Wall clock time and date at job start Tue Mar 31 2020 14:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00323 * 2 1 4 4 H 1.48504 * 109.47049 * 240.00296 * 3 2 1 5 5 H 1.48503 * 109.47010 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47028 * 120.00238 * 3 2 1 7 7 C 1.39944 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99922 * 191.67410 * 7 2 1 9 9 C 1.41395 * 120.00179 * 11.67613 * 7 2 1 10 10 C 1.40739 * 120.24646 * 30.87591 * 9 7 2 11 11 C 1.37599 * 119.74768 * 180.27563 * 10 9 7 12 12 C 1.38657 * 120.24733 * 359.97438 * 11 10 9 13 13 C 1.38621 * 120.50237 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.24530 * 359.97438 * 13 12 11 15 15 S 1.76199 * 120.12419 * 179.97438 * 14 13 12 16 16 O 1.42105 * 106.40376 * 358.00142 * 15 14 13 17 17 O 1.42103 * 106.40084 * 130.91855 * 15 14 13 18 18 N 1.65600 * 107.22036 * 244.45676 * 15 14 13 19 19 C 1.47431 * 125.64452 * 82.15545 * 18 15 14 20 20 C 1.54907 * 104.82958 * 204.09309 * 19 18 15 21 21 C 1.55154 * 101.58271 * 322.98692 * 20 19 18 22 22 C 1.47016 * 125.65376 * 261.84568 * 18 15 14 23 23 H 1.08995 * 109.87911 * 59.55735 * 22 18 15 24 24 C 1.50703 * 109.87971 * 298.39672 * 22 18 15 25 25 N 1.34776 * 119.99883 * 179.97438 * 24 22 18 26 26 O 1.21279 * 120.00064 * 359.97438 * 24 22 18 27 27 H 0.97001 * 119.99789 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.12446 * 0.25362 * 10 9 7 29 29 H 1.07995 * 119.87323 * 180.02562 * 11 10 9 30 30 H 1.07995 * 119.74959 * 180.02562 * 12 11 10 31 31 H 1.07991 * 119.87504 * 179.97438 * 13 12 11 32 32 H 1.09001 * 110.36517 * 322.92645 * 19 18 15 33 33 H 1.09001 * 110.36781 * 85.25136 * 19 18 15 34 34 H 1.08999 * 111.00901 * 81.06542 * 20 19 18 35 35 H 1.08999 * 111.00361 * 204.91115 * 20 19 18 36 36 H 1.09005 * 110.72027 * 153.86659 * 21 20 19 37 37 H 1.08997 * 110.72249 * 276.96341 * 21 20 19 38 38 H 0.97000 * 120.00141 * 359.97438 * 25 24 22 39 39 H 0.96999 * 120.00301 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2126 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6962 1.2124 7 6 2.0078 -1.2120 -0.0005 8 1 3.0711 -1.2218 0.1887 9 6 1.3228 -2.4237 -0.2489 10 6 0.1943 -2.4406 -1.0898 11 6 -0.4680 -3.6245 -1.3198 12 6 -0.0272 -4.7981 -0.7273 13 6 1.0830 -4.7933 0.1027 14 6 1.7610 -3.6206 0.3470 15 16 3.1714 -3.6180 1.4030 16 8 3.3216 -4.9499 1.8752 17 8 4.1942 -2.9211 0.7048 18 7 2.7933 -2.6934 2.7238 19 6 2.0342 -3.1490 3.9026 20 6 1.4295 -1.8577 4.5081 21 6 2.5741 -0.8373 4.2720 22 6 3.1645 -1.2842 2.9179 23 1 2.7469 -0.6769 2.1150 24 6 4.6652 -1.1479 2.9400 25 7 5.2293 0.0647 3.1070 26 8 5.3653 -2.1293 2.8074 27 1 -0.4850 0.8401 0.0004 28 1 -0.1506 -1.5277 -1.5524 29 1 -1.3339 -3.6399 -1.9651 30 1 -0.5529 -5.7228 -0.9137 31 1 1.4173 -5.7130 0.5593 32 1 1.2416 -3.8341 3.6018 33 1 2.6996 -3.6290 4.6202 34 1 0.5261 -1.5619 3.9747 35 1 1.2298 -1.9816 5.5725 36 1 2.1796 0.1768 4.2075 37 1 3.3232 -0.9087 5.0606 38 1 4.6694 0.8497 3.2127 39 1 6.1952 0.1524 3.1216 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475497950.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:21 Heat of formation + Delta-G solvation = -115.380158 kcal Electronic energy + Delta-G solvation = -27407.187164 eV Core-core repulsion = 23633.157426 eV Total energy + Delta-G solvation = -3774.029738 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97360 -39.40706 -38.40063 -38.01177 -36.61058 -35.67671 -34.68926 -32.08792 -31.66545 -31.37009 -30.31657 -27.34741 -24.48911 -23.45668 -22.96675 -22.36540 -21.64049 -19.87457 -19.52187 -18.89371 -18.20506 -17.89585 -17.55986 -17.04864 -16.65881 -16.02969 -15.98819 -15.65342 -15.21300 -14.99326 -14.82879 -14.53990 -14.42236 -14.12954 -13.78998 -13.52534 -13.27714 -13.01792 -12.92728 -12.86674 -12.83962 -12.69299 -12.55219 -12.24371 -12.12276 -12.06851 -11.67843 -11.61294 -11.16467 -11.09621 -10.92225 -10.60213 -9.90943 -9.76516 -9.43750 -8.77673 -6.62853 -0.23717 0.51852 0.95420 1.37324 1.49000 1.51816 1.68867 2.16571 2.24819 2.61808 2.65246 3.15832 3.40736 3.49519 3.62508 3.96773 4.06826 4.24286 4.28583 4.43214 4.47905 4.62488 4.68246 4.79185 4.91112 4.95327 5.02379 5.06748 5.14266 5.18035 5.26088 5.39997 5.51067 5.58819 5.70914 5.83626 5.96783 5.97858 6.11794 6.48073 6.48490 6.69497 6.80595 7.40301 8.19234 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010981 B = 0.009012 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.201612 B = 3106.081057 C = 4393.535934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.053 3.947 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.256 1.256 6 H -0.220 1.220 7 C -0.497 4.497 8 H 0.097 0.903 9 C 0.171 3.829 10 C -0.180 4.180 11 C -0.075 4.075 12 C -0.247 4.247 13 C -0.023 4.023 14 C -0.799 4.799 15 S 2.734 3.266 16 O -1.018 7.018 17 O -0.989 6.989 18 N -0.987 5.987 19 C 0.108 3.892 20 C -0.114 4.114 21 C -0.110 4.110 22 C 0.114 3.886 23 H 0.115 0.885 24 C 0.501 3.499 25 N -0.833 5.833 26 O -0.579 6.579 27 H 0.298 0.702 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.417 0.583 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 7.959 9.750 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.167 4.167 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.180 1.180 6 H -0.142 1.142 7 C -0.525 4.525 8 H 0.114 0.886 9 C 0.167 3.833 10 C -0.200 4.200 11 C -0.094 4.094 12 C -0.266 4.266 13 C -0.043 4.043 14 C -0.893 4.893 15 S 2.833 3.167 16 O -1.009 7.009 17 O -0.979 6.979 18 N -0.824 5.824 19 C -0.017 4.017 20 C -0.153 4.153 21 C -0.149 4.149 22 C 0.004 3.996 23 H 0.132 0.868 24 C 0.284 3.716 25 N -0.399 5.399 26 O -0.458 6.458 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.132 0.868 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.248 0.752 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.081 6.893 9.490 11.730 hybrid contribution -0.209 0.702 -0.902 1.162 sum -0.291 7.595 8.588 11.468 Atomic orbital electron populations 1.69795 1.08686 1.31642 1.31594 1.26639 0.95478 1.03751 0.90808 0.85722 0.79713 0.75808 0.81835 1.20058 1.17970 1.14200 1.20362 0.97384 0.91508 1.43241 0.88561 1.17304 0.90156 0.90364 0.85526 1.21535 0.99476 0.97380 1.01624 1.21263 0.98012 0.92831 0.97267 1.20891 1.00854 0.98480 1.06424 1.20559 0.93648 0.95235 0.94832 1.30317 1.29224 1.01841 1.27930 0.99928 0.73524 0.71054 0.72194 1.93371 1.87320 1.38310 1.81855 1.93419 1.56967 1.74214 1.73343 1.58086 1.69940 1.21721 1.32660 1.22253 0.94475 0.98761 0.86209 1.22758 0.97601 0.92092 1.02820 1.22723 0.98388 1.01551 0.92199 1.21811 0.90306 0.83752 1.03690 0.86807 1.21421 0.91918 0.83790 0.74450 1.43519 1.12009 1.08481 1.75842 1.90695 1.65206 1.39736 1.50179 0.89046 0.86688 0.85592 0.85383 0.86777 0.91295 0.90980 0.90626 0.86310 0.86376 0.88735 0.75180 0.75938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -34.84 11.05 21.83 0.24 -34.59 16 2 C 0.05 2.29 4.90 85.26 0.42 2.71 16 3 Si 0.95 31.30 29.05 68.60 1.99 33.29 16 4 H -0.28 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.26 -7.68 7.11 99.48 0.71 -6.97 16 6 H -0.22 -5.84 7.11 99.48 0.71 -5.13 16 7 C -0.50 -24.49 6.08 23.46 0.14 -24.35 16 8 H 0.10 4.96 4.83 -2.91 -0.01 4.95 16 9 C 0.17 8.88 5.52 -21.29 -0.12 8.76 16 10 C -0.18 -8.93 8.64 22.73 0.20 -8.73 16 11 C -0.08 -3.31 10.02 22.22 0.22 -3.09 16 12 C -0.25 -10.73 10.05 22.46 0.23 -10.51 16 13 C -0.02 -1.10 9.54 22.22 0.21 -0.89 16 14 C -0.80 -40.88 5.96 22.73 0.14 -40.75 16 15 S 2.73 137.56 4.72 -56.49 -0.27 137.29 16 16 O -1.02 -53.97 16.67 -128.00 -2.13 -56.11 16 17 O -0.99 -54.93 13.02 -119.54 -1.56 -56.48 16 18 N -0.99 -40.14 3.03 -488.11 -1.48 -41.61 16 19 C 0.11 3.44 7.06 86.85 0.61 4.05 16 20 C -0.11 -2.58 7.09 31.98 0.23 -2.35 16 21 C -0.11 -2.39 6.41 31.79 0.20 -2.18 16 22 C 0.11 3.91 2.91 44.60 0.13 4.04 16 23 H 0.11 4.17 4.56 -2.39 -0.01 4.16 16 24 C 0.50 17.87 6.73 87.66 0.59 18.46 16 25 N -0.83 -19.66 8.81 -173.53 -1.53 -21.19 16 26 O -0.58 -26.78 15.08 17.43 0.26 -26.52 16 27 H 0.30 11.57 8.30 -92.71 -0.77 10.80 16 28 H 0.12 5.70 6.44 -2.91 -0.02 5.68 16 29 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 30 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.11 5.16 7.33 -2.92 -0.02 5.14 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.09 1.71 7.84 -2.39 -0.02 1.69 16 38 H 0.42 6.72 8.82 -92.71 -0.82 5.90 16 39 H 0.41 8.35 8.93 -92.71 -0.83 7.52 16 Total: -1.00 -75.42 327.50 -1.79 -77.21 By element: Atomic # 1 Polarization: 44.05 SS G_CDS: -0.52 Total: 43.53 kcal Atomic # 6 Polarization: -58.01 SS G_CDS: 3.20 Total: -54.81 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -2.77 Total: -97.40 kcal Atomic # 8 Polarization: -135.68 SS G_CDS: -3.43 Total: -139.11 kcal Atomic # 14 Polarization: 31.30 SS G_CDS: 1.99 Total: 33.29 kcal Atomic # 16 Polarization: 137.56 SS G_CDS: -0.27 Total: 137.29 kcal Total: -75.42 -1.79 -77.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475497950.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.169 kcal (2) G-P(sol) polarization free energy of solvation -75.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds