Wall clock time and date at job start Tue Mar 31 2020 14:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31576 * 1 3 3 Si 1.86807 * 119.99681 * 2 1 4 4 H 1.48500 * 109.46852 * 269.99835 * 3 2 1 5 5 H 1.48493 * 109.47358 * 29.99975 * 3 2 1 6 6 H 1.48506 * 109.46635 * 150.00052 * 3 2 1 7 7 C 1.38630 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00125 * 359.97438 * 7 2 1 9 9 O 1.34816 * 119.99730 * 180.02562 * 7 2 1 10 10 C 1.35775 * 116.99727 * 174.62188 * 9 7 2 11 11 C 1.38738 * 120.08717 * 354.36616 * 10 9 7 12 12 C 1.38349 * 119.97194 * 179.97438 * 11 10 9 13 13 F 1.35109 * 119.91859 * 179.97438 * 12 11 10 14 14 C 1.38540 * 120.15760 * 0.02562 * 12 11 10 15 15 C 1.38201 * 120.17043 * 359.97438 * 14 12 11 16 16 C 1.38697 * 120.02283 * 0.02562 * 15 14 12 17 17 N 1.40139 * 120.07329 * 180.02562 * 16 15 14 18 18 C 1.34780 * 120.00187 * 334.44397 * 17 16 15 19 19 O 1.21590 * 119.99507 * 3.90944 * 18 17 16 20 20 N 1.34770 * 119.99944 * 183.90339 * 18 17 16 21 21 C 1.46501 * 119.99882 * 180.02562 * 20 18 17 22 22 H 1.08999 * 110.32851 * 35.78837 * 21 20 18 23 23 C 1.54492 * 110.36530 * 158.14655 * 21 20 18 24 24 C 1.54570 * 102.14787 * 103.49123 * 23 21 20 25 25 O 1.45834 * 104.44176 * 26.84838 * 24 23 21 26 26 C 1.34064 * 109.90426 * 329.39560 * 25 24 23 27 27 O 1.20833 * 125.09147 * 200.83508 * 26 25 24 28 28 H 0.97004 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.01659 * 359.97438 * 11 10 9 30 30 H 1.07992 * 119.91664 * 179.97438 * 14 12 11 31 31 H 1.07995 * 119.98743 * 179.74135 * 15 14 12 32 32 H 0.97006 * 119.99618 * 154.45132 * 17 16 15 33 33 H 0.97008 * 119.99936 * 0.02562 * 20 18 17 34 34 H 1.09001 * 110.86513 * 221.65476 * 23 21 20 35 35 H 1.09006 * 110.87152 * 345.32682 * 23 21 20 36 36 H 1.08994 * 110.43835 * 268.10596 * 24 23 21 37 37 H 1.08998 * 110.54729 * 145.63813 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0465 -1.4001 5 1 1.4472 2.6527 0.7000 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 -0.0005 8 1 1.4689 -2.1358 -0.0005 9 8 3.3571 -1.2005 0.0000 10 6 3.9734 -2.4051 0.1128 11 6 3.2246 -3.5511 0.3380 12 6 3.8551 -4.7773 0.4520 13 9 3.1249 -5.8926 0.6718 14 6 5.2334 -4.8641 0.3424 15 6 5.9853 -3.7265 0.1181 16 6 5.3608 -2.4935 0.0026 17 7 6.1222 -1.3393 -0.2254 18 6 7.4118 -1.2948 0.1640 19 8 7.9349 -2.2798 0.6483 20 7 8.1215 -0.1586 0.0163 21 6 9.5234 -0.1105 0.4390 22 1 10.0100 -1.0666 0.2464 23 6 10.2662 1.0304 -0.2913 24 6 10.3612 2.1127 0.8081 25 8 10.3392 1.3634 2.0590 26 6 9.6189 0.2429 1.9072 27 8 9.1208 -0.3900 2.8079 28 1 -0.4850 0.8401 0.0004 29 1 2.1501 -3.4861 0.4242 30 1 5.7215 -5.8232 0.4325 31 1 7.0599 -3.7970 0.0374 32 1 5.7210 -0.5723 -0.6633 33 1 7.7040 0.6273 -0.3698 34 1 11.2589 0.7084 -0.6059 35 1 9.6860 1.3901 -1.1411 36 1 9.5067 2.7871 0.7532 37 1 11.2925 2.6714 0.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476283674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:32 Heat of formation + Delta-G solvation = -159.425891 kcal Electronic energy + Delta-G solvation = -27135.849249 eV Core-core repulsion = 22793.696369 eV Total energy + Delta-G solvation = -4342.152881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.100 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.85355 -42.40232 -41.62953 -40.43303 -38.64993 -38.24406 -36.22125 -35.71301 -34.47972 -32.50504 -31.20503 -30.02774 -28.28064 -27.31336 -24.40680 -23.48818 -23.39678 -22.49993 -21.97204 -20.18497 -19.97231 -19.45096 -18.78422 -18.04959 -17.87356 -17.51675 -17.19951 -16.85688 -16.66867 -16.37614 -16.11847 -15.89280 -15.59595 -15.46836 -15.20615 -15.12024 -14.90960 -14.75102 -14.28084 -13.88310 -13.66368 -13.55439 -13.17196 -12.80025 -12.69096 -12.59553 -12.43928 -12.20488 -11.93957 -11.68740 -11.55084 -11.42964 -11.05142 -10.93095 -10.27392 -9.62523 -8.80030 -8.52157 -6.26701 0.15893 0.39290 0.70565 1.31712 1.38162 1.50673 1.54698 1.88393 2.24889 2.25931 2.62939 2.75092 2.92602 2.99471 3.04006 3.23221 3.37359 3.74808 3.89645 4.03692 4.13129 4.26815 4.37226 4.50691 4.70296 4.75441 4.88261 4.97185 5.06520 5.12725 5.18060 5.34511 5.43084 5.55873 5.68107 5.79590 5.83058 6.07714 6.34264 6.79144 6.80235 7.30703 7.42870 8.58907 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.004428 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.201896 B = 6322.270574 C = 8464.492639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.973 3.027 4 H -0.251 1.251 5 H -0.277 1.277 6 H -0.255 1.255 7 C -0.402 4.402 8 H 0.078 0.922 9 O -0.221 6.221 10 C 0.136 3.864 11 C -0.254 4.254 12 C 0.114 3.886 13 F -0.147 7.147 14 C -0.192 4.192 15 C -0.066 4.066 16 C 0.092 3.908 17 N -0.661 5.661 18 C 0.703 3.297 19 O -0.594 6.594 20 N -0.713 5.713 21 C 0.108 3.892 22 H 0.130 0.870 23 C -0.142 4.142 24 C 0.042 3.958 25 O -0.365 6.365 26 C 0.460 3.540 27 O -0.493 6.493 28 H 0.286 0.714 29 H 0.127 0.873 30 H 0.159 0.841 31 H 0.172 0.828 32 H 0.418 0.582 33 H 0.421 0.579 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.101 0.899 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.134 6.954 -6.437 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.188 4.188 3 Si 0.794 3.206 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.478 4.478 8 H 0.096 0.904 9 O -0.127 6.127 10 C 0.084 3.916 11 C -0.275 4.275 12 C 0.094 3.906 13 F -0.126 7.126 14 C -0.211 4.211 15 C -0.086 4.086 16 C -0.004 4.004 17 N -0.308 5.308 18 C 0.404 3.596 19 O -0.472 6.472 20 N -0.372 5.372 21 C 0.000 4.000 22 H 0.148 0.852 23 C -0.180 4.180 24 C -0.031 4.031 25 O -0.281 6.281 26 C 0.299 3.701 27 O -0.376 6.376 28 H 0.096 0.904 29 H 0.145 0.855 30 H 0.177 0.823 31 H 0.189 0.811 32 H 0.255 0.745 33 H 0.259 0.741 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.119 0.881 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 23.383 6.237 -5.398 24.795 hybrid contribution -1.498 0.641 0.097 1.632 sum 21.884 6.878 -5.301 23.544 Atomic orbital electron populations 1.69750 1.07259 1.29868 1.49069 1.25365 0.95874 1.02492 0.95030 0.85191 0.78964 0.76609 0.79860 1.17539 1.20251 1.17861 1.20639 0.77655 0.96219 1.53287 0.90442 1.83452 1.21438 1.25441 1.82376 1.18713 0.90498 0.85665 0.96734 1.20954 1.01319 0.91772 1.13462 1.17538 0.89901 0.81349 1.01859 1.91430 1.78050 1.50703 1.92378 1.20994 0.90452 1.00888 1.08788 1.21333 1.01936 0.88374 0.96995 1.16853 0.86018 0.87616 1.09932 1.42115 1.09867 1.16985 1.61821 1.15988 0.80930 0.84320 0.78335 1.90823 1.70292 1.35360 1.50773 1.44707 1.11478 1.13402 1.67640 1.22209 0.82692 1.05212 0.89872 0.85190 1.23359 1.04068 0.91780 0.98744 1.24703 1.07487 0.93636 0.77234 1.87050 1.65218 1.34738 1.41128 1.24334 0.73579 0.79431 0.92725 1.90751 1.42258 1.53945 1.50694 0.90437 0.85533 0.82308 0.81093 0.74495 0.74056 0.84718 0.84519 0.88110 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.84 13.96 21.61 0.30 -52.54 16 2 C 0.01 0.63 5.49 84.82 0.47 1.10 16 3 Si 0.97 40.78 28.62 68.60 1.96 42.74 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 6 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.40 -22.31 9.90 67.91 0.67 -21.64 16 8 H 0.08 4.63 5.52 -2.91 -0.02 4.62 16 9 O -0.22 -10.80 8.01 -22.87 -0.18 -10.99 16 10 C 0.14 6.12 6.66 22.68 0.15 6.27 16 11 C -0.25 -11.50 9.11 22.42 0.20 -11.30 16 12 C 0.11 4.51 7.29 22.37 0.16 4.67 16 13 F -0.15 -5.68 17.26 44.97 0.78 -4.90 16 14 C -0.19 -6.61 10.02 22.33 0.22 -6.39 16 15 C -0.07 -2.35 8.80 22.37 0.20 -2.15 16 16 C 0.09 3.53 6.48 38.22 0.25 3.78 16 17 N -0.66 -20.89 5.29 -316.69 -1.68 -22.57 16 18 C 0.70 20.61 8.44 179.06 1.51 22.12 16 19 O -0.59 -21.25 12.96 -4.00 -0.05 -21.30 16 20 N -0.71 -13.18 5.11 -458.02 -2.34 -15.52 16 21 C 0.11 1.67 3.28 44.95 0.15 1.81 16 22 H 0.13 2.19 7.65 -2.39 -0.02 2.17 16 23 C -0.14 -0.35 6.88 31.64 0.22 -0.13 16 24 C 0.04 0.20 7.90 72.52 0.57 0.77 16 25 O -0.36 -6.77 11.05 -50.15 -0.55 -7.33 16 26 C 0.46 11.44 8.20 71.43 0.59 12.02 16 27 O -0.49 -18.45 18.00 21.62 0.39 -18.06 16 28 H 0.29 15.04 8.31 -92.71 -0.77 14.27 16 29 H 0.13 6.25 5.71 -2.91 -0.02 6.24 16 30 H 0.16 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.17 5.82 5.50 -2.91 -0.02 5.80 16 32 H 0.42 11.57 8.38 -92.70 -0.78 10.79 16 33 H 0.42 4.74 8.48 -92.70 -0.79 3.95 16 34 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 35 H 0.14 -0.35 7.85 -2.38 -0.02 -0.37 16 36 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 Total: -1.00 -80.65 329.93 3.60 -77.05 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.38 Total: 22.46 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.36 Total: 10.94 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -3.72 Total: -90.62 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -0.40 Total: -57.67 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.78 Total: -4.90 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 1.96 Total: 42.74 kcal Total: -80.65 3.60 -77.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476283674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.376 kcal (2) G-P(sol) polarization free energy of solvation -80.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds