Wall clock time and date at job start Tue Mar 31 2020 14:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86800 * 119.99684 * 2 1 4 4 H 1.48493 * 109.46998 * 269.99482 * 3 2 1 5 5 H 1.48496 * 109.47161 * 29.99834 * 3 2 1 6 6 H 1.48507 * 109.46893 * 149.99858 * 3 2 1 7 7 C 1.39931 * 120.00051 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99919 * 196.78180 * 7 2 1 9 9 C 1.41413 * 119.99939 * 16.79034 * 7 2 1 10 10 C 1.40769 * 120.20816 * 25.16453 * 9 7 2 11 11 C 1.37644 * 119.88264 * 180.02562 * 10 9 7 12 12 C 1.38529 * 120.32151 * 0.02562 * 11 10 9 13 13 C 1.39244 * 120.42812 * 359.95911 * 12 11 10 14 14 N 1.39964 * 119.94655 * 180.02562 * 13 12 11 15 15 C 1.34781 * 119.99741 * 145.77417 * 14 13 12 16 16 O 1.21579 * 119.99863 * 354.84688 * 15 14 13 17 17 N 1.34778 * 119.99402 * 174.84860 * 15 14 13 18 18 C 1.46503 * 119.99376 * 180.27458 * 17 15 14 19 19 H 1.08997 * 110.01496 * 33.34870 * 18 17 15 20 20 C 1.53879 * 110.02339 * 154.72384 * 18 17 15 21 21 C 1.54161 * 108.70294 * 166.47019 * 20 18 17 22 22 S 1.82919 * 105.08814 * 332.08933 * 21 20 18 23 23 O 1.42102 * 109.35479 * 115.52126 * 22 21 20 24 24 O 1.42092 * 109.35575 * 248.72659 * 22 21 20 25 25 C 1.55040 * 110.02747 * 271.90983 * 18 17 15 26 26 C 1.38275 * 120.10899 * 0.27191 * 13 12 11 27 27 H 0.96998 * 120.00201 * 0.02562 * 1 2 3 28 28 H 1.08004 * 120.06428 * 0.02562 * 10 9 7 29 29 H 1.08001 * 119.83758 * 179.97438 * 11 10 9 30 30 H 1.08000 * 119.78838 * 179.97438 * 12 11 10 31 31 H 0.96997 * 119.99491 * 325.76717 * 14 13 12 32 32 H 0.96999 * 120.00483 * 359.97438 * 17 15 14 33 33 H 1.09005 * 109.64541 * 286.32117 * 20 18 17 34 34 H 1.09000 * 109.65010 * 46.75004 * 20 18 17 35 35 H 1.09005 * 110.32052 * 90.98917 * 21 20 18 36 36 H 1.09000 * 110.32538 * 213.08488 * 21 20 18 37 37 H 1.09000 * 110.79230 * 316.55279 * 25 18 17 38 38 H 1.09004 * 110.79166 * 80.00856 * 25 18 17 39 39 H 1.07991 * 120.16280 * 179.74525 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5399 1.4402 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0535 -1.2316 0.2706 9 6 1.3462 -2.4106 -0.3527 10 6 0.2109 -2.3742 -1.1842 11 6 -0.4285 -3.5450 -1.5234 12 6 0.0395 -4.7599 -1.0500 13 6 1.1615 -4.8112 -0.2270 14 7 1.6259 -6.0442 0.2452 15 6 2.9477 -6.2463 0.4147 16 8 3.7422 -5.3932 0.0699 17 7 3.3884 -7.3943 0.9663 18 6 4.8248 -7.6115 1.1561 19 1 5.3194 -6.6653 1.3754 20 6 5.0598 -8.6077 2.3051 21 6 6.5279 -9.0758 2.2611 22 16 7.0189 -8.9387 0.5044 23 8 8.0414 -7.9602 0.3761 24 8 7.2098 -10.2396 -0.0342 25 6 5.4379 -8.2501 -0.1167 26 6 1.8146 -3.6455 0.1288 27 1 -0.4850 0.8400 -0.0004 28 1 -0.1580 -1.4294 -1.5554 29 1 -1.2997 -3.5163 -2.1610 30 1 -0.4691 -5.6733 -1.3212 31 1 0.9965 -6.7531 0.4505 32 1 2.7544 -8.0749 1.2417 33 1 4.8589 -8.1205 3.2593 34 1 4.3995 -9.4668 2.1863 35 1 7.1502 -8.4289 2.8796 36 1 6.6060 -10.1095 2.5979 37 1 4.7950 -9.0423 -0.5003 38 1 5.6189 -7.4936 -0.8804 39 1 2.6824 -3.6839 0.7704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001476611053.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:11 Heat of formation + Delta-G solvation = -102.109658 kcal Electronic energy + Delta-G solvation = -24530.745810 eV Core-core repulsion = 20757.291524 eV Total energy + Delta-G solvation = -3773.454286 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52743 -39.36190 -38.13470 -37.85480 -37.06724 -36.14063 -34.92681 -33.83836 -31.73378 -30.64639 -29.50399 -27.24579 -26.09443 -23.62647 -22.75915 -22.22022 -21.68555 -19.86199 -19.63833 -19.32991 -18.05035 -17.62711 -17.39721 -16.87307 -16.72026 -16.46369 -16.20736 -15.97201 -15.49890 -15.33944 -14.94902 -14.78252 -14.67227 -14.06727 -13.60226 -13.53555 -13.42771 -13.27353 -13.14174 -13.00163 -12.91954 -12.88042 -12.77385 -12.17664 -12.10779 -11.97696 -11.86233 -11.54688 -11.41705 -11.23700 -10.98519 -10.78619 -10.23340 -9.37762 -8.72168 -8.57983 -6.36022 -0.95675 0.93403 1.03858 1.36491 1.45751 1.49615 1.50483 1.73904 2.14692 2.21479 2.64872 2.75499 3.03124 3.24493 3.41603 3.54896 3.74270 3.77169 3.94002 4.02670 4.48594 4.51368 4.65498 4.66634 4.83945 4.90855 5.02676 5.06244 5.12180 5.13931 5.20697 5.33388 5.36961 5.72974 5.84005 6.07082 6.12810 6.19521 6.37791 6.70402 6.95706 7.02363 7.10798 7.58868 8.33930 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.018514 B = 0.002769 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.999805 B =10110.374845 C =11065.531517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.090 3.910 10 C -0.200 4.200 11 C -0.091 4.091 12 C -0.250 4.250 13 C 0.177 3.823 14 N -0.667 5.667 15 C 0.694 3.306 16 O -0.616 6.616 17 N -0.708 5.708 18 C 0.156 3.844 19 H 0.089 0.911 20 C -0.116 4.116 21 C -0.556 4.556 22 S 2.399 3.601 23 O -0.985 6.985 24 O -0.972 6.972 25 C -0.606 4.606 26 C -0.236 4.236 27 H 0.289 0.711 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.420 0.580 32 H 0.421 0.579 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.156 0.844 36 H 0.177 0.823 37 H 0.163 0.837 38 H 0.119 0.881 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -19.990 6.964 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.189 1.189 7 C -0.534 4.534 8 H 0.080 0.920 9 C 0.087 3.913 10 C -0.220 4.220 11 C -0.110 4.110 12 C -0.272 4.272 13 C 0.083 3.917 14 N -0.316 5.316 15 C 0.394 3.606 16 O -0.494 6.494 17 N -0.366 5.366 18 C 0.047 3.953 19 H 0.107 0.893 20 C -0.154 4.154 21 C -0.690 4.690 22 S 2.586 3.414 23 O -0.982 6.982 24 O -0.969 6.969 25 C -0.737 4.737 26 C -0.258 4.258 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.258 0.742 32 H 0.260 0.740 33 H 0.137 0.863 34 H 0.145 0.855 35 H 0.174 0.826 36 H 0.194 0.806 37 H 0.181 0.819 38 H 0.137 0.863 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.800 -19.358 6.213 21.142 hybrid contribution -0.793 0.776 0.263 1.140 sum 5.007 -18.582 6.476 20.306 Atomic orbital electron populations 1.69855 1.08648 1.30496 1.35779 1.26663 0.95586 1.04120 0.91232 0.85248 0.78954 0.76142 0.79597 1.18600 1.18518 1.18936 1.19744 0.97479 0.92775 1.43355 0.92034 1.17816 0.91895 0.92405 0.89183 1.21311 1.00154 0.97623 1.02954 1.20826 0.98889 0.92198 0.99070 1.20440 1.01751 0.98023 1.06971 1.17250 0.95306 0.83463 0.95719 1.42288 1.05892 1.14845 1.68566 1.16218 0.82519 0.82980 0.78838 1.90985 1.55465 1.46181 1.56813 1.44600 1.07658 1.18286 1.66079 1.21571 0.81488 1.00396 0.91796 0.89260 1.22212 0.93994 1.00044 0.99176 1.30276 1.05233 1.13953 1.19493 1.08552 0.77302 0.74071 0.81498 1.93584 1.55458 1.62448 1.86731 1.93567 1.85684 1.38981 1.78667 1.31139 1.21735 1.12845 1.07954 1.20953 1.04597 0.92202 1.08092 0.90031 0.87912 0.85953 0.84927 0.74193 0.74015 0.86312 0.85456 0.82577 0.80553 0.81902 0.86299 0.89698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.90 10.94 21.82 0.24 -43.67 16 2 C 0.04 2.05 5.16 85.25 0.44 2.49 16 3 Si 0.98 40.36 29.59 68.60 2.03 42.39 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.50 -29.39 9.05 23.46 0.21 -29.18 16 8 H 0.06 3.63 7.90 -2.91 -0.02 3.60 16 9 C 0.09 5.16 5.57 -21.31 -0.12 5.05 16 10 C -0.20 -10.77 8.69 22.75 0.20 -10.58 16 11 C -0.09 -4.10 10.02 22.20 0.22 -3.88 16 12 C -0.25 -10.19 9.97 22.58 0.23 -9.97 16 13 C 0.18 7.69 6.25 38.09 0.24 7.93 16 14 N -0.67 -21.05 5.34 -317.32 -1.70 -22.75 16 15 C 0.69 22.45 8.29 179.05 1.48 23.94 16 16 O -0.62 -27.55 13.75 -3.96 -0.05 -27.60 16 17 N -0.71 -12.87 5.13 -453.06 -2.32 -15.19 16 18 C 0.16 2.48 2.91 45.99 0.13 2.61 16 19 H 0.09 1.95 7.56 -2.39 -0.02 1.93 16 20 C -0.12 -0.57 5.92 31.28 0.19 -0.39 16 21 C -0.56 -2.72 7.26 72.38 0.53 -2.19 16 22 S 2.40 37.25 6.11 -56.49 -0.34 36.90 16 23 O -0.99 -25.78 18.15 -127.49 -2.31 -28.09 16 24 O -0.97 -20.87 18.14 -127.49 -2.31 -23.19 16 25 C -0.61 -9.72 6.95 72.68 0.51 -9.21 16 26 C -0.24 -12.63 8.39 22.85 0.19 -12.44 16 27 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 28 H 0.10 5.74 6.17 -2.91 -0.02 5.73 16 29 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 31 H 0.42 8.81 8.84 -92.71 -0.82 7.99 16 32 H 0.42 3.62 8.62 -92.71 -0.80 2.82 16 33 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 34 H 0.13 -0.17 8.11 -2.39 -0.02 -0.19 16 35 H 0.16 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.18 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.08 4.80 6.48 -2.92 -0.02 4.78 16 Total: -1.00 -89.71 341.69 -2.84 -92.55 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -0.51 Total: 24.46 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 4.44 Total: -35.81 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -3.78 Total: -81.61 kcal Atomic # 8 Polarization: -74.20 SS G_CDS: -4.68 Total: -78.88 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 37.25 SS G_CDS: -0.34 Total: 36.90 kcal Total: -89.71 -2.84 -92.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001476611053.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.562 kcal (2) G-P(sol) polarization free energy of solvation -89.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds