Wall clock time and date at job start Tue Mar 31 2020 14:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48504 * 109.46918 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46991 * 299.99911 * 3 2 1 6 6 H 1.48504 * 109.47098 * 60.00155 * 3 2 1 7 7 C 1.39927 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00272 * 196.78704 * 7 2 1 9 9 C 1.41410 * 120.00348 * 16.78392 * 7 2 1 10 10 C 1.40783 * 120.21032 * 25.17931 * 9 7 2 11 11 C 1.37638 * 119.88699 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.31974 * 359.72426 * 11 10 9 13 13 C 1.39244 * 120.42840 * 0.55297 * 12 11 10 14 14 N 1.39961 * 119.94774 * 179.72610 * 13 12 11 15 15 C 1.34775 * 119.99537 * 325.52469 * 14 13 12 16 16 O 1.21583 * 120.00361 * 354.85752 * 15 14 13 17 17 N 1.34784 * 119.99970 * 174.85527 * 15 14 13 18 18 C 1.46495 * 120.00124 * 180.02562 * 17 15 14 19 19 H 1.08996 * 110.01386 * 326.38143 * 18 17 15 20 20 C 1.53876 * 110.02956 * 204.99718 * 18 17 15 21 21 C 1.54162 * 108.70532 * 193.53119 * 20 18 17 22 22 S 1.82919 * 105.08949 * 27.90886 * 21 20 18 23 23 O 1.42094 * 109.35202 * 111.27443 * 22 21 20 24 24 O 1.42098 * 109.35442 * 244.34751 * 22 21 20 25 25 C 1.55413 * 110.04318 * 87.65504 * 18 17 15 26 26 C 1.38276 * 120.10747 * 359.45052 * 13 12 11 27 27 H 0.96995 * 119.99794 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.05184 * 359.97438 * 10 9 7 29 29 H 1.07993 * 119.84002 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.78945 * 180.27547 * 12 11 10 31 31 H 0.96999 * 120.00593 * 145.53537 * 14 13 12 32 32 H 0.97001 * 119.99820 * 359.97438 * 17 15 14 33 33 H 1.08999 * 109.64351 * 73.67865 * 20 18 17 34 34 H 1.08997 * 109.53827 * 313.31787 * 20 18 17 35 35 H 1.09004 * 110.32038 * 269.00492 * 21 20 18 36 36 H 1.09004 * 110.40471 * 146.85861 * 21 20 18 37 37 H 1.08993 * 110.76074 * 43.44481 * 25 18 17 38 38 H 1.09001 * 110.95537 * 279.88889 * 25 18 17 39 39 H 1.07996 * 120.16063 * 180.29490 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7024 1.3464 -0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0535 -1.2319 0.2696 9 6 1.3462 -2.4102 -0.3547 10 6 0.2109 -2.3734 -1.1864 11 6 -0.4278 -3.5440 -1.5273 12 6 0.0443 -4.7598 -1.0607 13 6 1.1627 -4.8112 -0.2327 14 7 1.6277 -6.0446 0.2377 15 6 0.7537 -7.0309 0.5204 16 8 -0.4420 -6.8203 0.4568 17 7 1.2053 -8.2507 0.8737 18 6 0.2553 -9.3229 1.1805 19 1 -0.6373 -8.9078 1.6484 20 6 0.9094 -10.3548 2.1159 21 6 0.0305 -11.6209 2.1470 22 16 -0.8188 -11.6510 0.5272 23 8 -0.3224 -12.7357 -0.2447 24 8 -2.2183 -11.5061 0.7265 25 6 -0.1317 -10.0800 -0.1204 26 6 1.8180 -3.6461 0.1210 27 1 -0.4849 0.8400 0.0004 28 1 -0.1582 -1.4282 -1.5562 29 1 -1.2984 -3.5148 -2.1657 30 1 -0.4608 -5.6734 -1.3372 31 1 2.5789 -6.1897 0.3603 32 1 2.1593 -8.4188 0.9240 33 1 0.9898 -9.9396 3.1205 34 1 1.9022 -10.6070 1.7432 35 1 -0.6981 -11.5562 2.9553 36 1 0.6493 -12.5103 2.2665 37 1 0.7487 -10.2671 -0.7350 38 1 -0.8869 -9.5297 -0.6817 39 1 2.6883 -3.6853 0.7593 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476611052.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:09 Heat of formation + Delta-G solvation = -101.895578 kcal Electronic energy + Delta-G solvation = -24347.425096 eV Core-core repulsion = 20573.980093 eV Total energy + Delta-G solvation = -3773.445003 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52771 -39.37148 -38.12646 -37.85204 -37.06531 -36.07465 -34.97395 -33.81741 -31.75119 -30.65653 -29.54886 -27.16441 -26.10650 -23.58431 -22.81452 -22.21666 -21.72845 -19.87040 -19.48707 -19.42660 -18.03529 -17.60336 -17.35689 -16.93498 -16.72148 -16.56632 -16.09165 -16.00918 -15.47736 -15.35474 -14.84358 -14.83461 -14.63401 -14.10489 -13.72784 -13.48310 -13.42629 -13.26699 -13.13821 -12.96506 -12.88695 -12.87874 -12.72663 -12.30474 -12.06227 -11.92299 -11.85784 -11.45087 -11.40744 -11.25019 -11.07221 -10.74781 -10.24260 -9.39900 -8.72530 -8.57536 -6.33867 -0.95626 0.94930 0.99030 1.41085 1.47026 1.53695 1.56890 1.72102 2.13584 2.23350 2.65693 2.78757 3.02907 3.23378 3.41021 3.55387 3.74166 3.76252 3.94677 4.02935 4.42000 4.51911 4.66473 4.69583 4.84297 4.92199 5.03062 5.03760 5.05135 5.14028 5.21223 5.33658 5.37097 5.75771 5.78751 6.05176 6.10600 6.19143 6.38843 6.70346 6.94663 7.00048 7.10214 7.56403 8.36559 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.038029 B = 0.002273 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.098653 B =12317.488284 C =12656.614214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.032 3.968 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.494 4.494 8 H 0.082 0.918 9 C 0.095 3.905 10 C -0.197 4.197 11 C -0.099 4.099 12 C -0.239 4.239 13 C 0.183 3.817 14 N -0.669 5.669 15 C 0.697 3.303 16 O -0.614 6.614 17 N -0.709 5.709 18 C 0.156 3.844 19 H 0.094 0.906 20 C -0.116 4.116 21 C -0.555 4.555 22 S 2.397 3.603 23 O -0.974 6.974 24 O -0.985 6.985 25 C -0.606 4.606 26 C -0.253 4.253 27 H 0.287 0.713 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.419 0.581 32 H 0.421 0.579 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.158 0.842 36 H 0.175 0.825 37 H 0.160 0.840 38 H 0.121 0.879 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 -19.811 5.802 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.177 1.177 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.524 4.524 8 H 0.100 0.900 9 C 0.092 3.908 10 C -0.217 4.217 11 C -0.118 4.118 12 C -0.260 4.260 13 C 0.089 3.911 14 N -0.317 5.317 15 C 0.397 3.603 16 O -0.493 6.493 17 N -0.367 5.367 18 C 0.048 3.952 19 H 0.112 0.888 20 C -0.155 4.155 21 C -0.689 4.689 22 S 2.584 3.416 23 O -0.971 6.971 24 O -0.982 6.982 25 C -0.737 4.737 26 C -0.275 4.275 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.256 0.744 32 H 0.259 0.741 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.176 0.824 36 H 0.193 0.807 37 H 0.178 0.822 38 H 0.139 0.861 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.644 -20.218 5.339 21.659 hybrid contribution 0.962 1.422 0.046 1.718 sum 6.606 -18.795 5.385 20.638 Atomic orbital electron populations 1.69915 1.09192 1.30463 1.35864 1.26819 0.95451 1.04745 0.91227 0.85119 0.79549 0.76046 0.78722 1.17700 1.19174 1.19317 1.19832 0.98096 0.91918 1.42516 0.89954 1.17753 0.91481 0.92759 0.88796 1.21300 1.00565 0.96745 1.03113 1.20784 0.98677 0.92741 0.99581 1.20438 1.01889 0.96892 1.06808 1.17171 0.95738 0.83656 0.94566 1.42341 1.10142 1.10951 1.68289 1.16164 0.84915 0.81289 0.77899 1.90951 1.16088 1.82444 1.59851 1.44627 1.10766 1.07589 1.73709 1.21654 0.94280 0.87649 0.91594 0.88828 1.22212 1.00446 0.90298 1.02529 1.30269 1.12764 1.07282 1.18571 1.08603 0.75642 0.76817 0.80517 1.93567 1.82089 1.51294 1.70116 1.93580 1.31326 1.86878 1.86382 1.31201 1.14365 1.19900 1.08274 1.20835 1.06466 0.91004 1.09176 0.90235 0.87983 0.87706 0.88106 0.74359 0.74085 0.86095 0.85680 0.82425 0.80682 0.82173 0.86085 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.87 10.94 21.82 0.24 -43.63 16 2 C 0.03 1.61 5.16 85.25 0.44 2.05 16 3 Si 0.98 37.61 29.59 68.60 2.03 39.64 16 4 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 7 C -0.49 -26.06 9.05 23.46 0.21 -25.85 16 8 H 0.08 4.09 7.90 -2.91 -0.02 4.07 16 9 C 0.10 5.10 5.57 -21.31 -0.12 4.98 16 10 C -0.20 -10.70 8.69 22.75 0.20 -10.50 16 11 C -0.10 -4.95 10.02 22.20 0.22 -4.73 16 12 C -0.24 -11.42 8.66 22.58 0.20 -11.22 16 13 C 0.18 7.98 6.25 38.09 0.24 8.22 16 14 N -0.67 -21.13 5.34 -317.32 -1.69 -22.83 16 15 C 0.70 21.51 8.29 179.05 1.48 22.99 16 16 O -0.61 -25.61 13.74 -3.98 -0.05 -25.67 16 17 N -0.71 -12.14 5.13 -452.45 -2.32 -14.46 16 18 C 0.16 2.26 2.91 46.12 0.13 2.39 16 19 H 0.09 1.82 7.56 -2.39 -0.02 1.80 16 20 C -0.12 -0.45 5.93 31.28 0.19 -0.26 16 21 C -0.56 -2.17 7.26 72.38 0.53 -1.64 16 22 S 2.40 35.17 6.09 -56.49 -0.34 34.82 16 23 O -0.97 -20.51 18.14 -127.47 -2.31 -22.82 16 24 O -0.98 -24.57 18.15 -127.47 -2.31 -26.88 16 25 C -0.61 -9.16 6.99 72.81 0.51 -8.65 16 26 C -0.25 -11.91 9.70 22.85 0.22 -11.69 16 27 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 28 H 0.10 5.77 6.17 -2.91 -0.02 5.75 16 29 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.10 4.79 6.47 -2.91 -0.02 4.77 16 31 H 0.42 9.31 8.83 -92.71 -0.82 8.49 16 32 H 0.42 3.45 8.62 -92.71 -0.80 2.65 16 33 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.12 -0.24 8.10 -2.39 -0.02 -0.26 16 35 H 0.16 0.31 8.14 -2.38 -0.02 0.29 16 36 H 0.18 -0.24 8.14 -2.39 -0.02 -0.25 16 37 H 0.16 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -85.71 341.71 -2.83 -88.54 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -0.51 Total: 27.18 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 4.45 Total: -33.90 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -3.78 Total: -80.92 kcal Atomic # 8 Polarization: -70.69 SS G_CDS: -4.68 Total: -75.37 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.64 kcal Atomic # 16 Polarization: 35.17 SS G_CDS: -0.34 Total: 34.82 kcal Total: -85.71 -2.83 -88.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476611052.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.352 kcal (2) G-P(sol) polarization free energy of solvation -85.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds