Wall clock time and date at job start Tue Mar 31 2020 14:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86807 * 119.99681 * 2 1 4 4 H 1.48500 * 109.46852 * 269.99835 * 3 2 1 5 5 H 1.48493 * 109.47358 * 29.99975 * 3 2 1 6 6 H 1.48506 * 109.46635 * 150.00052 * 3 2 1 7 7 C 1.38630 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00125 * 359.97438 * 7 2 1 9 9 O 1.34816 * 119.99730 * 180.02562 * 7 2 1 10 10 C 1.35775 * 116.99727 * 174.62188 * 9 7 2 11 11 C 1.38738 * 120.08717 * 354.36616 * 10 9 7 12 12 C 1.38349 * 119.97194 * 179.97438 * 11 10 9 13 13 F 1.35109 * 119.91859 * 179.97438 * 12 11 10 14 14 C 1.38540 * 120.15760 * 0.02562 * 12 11 10 15 15 C 1.38201 * 120.17043 * 359.97438 * 14 12 11 16 16 C 1.38697 * 120.02283 * 0.02562 * 15 14 12 17 17 N 1.40139 * 120.07329 * 180.02562 * 16 15 14 18 18 C 1.34780 * 120.00187 * 334.44397 * 17 16 15 19 19 O 1.21590 * 119.99507 * 3.90944 * 18 17 16 20 20 N 1.34770 * 119.99944 * 183.90339 * 18 17 16 21 21 C 1.46501 * 119.99882 * 180.02562 * 20 18 17 22 22 H 1.08999 * 110.32851 * 35.78837 * 21 20 18 23 23 C 1.54492 * 110.36530 * 158.14655 * 21 20 18 24 24 C 1.54570 * 102.14787 * 103.49123 * 23 21 20 25 25 O 1.45834 * 104.44176 * 26.84838 * 24 23 21 26 26 C 1.34064 * 109.90426 * 329.39560 * 25 24 23 27 27 O 1.20833 * 125.09147 * 200.83508 * 26 25 24 28 28 H 0.97004 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.01659 * 359.97438 * 11 10 9 30 30 H 1.07992 * 119.91664 * 179.97438 * 14 12 11 31 31 H 1.07995 * 119.98743 * 179.74135 * 15 14 12 32 32 H 0.97006 * 119.99618 * 154.45132 * 17 16 15 33 33 H 0.97008 * 119.99936 * 0.02562 * 20 18 17 34 34 H 1.09001 * 110.86513 * 221.65476 * 23 21 20 35 35 H 1.09006 * 110.87152 * 345.32682 * 23 21 20 36 36 H 1.08994 * 110.43835 * 268.10596 * 24 23 21 37 37 H 1.08998 * 110.54729 * 145.63813 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1358 -0.0005 9 8 3.3571 -1.2005 0.0000 10 6 3.9734 -2.4051 0.1128 11 6 3.2246 -3.5511 0.3380 12 6 3.8551 -4.7773 0.4520 13 9 3.1249 -5.8926 0.6718 14 6 5.2334 -4.8641 0.3424 15 6 5.9853 -3.7265 0.1181 16 6 5.3608 -2.4935 0.0026 17 7 6.1222 -1.3393 -0.2254 18 6 7.4118 -1.2948 0.1640 19 8 7.9349 -2.2798 0.6483 20 7 8.1215 -0.1586 0.0163 21 6 9.5234 -0.1105 0.4390 22 1 10.0100 -1.0666 0.2464 23 6 10.2662 1.0304 -0.2913 24 6 10.3612 2.1127 0.8081 25 8 10.3392 1.3634 2.0590 26 6 9.6189 0.2429 1.9072 27 8 9.1208 -0.3900 2.8079 28 1 -0.4850 0.8401 0.0004 29 1 2.1501 -3.4861 0.4242 30 1 5.7215 -5.8232 0.4325 31 1 7.0599 -3.7970 0.0374 32 1 5.7210 -0.5723 -0.6633 33 1 7.7040 0.6273 -0.3698 34 1 11.2589 0.7084 -0.6059 35 1 9.6860 1.3901 -1.1411 36 1 9.5067 2.7871 0.7532 37 1 11.2925 2.6714 0.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476283674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:33 Heat of formation + Delta-G solvation = -134.235116 kcal Electronic energy + Delta-G solvation = -27134.756895 eV Core-core repulsion = 22793.696369 eV Total energy + Delta-G solvation = -4341.060527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.25828 -41.50524 -40.30258 -38.91904 -37.64550 -36.64767 -35.21977 -34.30864 -32.52235 -31.76303 -29.56982 -28.69455 -27.37357 -25.43724 -23.16436 -22.76502 -21.85353 -21.32684 -20.87920 -18.69610 -18.37785 -17.96285 -17.59251 -17.14315 -16.67757 -16.61811 -15.55863 -15.43348 -15.20312 -15.11051 -14.89425 -14.52174 -14.25897 -14.09491 -14.01554 -13.77939 -13.52677 -13.29633 -12.97418 -12.48515 -12.37065 -12.33579 -12.06119 -11.90963 -11.52650 -11.04387 -10.99391 -10.92561 -10.81297 -10.50643 -10.03235 -9.79455 -9.58557 -9.28467 -9.02271 -7.96439 -7.21985 -6.55861 -4.23177 1.65210 1.76814 2.02992 2.63212 2.91252 3.06310 3.10375 3.13192 3.20383 3.64684 3.70974 4.06305 4.10632 4.11769 4.27883 4.34089 4.52255 4.88787 4.93325 4.96113 4.99890 5.11429 5.22279 5.50354 5.70582 5.88325 5.96586 6.06374 6.40746 6.41513 6.57583 6.81438 6.88935 6.93126 7.00807 7.27636 7.45888 7.64033 7.86067 7.94186 8.54150 8.77168 9.32088 10.51523 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.004428 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.201896 B = 6322.270574 C = 8464.492639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.109 0.891 9 O -0.212 6.212 10 C 0.162 3.838 11 C -0.243 4.243 12 C 0.125 3.875 13 F -0.149 7.149 14 C -0.218 4.218 15 C -0.064 4.064 16 C 0.079 3.921 17 N -0.661 5.661 18 C 0.706 3.294 19 O -0.563 6.563 20 N -0.732 5.732 21 C 0.109 3.891 22 H 0.134 0.866 23 C -0.163 4.163 24 C 0.052 3.948 25 O -0.348 6.348 26 C 0.463 3.537 27 O -0.421 6.421 28 H 0.281 0.719 29 H 0.149 0.851 30 H 0.125 0.875 31 H 0.159 0.841 32 H 0.409 0.591 33 H 0.403 0.597 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.087 0.913 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.593 5.237 -4.886 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.185 1.185 7 C -0.466 4.466 8 H 0.126 0.874 9 O -0.117 6.117 10 C 0.107 3.893 11 C -0.264 4.264 12 C 0.105 3.895 13 F -0.128 7.128 14 C -0.238 4.238 15 C -0.085 4.085 16 C -0.016 4.016 17 N -0.307 5.307 18 C 0.406 3.594 19 O -0.440 6.440 20 N -0.392 5.392 21 C 0.001 3.999 22 H 0.152 0.848 23 C -0.201 4.201 24 C -0.023 4.023 25 O -0.265 6.265 26 C 0.299 3.701 27 O -0.300 6.300 28 H 0.092 0.908 29 H 0.167 0.833 30 H 0.143 0.857 31 H 0.176 0.824 32 H 0.244 0.756 33 H 0.238 0.762 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.781 4.470 -3.795 20.632 hybrid contribution -0.611 1.314 -0.395 1.502 sum 19.170 5.783 -4.191 20.457 Atomic orbital electron populations 1.69647 1.05555 1.28676 1.47025 1.24467 0.95035 0.98763 0.95589 0.86210 0.80430 0.81630 0.78782 1.19737 1.20617 1.18459 1.20758 0.76395 0.96861 1.52542 0.87379 1.83508 1.23102 1.24728 1.80317 1.18415 0.89383 0.86093 0.95382 1.20951 1.02092 0.90454 1.12858 1.17500 0.89129 0.81929 1.00911 1.91428 1.77915 1.51114 1.92332 1.20603 0.91470 0.99445 1.12276 1.21077 1.01353 0.88727 0.97330 1.16715 0.86749 0.86042 1.12101 1.42128 1.09500 1.17516 1.61538 1.15817 0.81362 0.83366 0.78807 1.90854 1.69797 1.33719 1.49583 1.44840 1.10995 1.14327 1.69002 1.21966 0.83401 1.03010 0.91533 0.84826 1.23252 1.03140 0.94786 0.98968 1.24170 1.04938 0.93711 0.79434 1.87085 1.66477 1.35304 1.37643 1.23673 0.75005 0.79581 0.91891 1.90798 1.39046 1.51719 1.48411 0.90829 0.83313 0.85703 0.82381 0.75556 0.76209 0.87447 0.87465 0.89460 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.13 13.96 55.48 0.77 -23.36 16 2 C 0.07 1.74 5.49 -17.52 -0.10 1.64 16 3 Si 0.90 19.83 28.62 -169.99 -4.86 14.97 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.39 -10.35 9.90 30.88 0.31 -10.05 16 8 H 0.11 2.99 5.52 -52.49 -0.29 2.70 16 9 O -0.21 -5.08 8.01 0.01 0.00 -5.08 16 10 C 0.16 3.57 6.66 -38.94 -0.26 3.31 16 11 C -0.24 -5.29 9.11 -39.36 -0.36 -5.65 16 12 C 0.13 2.50 7.29 -39.43 -0.29 2.21 16 13 F -0.15 -2.90 17.26 2.25 0.04 -2.86 16 14 C -0.22 -3.98 10.02 -39.48 -0.40 -4.37 16 15 C -0.06 -1.20 8.80 -39.43 -0.35 -1.55 16 16 C 0.08 1.54 6.48 -83.43 -0.54 1.00 16 17 N -0.66 -10.96 5.29 -14.07 -0.07 -11.04 16 18 C 0.71 11.00 8.44 -86.92 -0.73 10.26 16 19 O -0.56 -10.46 12.96 5.29 0.07 -10.39 16 20 N -0.73 -7.81 5.11 -58.74 -0.30 -8.11 16 21 C 0.11 1.00 3.28 -67.99 -0.22 0.77 16 22 H 0.13 1.28 7.65 -51.93 -0.40 0.88 16 23 C -0.16 -0.62 6.88 -25.12 -0.17 -0.79 16 24 C 0.05 0.24 7.90 37.98 0.30 0.54 16 25 O -0.35 -3.59 11.05 -38.47 -0.43 -4.01 16 26 C 0.46 5.99 8.20 36.31 0.30 6.29 16 27 O -0.42 -7.72 18.00 -18.42 -0.33 -8.05 16 28 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.15 3.40 5.71 -52.49 -0.30 3.10 16 30 H 0.12 1.97 8.06 -52.49 -0.42 1.54 16 31 H 0.16 2.87 5.50 -52.49 -0.29 2.58 16 32 H 0.41 6.05 8.38 -40.82 -0.34 5.71 16 33 H 0.40 3.04 8.48 -40.82 -0.35 2.69 16 34 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.11 0.21 7.85 -51.93 -0.41 -0.20 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -34.37 329.93 -5.85 -40.22 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -3.20 Total: 9.13 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -2.51 Total: 3.61 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.40 Total: -42.51 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.69 Total: -27.53 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.04 Total: -2.86 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.86 Total: 14.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.37 -5.85 -40.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476283674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.013 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds