Wall clock time and date at job start Tue Mar 31 2020 14:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86800 * 119.99684 * 2 1 4 4 H 1.48493 * 109.46998 * 269.99482 * 3 2 1 5 5 H 1.48496 * 109.47161 * 29.99834 * 3 2 1 6 6 H 1.48507 * 109.46893 * 149.99858 * 3 2 1 7 7 C 1.39931 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99919 * 196.78180 * 7 2 1 9 9 C 1.41413 * 119.99939 * 16.79034 * 7 2 1 10 10 C 1.40769 * 120.20816 * 25.16453 * 9 7 2 11 11 C 1.37644 * 119.88264 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.32151 * 0.02562 * 11 10 9 13 13 C 1.39244 * 120.42812 * 359.95911 * 12 11 10 14 14 N 1.39964 * 119.94655 * 180.02562 * 13 12 11 15 15 C 1.34781 * 119.99741 * 145.77417 * 14 13 12 16 16 O 1.21579 * 119.99863 * 354.84688 * 15 14 13 17 17 N 1.34778 * 119.99402 * 174.84860 * 15 14 13 18 18 C 1.46503 * 119.99376 * 180.27458 * 17 15 14 19 19 H 1.08997 * 110.01496 * 33.34870 * 18 17 15 20 20 C 1.53879 * 110.02339 * 154.72384 * 18 17 15 21 21 C 1.54161 * 108.70294 * 166.47019 * 20 18 17 22 22 S 1.82919 * 105.08814 * 332.08933 * 21 20 18 23 23 O 1.42102 * 109.35479 * 115.52126 * 22 21 20 24 24 O 1.42092 * 109.35575 * 248.72659 * 22 21 20 25 25 C 1.55040 * 110.02747 * 271.90983 * 18 17 15 26 26 C 1.38275 * 120.10899 * 0.27191 * 13 12 11 27 27 H 0.96998 * 120.00201 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.06428 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.83758 * 179.97438 * 11 10 9 30 30 H 1.08000 * 119.78838 * 179.97438 * 12 11 10 31 31 H 0.96997 * 119.99491 * 325.76717 * 14 13 12 32 32 H 0.96999 * 120.00483 * 359.97438 * 17 15 14 33 33 H 1.09005 * 109.64541 * 286.32117 * 20 18 17 34 34 H 1.09000 * 109.65010 * 46.75004 * 20 18 17 35 35 H 1.09005 * 110.32052 * 90.98917 * 21 20 18 36 36 H 1.09000 * 110.32538 * 213.08488 * 21 20 18 37 37 H 1.09000 * 110.79230 * 316.55279 * 25 18 17 38 38 H 1.09004 * 110.79166 * 80.00856 * 25 18 17 39 39 H 1.07991 * 120.16280 * 179.74525 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0535 -1.2316 0.2706 9 6 1.3462 -2.4106 -0.3527 10 6 0.2109 -2.3742 -1.1842 11 6 -0.4285 -3.5450 -1.5234 12 6 0.0395 -4.7599 -1.0500 13 6 1.1615 -4.8112 -0.2270 14 7 1.6259 -6.0442 0.2452 15 6 2.9477 -6.2463 0.4147 16 8 3.7422 -5.3932 0.0699 17 7 3.3884 -7.3943 0.9663 18 6 4.8248 -7.6115 1.1561 19 1 5.3194 -6.6653 1.3754 20 6 5.0598 -8.6077 2.3051 21 6 6.5279 -9.0758 2.2611 22 16 7.0189 -8.9387 0.5044 23 8 8.0414 -7.9602 0.3761 24 8 7.2098 -10.2396 -0.0342 25 6 5.4379 -8.2501 -0.1167 26 6 1.8146 -3.6455 0.1288 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1580 -1.4294 -1.5554 29 1 -1.2997 -3.5163 -2.1610 30 1 -0.4691 -5.6733 -1.3212 31 1 0.9965 -6.7531 0.4505 32 1 2.7544 -8.0749 1.2417 33 1 4.8589 -8.1205 3.2593 34 1 4.3995 -9.4668 2.1863 35 1 7.1502 -8.4289 2.8796 36 1 6.6060 -10.1095 2.5979 37 1 4.7950 -9.0423 -0.5003 38 1 5.6189 -7.4936 -0.8804 39 1 2.6824 -3.6839 0.7704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001476611053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:12 Heat of formation + Delta-G solvation = -71.710756 kcal Electronic energy + Delta-G solvation = -24529.427615 eV Core-core repulsion = 20757.291524 eV Total energy + Delta-G solvation = -3772.136091 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20441 -37.90472 -37.32006 -36.71646 -36.25895 -34.45046 -33.35595 -32.72362 -29.86203 -29.81198 -27.92653 -25.45878 -25.24481 -22.38111 -21.34551 -20.87266 -20.17977 -19.14347 -18.26031 -17.78792 -17.11765 -16.88792 -16.06465 -15.65440 -15.41098 -15.07265 -14.79000 -14.68188 -14.46675 -14.34450 -13.97168 -13.24751 -13.11236 -12.86421 -12.74534 -12.43933 -12.38725 -12.26216 -12.13576 -11.67385 -11.52190 -11.29089 -11.13387 -11.11740 -10.93382 -10.79363 -10.46011 -10.25671 -9.74254 -9.55841 -9.25399 -9.09438 -9.04770 -7.45239 -6.92236 -6.71077 -4.33665 -0.30809 2.15619 2.62140 2.79386 2.93561 3.10215 3.15226 3.21635 3.25474 3.57338 3.68132 3.96994 4.02169 4.08025 4.23352 4.37855 4.48775 4.59723 4.65357 5.07560 5.11360 5.25711 5.43252 5.57394 5.71451 6.21537 6.27816 6.38327 6.66567 6.73268 7.03487 7.08115 7.22090 7.30326 7.65777 7.78169 7.98003 8.10543 8.21993 8.35579 8.65875 8.84255 8.95683 8.99581 10.21882 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.002769 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.999805 B =10110.374845 C =11065.531517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.121 3.879 10 C -0.172 4.172 11 C -0.092 4.092 12 C -0.263 4.263 13 C 0.167 3.833 14 N -0.678 5.678 15 C 0.699 3.301 16 O -0.560 6.560 17 N -0.737 5.737 18 C 0.169 3.831 19 H 0.116 0.884 20 C -0.123 4.123 21 C -0.591 4.591 22 S 2.394 3.606 23 O -0.930 6.930 24 O -0.940 6.940 25 C -0.605 4.605 26 C -0.210 4.210 27 H 0.280 0.720 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.395 0.605 32 H 0.397 0.603 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -17.341 5.612 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.097 0.903 9 C 0.118 3.882 10 C -0.192 4.192 11 C -0.111 4.111 12 C -0.285 4.285 13 C 0.075 3.925 14 N -0.324 5.324 15 C 0.399 3.601 16 O -0.434 6.434 17 N -0.394 5.394 18 C 0.060 3.940 19 H 0.134 0.866 20 C -0.162 4.162 21 C -0.721 4.721 22 S 2.576 3.424 23 O -0.927 6.927 24 O -0.937 6.937 25 C -0.737 4.737 26 C -0.232 4.232 27 H 0.090 0.910 28 H 0.137 0.863 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.228 0.772 32 H 0.231 0.769 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.076 -16.607 4.870 18.697 hybrid contribution -1.140 0.159 0.643 1.318 sum 5.936 -16.448 5.513 18.335 Atomic orbital electron populations 1.69828 1.07530 1.29113 1.35654 1.25904 0.94739 1.01284 0.92238 0.86301 0.80520 0.80491 0.79350 1.19260 1.20384 1.18574 1.19601 0.97815 0.90938 1.40424 0.90320 1.17486 0.90853 0.91628 0.88278 1.21353 0.99393 0.96870 1.01591 1.20447 0.98526 0.92671 0.99443 1.19995 1.02596 0.96888 1.08971 1.17220 0.95982 0.82472 0.96868 1.42561 1.05068 1.15950 1.68853 1.15959 0.83153 0.82015 0.78981 1.91001 1.54133 1.43727 1.54585 1.44912 1.06370 1.19938 1.68219 1.21319 0.82944 0.99918 0.89796 0.86591 1.22145 0.93412 0.99906 1.00723 1.30466 1.05451 1.11302 1.24835 1.08927 0.78226 0.75752 0.79530 1.93655 1.52981 1.61085 1.84994 1.93615 1.85273 1.38209 1.76562 1.31201 1.20937 1.12976 1.08541 1.20986 1.04331 0.90903 1.06960 0.90953 0.86319 0.89045 0.89382 0.77181 0.76905 0.88010 0.89131 0.84075 0.84043 0.84201 0.83550 0.87529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.62 10.94 55.55 0.61 -20.01 16 2 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 3 Si 0.91 19.09 29.59 -169.99 -5.03 14.06 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -12.54 9.05 -37.74 -0.34 -12.88 16 8 H 0.08 2.13 7.90 -52.49 -0.41 1.71 16 9 C 0.12 3.29 5.57 -106.85 -0.59 2.70 16 10 C -0.17 -4.50 8.69 -38.84 -0.34 -4.83 16 11 C -0.09 -2.12 10.02 -39.69 -0.40 -2.52 16 12 C -0.26 -5.67 9.97 -39.10 -0.39 -6.06 16 13 C 0.17 3.68 6.25 -83.76 -0.52 3.15 16 14 N -0.68 -11.32 5.34 -14.27 -0.08 -11.40 16 15 C 0.70 11.53 8.29 -86.91 -0.72 10.81 16 16 O -0.56 -12.02 13.75 5.30 0.07 -11.95 16 17 N -0.74 -7.58 5.13 -57.17 -0.29 -7.87 16 18 C 0.17 1.48 2.91 -66.39 -0.19 1.29 16 19 H 0.12 1.23 7.56 -51.93 -0.39 0.84 16 20 C -0.12 -0.58 5.92 -25.67 -0.15 -0.74 16 21 C -0.59 -2.62 7.26 37.76 0.27 -2.35 16 22 S 2.39 19.32 6.11 -107.50 -0.66 18.66 16 23 O -0.93 -11.58 18.15 -57.71 -1.05 -12.62 16 24 O -0.94 -10.47 18.14 -57.71 -1.05 -11.52 16 25 C -0.61 -5.02 6.95 38.24 0.27 -4.76 16 26 C -0.21 -5.37 8.39 -38.68 -0.32 -5.70 16 27 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 28 H 0.12 3.18 6.17 -52.48 -0.32 2.86 16 29 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.39 4.87 8.84 -40.82 -0.36 4.51 16 32 H 0.40 2.57 8.62 -40.82 -0.35 2.22 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.24 8.11 -51.93 -0.42 -0.18 16 35 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.14 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.14 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.15 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.11 2.81 6.48 -52.49 -0.34 2.47 16 LS Contribution 341.69 15.07 5.15 5.15 Total: -1.00 -37.62 341.69 -10.54 -48.17 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.70 Total: 9.37 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -3.52 Total: -20.03 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.24 Total: -39.28 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -2.02 Total: -36.09 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Atomic # 16 Polarization: 19.32 SS G_CDS: -0.66 Total: 18.66 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.62 -10.54 -48.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476611053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.543 kcal (2) G-P(sol) polarization free energy of solvation -37.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds