74925 1.43766 1.11069 1.09414 1.78103 1.90715 1.64200 1.37659 1.47310 0.90179 0.86063 0.88740 0.88592 0.87386 0.90566 0.91845 0.89751 0.90282 0.89676 0.90794 0.77369 0.77162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.37 11.05 55.55 0.61 -16.76 16 2 C 0.08 1.75 4.90 -17.34 -0.08 1.66 16 3 Si 0.90 16.22 29.05 -169.99 -4.94 11.28 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 6 H -0.26 -4.05 7.11 56.52 0.40 -3.65 16 7 C -0.48 -11.68 6.08 -37.74 -0.23 -11.91 16 8 H 0.11 2.75 4.83 -52.49 -0.25 2.50 16 9 C 0.20 4.99 5.52 -106.82 -0.59 4.40 16 10 C -0.16 -3.82 8.64 -38.87 -0.34 -4.16 16 11 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 12 C -0.24 -5.40 10.05 -39.29 -0.39 -5.79 16 13 C -0.01 -0.13 9.54 -39.66 -0.38 -0.51 16 14 C -0.78 -19.22 5.96 -38.87 -0.23 -19.45 16 15 S 2.73 65.97 4.72 -107.50 -0.51 65.46 16 16 O -0.99 -25.19 16.67 -57.17 -0.95 -26.14 16 17 O -0.96 -25.33 13.02 -66.02 -0.86 -26.19 16 18 N -0.98 -19.80 3.03 -105.63 -0.32 -20.12 16 19 C 0.12 2.02 7.06 -2.53 -0.02 2.00 16 20 C -0.13 -1.61 7.09 -24.59 -0.17 -1.79 16 21 C -0.12 -1.51 6.41 -24.89 -0.16 -1.67 16 22 C 0.13 2.25 2.91 -68.10 -0.20 2.06 16 23 H 0.13 2.38 4.56 -51.93 -0.24 2.14 16 24 C 0.51 9.30 6.73 -10.98 -0.07 9.23 16 25 N -0.86 -11.22 8.81 31.22 0.28 -10.94 16 26 O -0.52 -11.93 15.08 -15.84 -0.24 -12.17 16 27 H 0.29 5.78 8.30 -40.82 -0.34 5.45 16 28 H 0.12 2.96 6.44 -52.49 -0.34 2.62 16 29 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.11 2.37 7.33 -52.49 -0.38 1.98 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 38 H 0.40 4.00 8.82 -40.82 -0.36 3.64 16 39 H 0.40 4.51 8.93 -40.82 -0.36 4.15 16 LS Contribution 327.50 15.07 4.94 4.94 Total: -1.00 -32.82 327.50 -9.70 -42.51 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -4.44 Total: 16.15 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -3.27 Total: -28.02 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 0.57 Total: -47.81 kcal Atomic # 8 Polarization: -62.45 SS G_CDS: -2.05 Total: -64.51 kcal Atomic # 14 Polarization: 16.22 SS G_CDS: -4.94 Total: 11.28 kcal Atomic # 16 Polarization: 65.97 SS G_CDS: -0.51 Total: 65.46 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.82 -9.70 -42.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475497950.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.036 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds